OCA at 10:14, 24 November 2022

OCA — Thu, 24 Nov 2022 10:14:16 GMT

←Older revision		Revision as of 10:14, 24 November 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 8b3j is ~~ON HOLD until 2024~~-09-16	+	==Chaetoceros socialis forma radians RNA virus 1 empty capsid atomic model==
		+	<StructureSection load='8b3j' size='340' side='right'caption='[[8b3j]], [[Resolution\|resolution]] 3.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8b3j]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Chaetoceros_socialis_forma_radians_RNA_virus_1 Chaetoceros socialis forma radians RNA virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8B3J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8B3J FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8b3j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8b3j OCA], [https://pdbe.org/8b3j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8b3j RCSB], [https://www.ebi.ac.uk/pdbsum/8b3j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8b3j ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/B9A8E1_9VIRU B9A8E1_9VIRU]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Marnaviridae viruses are abundant algal viruses that regulate the dynamics of algal blooms in aquatic environments. They employ a narrow host range because they merely lyse their algal host species. This host-specific lysis is thought to correspond to the unique receptor-binding mechanism of the Marnaviridae viruses. Here, we present the atomic structures of the full and empty capsids of Chaetoceros socialis forma radians RNA virus 1 built-in 3.0 A and 3.1 A cryo-electron microscopy maps. The empty capsid structure and the structural variability provide insights into its assembly and uncoating intermediates. In conjunction with the previously reported atomic model of the Chaetoceros tenuissimus RNA virus type II capsid, we have identified the common and diverse structural features of the VP1 surface between the Marnaviridae viruses. We have also tested the potential usage of AlphaFold2 for structural prediction of the VP1s and a subsequent structural phylogeny for classifying Marnaviridae viruses by their hosts. These findings will be crucial for inferring the host-specific receptor-binding mechanism in Marnaviridae viruses.

-	~~Authors: Wang~~, H., ~~Okamoto~~, K., ~~Munke~~, A.	+	Structural Insights into Common and Host-Specific Receptor-Binding Mechanisms in Algal Picorna-like Viruses.,Wang H, Munke A, Li S, Tomaru Y, Okamoto K Viruses. 2022 Oct 27;14(11):2369. doi: 10.3390/v14112369. PMID:36366467<ref>PMID:36366467</ref>

-	~~Description~~: Chaetoceros socialis forma radians RNA virus 1 ~~empty capsid atomic model~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Okamoto, K~~]]	+	<div class="pdbe-citations 8b3j" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Wang, H~~]]	+	== References ==
-	[[Category: ~~Munke, A~~]]	+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Chaetoceros socialis forma radians RNA virus 1]]
		+	[[Category: Large Structures]]
		+	[[Category: Munke A]]
		+	[[Category: Okamoto K]]
		+	[[Category: Wang H]]

OCA at 05:06, 3 November 2022

OCA — Thu, 03 Nov 2022 05:06:23 GMT

←Older revision		Revision as of 05:06, 3 November 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8b3j is ON HOLD	+	The entry 8b3j is ON HOLD until 2024-09-16

	Authors: Wang, H., Okamoto, K., Munke, A.		Authors: Wang, H., Okamoto, K., Munke, A.

OCA: Protected "8b3j" [edit=sysop:move=sysop]

OCA — Wed, 28 Sep 2022 04:35:29 GMT

Protected "8b3j" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:35, 28 September 2022

OCA: New page: '''Unreleased structure''' The entry 8b3j is ON HOLD Authors: Wang, H., Okamoto, K., Munke, A. Description: Chaetoceros socialis forma radians RNA virus 1 empty capsid atomic model [[C...

OCA — Wed, 28 Sep 2022 04:35:28 GMT

New page: '''Unreleased structure''' The entry 8b3j is ON HOLD Authors: Wang, H., Okamoto, K., Munke, A. Description: Chaetoceros socialis forma radians RNA virus 1 empty capsid atomic model [[C...

New page

'''Unreleased structure'''

The entry 8b3j is ON HOLD

Authors: Wang, H., Okamoto, K., Munke, A.

Description: Chaetoceros socialis forma radians RNA virus 1 empty capsid atomic model
[[Category: Unreleased Structures]]
[[Category: Okamoto, K]]
[[Category: Wang, H]]
[[Category: Munke, A]]

8b3j - Revision history

OCA at 10:14, 24 November 2022

OCA at 05:06, 3 November 2022

OCA: Protected "8b3j" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8b3j is ON HOLD Authors: Wang, H., Okamoto, K., Munke, A. Description: Chaetoceros socialis forma radians RNA virus 1 empty capsid atomic model [[C...