OCA at 07:38, 11 January 2023

OCA — Wed, 11 Jan 2023 07:38:26 GMT

←Older revision		Revision as of 07:38, 11 January 2023
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-	'''Unreleased structure'''

-	~~The entry~~ 8adg is ~~ON HOLD until Paper~~ Publication	+	==Cryo-EM structure of Darobactin 22 bound BAM complex==
		+	<StructureSection load='8adg' size='340' side='right'caption='[[8adg]], [[Resolution\|resolution]] 3.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8adg]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli], [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8ADG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8ADG FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UX8:(2~{S},3~{R})-2-azanyl-3-(1~{H}-indol-3-yl)-3-oxidanyl-propanoic+acid'>UX8</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8adg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8adg OCA], [https://pdbe.org/8adg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8adg RCSB], [https://www.ebi.ac.uk/pdbsum/8adg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8adg ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/BAMA_ECOLI BAMA_ECOLI] Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamD, the core component of the assembly machinery.<ref>PMID:15951436</ref> <ref>PMID:16102012</ref> <ref>PMID:16824102</ref> <ref>PMID:20378773</ref> <ref>PMID:21823654</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Over recent decades, the pipeline of antibiotics acting against Gram-negative bacteria is running dry, as most discovered candidate antibiotics suffer from insufficient potency, pharmacokinetic properties, or toxicity. The darobactins, a promising new small peptide class of drug candidates, bind to novel antibiotic target BamA, an outer membrane protein. Previously, we reported that biosynthetic engineering in a heterologous host generated novel darobactins with enhanced antibacterial activity. Here we utilize an optimized purification method and present cryo-EM structures of the Bam complex with darobactin 9 (D9), which served as a blueprint for the biotechnological generation of twenty new darobactins including halogenated analogs. The newly engineered darobactin 22 binds more tightly to BamA and outperforms the favorable activity profile of D9 against clinically relevant pathogens such as carbapenem-resistant Acinetobacter baumannii up to 32-fold, without observing toxic effects.

-	~~Authors: Yuan~~, B., Marlovits, T.C.	+	Darobactins Exhibiting Superior Antibiotic Activity by Cryo-EM Structure Guided Biosynthetic Engineering.,Seyfert CE, Porten C, Yuan B, Deckarm S, Panter F, Bader CD, Coetzee J, Deschner F, Tehrani KHME, Higgins PG, Seifert H, Marlovits TC, Herrmann J, Muller R Angew Chem Int Ed Engl. 2023 Jan 9;62(2):e202214094. doi: 10.1002/anie.202214094. , Epub 2022 Dec 7. PMID:36308277<ref>PMID:36308277</ref>

-	~~Description~~: ~~Cryo~~-~~EM structure of Darobactin 22 bound BAM complex~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Yuan, B~~]]	+	<div class="pdbe-citations 8adg" style="background-color:#fffaf0;"></div>
-	[[Category: Marlovits~~, T.C~~]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Escherichia coli]]
		+	[[Category: Escherichia coli K-12]]
		+	[[Category: Large Structures]]
		+	[[Category: Synthetic construct]]
		+	[[Category: Marlovits TC]]
		+	[[Category: Yuan B]]

OCA at 05:04, 3 November 2022

OCA — Thu, 03 Nov 2022 05:04:33 GMT

←Older revision		Revision as of 05:04, 3 November 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8adg is ON HOLD	+	The entry 8adg is ON HOLD until Paper Publication

	Authors: Yuan, B., Marlovits, T.C.		Authors: Yuan, B., Marlovits, T.C.

OCA: Protected "8adg" [edit=sysop:move=sysop]

OCA — Wed, 20 Jul 2022 04:14:35 GMT

Protected "8adg" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:14, 20 July 2022

OCA: New page: '''Unreleased structure''' The entry 8adg is ON HOLD Authors: Yuan, B., Marlovits, T.C. Description: Cryo-EM structure of Darobactin 22 bound BAM complex [[Category: Unreleased Structu...

OCA — Wed, 20 Jul 2022 04:14:34 GMT

New page: '''Unreleased structure''' The entry 8adg is ON HOLD Authors: Yuan, B., Marlovits, T.C. Description: Cryo-EM structure of Darobactin 22 bound BAM complex [[Category: Unreleased Structu...

New page

'''Unreleased structure'''

The entry 8adg is ON HOLD

Authors: Yuan, B., Marlovits, T.C.

Description: Cryo-EM structure of Darobactin 22 bound BAM complex
[[Category: Unreleased Structures]]
[[Category: Yuan, B]]
[[Category: Marlovits, T.C]]

8adg - Revision history

OCA at 07:38, 11 January 2023

OCA at 05:04, 3 November 2022

OCA: Protected "8adg" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8adg is ON HOLD Authors: Yuan, B., Marlovits, T.C. Description: Cryo-EM structure of Darobactin 22 bound BAM complex [[Category: Unreleased Structu...