8b4n - Revision history

OCA at 08:16, 7 February 2024

OCA — Wed, 07 Feb 2024 08:16:14 GMT

←Older revision		Revision as of 08:16, 7 February 2024
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[8b4n]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyridium_purpureum Porphyridium purpureum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8B4N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8B4N FirstGlance]. <br>		<table><tr><td colspan='2'>[[8b4n]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyridium_purpureum Porphyridium purpureum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8B4N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8B4N FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8b4n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8b4n OCA], [https://pdbe.org/8b4n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8b4n RCSB], [https://www.ebi.ac.uk/pdbsum/8b4n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8b4n ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8b4n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8b4n OCA], [https://pdbe.org/8b4n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8b4n RCSB], [https://www.ebi.ac.uk/pdbsum/8b4n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8b4n ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/PHEA_PORPP PHEA_PORPP] Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.		[https://www.uniprot.org/uniprot/PHEA_PORPP PHEA_PORPP] Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Here, an unprecedented biorefinery approach has been designed to recover high-added value bioproducts starting from the culture ofPorphyridium cruentum. This unicellular marine red alga can secrete and accumulate high-value compounds that can find applications in a wide variety of industrial fields. 300 +/- 67 mg/L of exopolysaccharides were obtained from cell culture medium; phycoerythrin was efficiently extracted (40% of total extract) and isolated by single chromatography, with a purity grade that allowed the crystal structure determination at 1.60 A; a twofold increase in beta-carotene yield was obtained from the residual biomass; the final residual biomass was found to be enriched in saturated fatty acids. Thus, for the first time, a complete exploitation ofP. cruentumculture was set up.
-
-	Inside out Porphyridium cruentum: Beyond the Conventional Biorefinery Concept.,Liberti D, Imbimbo P, Giustino E, D'Elia L, Ferraro G, Casillo A, Illiano A, Pinto G, Di Meo MC, Alvarez-Rivera G, Corsaro MM, Amoresano A, Zarrelli A, Ibanez E, Merlino A, Monti DM ACS Sustain Chem Eng. 2023 Jan 9;11(1):381-389. doi: , 10.1021/acssuschemeng.2c05869. Epub 2022 Nov 29. PMID:36643001<ref>PMID:36643001</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 8b4n" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 06:45, 8 February 2023

OCA — Wed, 08 Feb 2023 06:45:47 GMT

←Older revision		Revision as of 06:45, 8 February 2023
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-	'''Unreleased structure'''

-	~~The entry~~ 8b4n is ~~ON HOLD until Paper~~ Publication	+	==X-ray structure of phycoerythrin from Porphyridium cruentum==
		+	<StructureSection load='8b4n' size='340' side='right'caption='[[8b4n]], [[Resolution\|resolution]] 1.60Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8b4n]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyridium_purpureum Porphyridium purpureum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8B4N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8B4N FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene>, <scene name='pdbligand=PEB:PHYCOERYTHROBILIN'>PEB</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8b4n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8b4n OCA], [https://pdbe.org/8b4n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8b4n RCSB], [https://www.ebi.ac.uk/pdbsum/8b4n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8b4n ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/PHEA_PORPP PHEA_PORPP] Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Here, an unprecedented biorefinery approach has been designed to recover high-added value bioproducts starting from the culture ofPorphyridium cruentum. This unicellular marine red alga can secrete and accumulate high-value compounds that can find applications in a wide variety of industrial fields. 300 +/- 67 mg/L of exopolysaccharides were obtained from cell culture medium; phycoerythrin was efficiently extracted (40% of total extract) and isolated by single chromatography, with a purity grade that allowed the crystal structure determination at 1.60 A; a twofold increase in beta-carotene yield was obtained from the residual biomass; the final residual biomass was found to be enriched in saturated fatty acids. Thus, for the first time, a complete exploitation ofP. cruentumculture was set up.

-	~~Authors~~: ~~Merlino, A~~., Ferraro, G.	+	Inside out Porphyridium cruentum: Beyond the Conventional Biorefinery Concept.,Liberti D, Imbimbo P, Giustino E, D'Elia L, Ferraro G, Casillo A, Illiano A, Pinto G, Di Meo MC, Alvarez-Rivera G, Corsaro MM, Amoresano A, Zarrelli A, Ibanez E, Merlino A, Monti DM ACS Sustain Chem Eng. 2023 Jan 9;11(1):381-389. doi: , 10.1021/acssuschemeng.2c05869. Epub 2022 Nov 29. PMID:36643001<ref>PMID:36643001</ref>

-	~~Description: X-ray structure~~ of ~~phycoerythrin from Porphyridium cruentum~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: Ferraro, G]]	+	<div class="pdbe-citations 8b4n" style="background-color:#fffaf0;"></div>
-	[[Category: Merlino, A]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Porphyridium purpureum]]
		+	[[Category: Ferraro G]]
		+	[[Category: Merlino A]]

OCA at 04:43, 9 November 2022

OCA — Wed, 09 Nov 2022 04:43:28 GMT

←Older revision		Revision as of 04:43, 9 November 2022
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8b4n is ON HOLD	+	The entry 8b4n is ON HOLD until Paper Publication

	Authors: Merlino, A., Ferraro, G.		Authors: Merlino, A., Ferraro, G.

OCA: Protected "8b4n" [edit=sysop:move=sysop]

OCA — Wed, 28 Sep 2022 04:37:04 GMT

Protected "8b4n" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:37, 28 September 2022

OCA: New page: '''Unreleased structure''' The entry 8b4n is ON HOLD Authors: Merlino, A., Ferraro, G. Description: X-ray structure of phycoerythrin from Porphyridium cruentum [[Category: Unreleased S...

OCA — Wed, 28 Sep 2022 04:37:03 GMT

New page: '''Unreleased structure''' The entry 8b4n is ON HOLD Authors: Merlino, A., Ferraro, G. Description: X-ray structure of phycoerythrin from Porphyridium cruentum [[Category: Unreleased S...

New page

'''Unreleased structure'''

The entry 8b4n is ON HOLD

Authors: Merlino, A., Ferraro, G.

Description: X-ray structure of phycoerythrin from Porphyridium cruentum
[[Category: Unreleased Structures]]
[[Category: Ferraro, G]]
[[Category: Merlino, A]]