8b2r - Revision history

OCA at 11:10, 2 August 2023

OCA — Wed, 02 Aug 2023 11:10:33 GMT

←Older revision		Revision as of 11:10, 2 August 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[8b2r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa] and [https://en.wikipedia.org/wiki/Pyricularia_oryzae Pyricularia oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8B2R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8B2R FirstGlance]. <br>		<table><tr><td colspan='2'>[[8b2r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa] and [https://en.wikipedia.org/wiki/Pyricularia_oryzae Pyricularia oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8B2R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8B2R FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.22Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8b2r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8b2r OCA], [https://pdbe.org/8b2r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8b2r RCSB], [https://www.ebi.ac.uk/pdbsum/8b2r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8b2r ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8b2r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8b2r OCA], [https://pdbe.org/8b2r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8b2r RCSB], [https://www.ebi.ac.uk/pdbsum/8b2r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8b2r ProSAT]</span></td></tr>
	</table>		</table>

OCA at 19:26, 19 October 2022

OCA — Wed, 19 Oct 2022 19:26:42 GMT

←Older revision		Revision as of 19:26, 19 October 2022
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 8b2r is ~~ON HOLD~~	+	==Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikF with a rice (Oryza sativa) RGA5 HMA domain mutant.==
-		+	<StructureSection load='8b2r' size='340' side='right'caption='[[8b2r]], [[Resolution\|resolution]] 1.22Å' scene=''>
-	~~Authors~~: ~~Bentham~~, A.R., ~~Banfield~~, M.J.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[8b2r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa] and [https://en.wikipedia.org/wiki/Pyricularia_oryzae Pyricularia oryzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8B2R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8B2R FirstGlance]. <br>
-	~~Description~~: ~~Complex of rice blast~~ (~~Magnaporthe oryzae~~) ~~effector~~ protein AVR-~~PikF~~ with a ~~rice~~ (~~Oryza sativa~~) RGA5 ~~HMA domain mutant~~.	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8b2r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8b2r OCA], [https://pdbe.org/8b2r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8b2r RCSB], [https://www.ebi.ac.uk/pdbsum/8b2r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8b2r ProSAT]</span></td></tr>
-	[[Category: Banfield~~, M.J~~]]	+	</table>
-	[[Category: Bentham~~, A.R~~]]	+	== Function ==
		+	[https://www.uniprot.org/uniprot/RGA5R_ORYSJ RGA5R_ORYSJ] Disease resistance (R) protein that recognizes the AVR-Pia and AVR1-CO39 effector avirulence proteins from M.oryzae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Contribution of RGA4 is required to recognize the effector avirulence proteins AVR-Pia and AVR1-CO39 from M.oryzae (PubMed:21251109, PubMed:23548743). Acts as a repressor of the RGA4-mediated cell death activation. Upon infection, recognition and binding of the AVR effectors relieve the RGA5-mediated repression and triggers the hypersensitive response (PubMed:25024433). Immune response triggered by the RGA4-RGA5 -mediated recognition of AVR1-CO39 confers resistance to X.oryzae pathovars (PubMed:27289079).<ref>PMID:21251109</ref> <ref>PMID:23548743</ref> <ref>PMID:25024433</ref> <ref>PMID:27289079</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Oryza sativa]]
		+	[[Category: Pyricularia oryzae]]
		+	[[Category: Banfield MJ]]
		+	[[Category: Bentham AR]]

OCA: Protected "8b2r" [edit=sysop:move=sysop]

OCA — Wed, 21 Sep 2022 06:32:04 GMT

Protected "8b2r" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:32, 21 September 2022

OCA: New page: '''Unreleased structure''' The entry 8b2r is ON HOLD Authors: Bentham, A.R., Banfield, M.J. Description: Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikF with a ric...

OCA — Wed, 21 Sep 2022 06:32:03 GMT

New page: '''Unreleased structure''' The entry 8b2r is ON HOLD Authors: Bentham, A.R., Banfield, M.J. Description: Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikF with a ric...

New page

'''Unreleased structure'''

The entry 8b2r is ON HOLD

Authors: Bentham, A.R., Banfield, M.J.

Description: Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikF with a rice (Oryza sativa) RGA5 HMA domain mutant.
[[Category: Unreleased Structures]]
[[Category: Banfield, M.J]]
[[Category: Bentham, A.R]]