OCA at 07:15, 12 July 2023

OCA — Wed, 12 Jul 2023 07:15:50 GMT

←Older revision		Revision as of 07:15, 12 July 2023
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 8bau is ~~ON HOLD until Paper~~ Publication	+	==Phytophthora nicotianae var. parasitica NADAR in complex with ADP-ribose==
		+	<StructureSection load='8bau' size='340' side='right'caption='[[8bau]], [[Resolution\|resolution]] 1.60Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8bau]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Phytophthora_nicotianae_var._parasitica Phytophthora nicotianae var. parasitica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8BAU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8BAU FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL+[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL]+HYDROGEN+PHOSPHATE'>AR6</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8bau FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8bau OCA], [https://pdbe.org/8bau PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8bau RCSB], [https://www.ebi.ac.uk/pdbsum/8bau PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8bau ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/W2PSB7_PHYPN W2PSB7_PHYPN]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Modification of nucleic acids by ADP-ribosylation is catalyzed by various ADP-ribosyltransferases, including the DarT enzyme. The latter is part of the bacterial toxin-antitoxin (TA) system DarTG, which was shown to provide control of DNA replication and bacterial growth as well as protection against bacteriophages. Two subfamilies have been identified, DarTG1 and DarTG2, which are distinguished by their associated antitoxins. While DarTG2 catalyzes reversible ADP-ribosylation of thymidine bases employing a macrodomain as antitoxin, the DNA ADP-ribosylation activity of DarTG1 and the biochemical function of its antitoxin, a NADAR domain, are as yet unknown. Using structural and biochemical approaches, we show that DarT1-NADAR is a TA system for reversible ADP-ribosylation of guanosine bases. DarT1 evolved the ability to link ADP-ribose to the guanine amino group, which is specifically hydrolyzed by NADAR. We show that guanine de-ADP-ribosylation is also conserved among eukaryotic and non-DarT-associated NADAR members, indicating a wide distribution of reversible guanine modifications beyond DarTG systems.

-	~~Authors~~:	+	Molecular basis for the reversible ADP-ribosylation of guanosine bases.,Schuller M, Raggiaschi R, Mikolcevic P, Rack JGM, Ariza A, Zhang Y, Ledermann R, Tang C, Mikoc A, Ahel I Mol Cell. 2023 Jul 6;83(13):2303-2315.e6. doi: 10.1016/j.molcel.2023.06.013. Epub , 2023 Jun 29. PMID:37390817<ref>PMID:37390817</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 8bau" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Phytophthora nicotianae var. parasitica]]
		+	[[Category: Ariza A]]
		+	[[Category: Schuller M]]

OCA at 04:53, 8 February 2023

OCA — Wed, 08 Feb 2023 04:53:41 GMT

←Older revision		Revision as of 04:53, 8 February 2023
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8bau is ON HOLD	+	The entry 8bau is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "8bau" [edit=sysop:move=sysop]

OCA — Wed, 19 Oct 2022 17:02:26 GMT

Protected "8bau" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:02, 19 October 2022

OCA: New page: '''Unreleased structure''' The entry 8bau is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 19 Oct 2022 17:02:23 GMT

New page: '''Unreleased structure''' The entry 8bau is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 8bau is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

8bau - Revision history

OCA at 07:15, 12 July 2023

OCA at 04:53, 8 February 2023

OCA: Protected "8bau" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8bau is ON HOLD Authors: Description: Category: Unreleased Structures