OCA at 05:40, 5 July 2023

OCA — Wed, 05 Jul 2023 05:40:05 GMT

←Older revision		Revision as of 05:40, 5 July 2023
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 8btv is ~~ON HOLD until Paper~~ Publication	+	==Structure of D179N BlaC from Mycobacterium tuberculosis bound to the trans-enamine adduct of sulbactam==
		+	<StructureSection load='8btv' size='340' side='right'caption='[[8btv]], [[Resolution\|resolution]] 1.95Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8btv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8BTV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8BTV FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.95Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=TSL:TRANS-ENAMINE+INTERMEDIATE+OF+SULBACTAM'>TSL</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8btv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8btv OCA], [https://pdbe.org/8btv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8btv RCSB], [https://www.ebi.ac.uk/pdbsum/8btv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8btv ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/BLAC_MYCTO BLAC_MYCTO] Extended spectrum beta-lactamase (ESBL) that inactivates beta-lactam antibiotics by hydrolyzing the amide group of the beta-lactam ring. Displays high levels of penicillinase and cephalosporinase activity as well as measurable activity with carbapenems, including imipenem and meropenem. Plays a primary role in the intrinsic resistance of M.tuberculosis to beta-lactam antibiotics.[UniProtKB:P9WKD3]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Conserved residues are often considered essential for function, and substitutions in such residues are expected to have a negative influence on the properties of a protein. However, mutations in a few highly conserved residues of the beta-lactamase from Mycobacterium tuberculosis, BlaC, were shown to have no or only limited negative effect on the enzyme. One such mutant, D179N, even conveyed increased ceftazidime resistance upon bacterial cells, while displaying good activity against penicillins. The crystal structures of BlaC D179N in resting state and in complex with sulbactam reveal subtle structural changes in the Omega-loop as compared to the structure of wild-type BlaC. Introducing this mutation in four other beta-lactamases, CTX-M-14, KPC-2, NMC-A and TEM-1, resulted in decreased antibiotic resistance for penicillins and meropenem. The results demonstrate that the Asp in position 179 is generally essential for class A beta-lactamases but not for BlaC, which can be explained by the importance of the interaction with the side chain of Arg164 that is absent in BlaC. It is concluded that Asp179 though conserved is not essential in BlaC, as a consequence of epistasis.

-	~~Authors: Chikunova,~~ A., ~~Bruenle~~, S., Ubbink, M.	+	Asp179 in the class A beta-lactamase from Mycobacterium tuberculosis is a conserved yet not essential residue due to epistasis.,van Alen I, Chikunova A, van Zanten DB, de Block AA, Timmer M, Brunle S, Ubbink M FEBS J. 2023 Jun 19. doi: 10.1111/febs.16892. PMID:37335937<ref>PMID:37335937</ref>

-	~~Description: Structure~~ of ~~D179N BlaC from Mycobacterium tuberculosis bound to~~ the ~~trans-enamine adduct~~ of ~~sulbactam~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Chikunova, A~~]]	+	<div class="pdbe-citations 8btv" style="background-color:#fffaf0;"></div>
-	[[Category: Bruenle, S]]	+	== References ==
-	[[Category: Ubbink, M]]	+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Mycobacterium tuberculosis]]
		+	[[Category: Bruenle S]]
		+	[[Category: Chikunova A]]
		+	[[Category: Ubbink M]]

OCA at 04:48, 25 January 2023

OCA — Wed, 25 Jan 2023 04:48:44 GMT

←Older revision		Revision as of 04:48, 25 January 2023
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8btv is ON HOLD	+	The entry 8btv is ON HOLD until Paper Publication

	Authors: Chikunova, A., Bruenle, S., Ubbink, M.		Authors: Chikunova, A., Bruenle, S., Ubbink, M.
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	Description: Structure of D179N BlaC from Mycobacterium tuberculosis bound to the trans-enamine adduct of sulbactam		Description: Structure of D179N BlaC from Mycobacterium tuberculosis bound to the trans-enamine adduct of sulbactam
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Ubbink, M]]
	[[Category: Chikunova, A]]		[[Category: Chikunova, A]]
	[[Category: Bruenle, S]]		[[Category: Bruenle, S]]
		+	[[Category: Ubbink, M]]

OCA: Protected "8btv" [edit=sysop:move=sysop]

OCA — Wed, 14 Dec 2022 07:21:40 GMT

Protected "8btv" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:21, 14 December 2022

OCA: New page: '''Unreleased structure''' The entry 8btv is ON HOLD Authors: Chikunova, A., Bruenle, S., Ubbink, M. Description: Structure of D179N BlaC from Mycobacterium tuberculosis bound to the t...

OCA — Wed, 14 Dec 2022 07:21:39 GMT

New page: '''Unreleased structure''' The entry 8btv is ON HOLD Authors: Chikunova, A., Bruenle, S., Ubbink, M. Description: Structure of D179N BlaC from Mycobacterium tuberculosis bound to the t...

New page

'''Unreleased structure'''

The entry 8btv is ON HOLD

Authors: Chikunova, A., Bruenle, S., Ubbink, M.

Description: Structure of D179N BlaC from Mycobacterium tuberculosis bound to the trans-enamine adduct of sulbactam
[[Category: Unreleased Structures]]
[[Category: Ubbink, M]]
[[Category: Chikunova, A]]
[[Category: Bruenle, S]]

8btv - Revision history

OCA at 05:40, 5 July 2023

OCA at 04:48, 25 January 2023

OCA: Protected "8btv" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8btv is ON HOLD Authors: Chikunova, A., Bruenle, S., Ubbink, M. Description: Structure of D179N BlaC from Mycobacterium tuberculosis bound to the t...