OCA at 23:10, 27 December 2023

OCA — Wed, 27 Dec 2023 23:10:34 GMT

←Older revision		Revision as of 23:10, 27 December 2023
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-	'''Unreleased structure'''

-	~~The entry~~ 8ck7 is ~~ON HOLD until Paper~~ Publication	+	==Avidin complexed to theophylline==
		+	<StructureSection load='8ck7' size='340' side='right'caption='[[8ck7]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8ck7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8CK7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8CK7 FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TEP:THEOPHYLLINE'>TEP</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8ck7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8ck7 OCA], [https://pdbe.org/8ck7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8ck7 RCSB], [https://www.ebi.ac.uk/pdbsum/8ck7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8ck7 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/AVID_CHICK AVID_CHICK] The biological function of avidin is not known. Forms a strong non-covalent specific complex with biotin (one molecule of biotin per subunit of avidin).
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The interaction between avidin and its counterpart biotin is one of central importance in biology and has been reproposed and studied at length. However, the binding pocket of avidin is prone to promiscuous binding, able to accommodate even non-biotinylated ligands. Comprehending the factors that distinguish the extremely strong interaction with biotin to other ligands is an important step to fully picture the thermodynamics of these low-affinity complexes. Here, we present the complex between chicken white egg avidin and theophylline (TEP), the xanthine derivative used in the therapy of asthma. In the crystal structure, TEP lies in the biotin-binding pocket with the same orientation and planarity of the aromatic ring of 8-oxodeoxyguanosine. Indeed, its affinity for avidin measured by isothermal titration calorimetry is in the same muM range as those obtained for the previously characterized nucleoside derivatives. By the use of molecular dynamic simulations, we have investigated the most important intermolecular interactions occurring in the avidin-TEP binding pocket and compared them with those obtained for the avidin 8-oxodeoxyguanosine and avidin-biotin complexes. These results testify the capability of avidin to complex purely aromatic molecules.

-	~~Authors~~: De March, M.	+	The avidin-theophylline complex: A structural and computational study.,Spinello A, Lapenta F, De March M Proteins. 2023 Oct;91(10):1437-1443. doi: 10.1002/prot.26538. Epub 2023 Jun 15. PMID:37318226<ref>PMID:37318226</ref>

-	~~Description~~: ~~Avidin complexed to theophylline~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: De March, M]]	+	<div class="pdbe-citations 8ck7" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
		+	[[Category: De March M]]

OCA at 05:32, 8 March 2023

OCA — Wed, 08 Mar 2023 05:32:48 GMT

←Older revision		Revision as of 05:32, 8 March 2023
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8ck7 is ON HOLD	+	The entry 8ck7 is ON HOLD until Paper Publication

	Authors: De March, M.		Authors: De March, M.

OCA at 04:19, 2 March 2023

OCA — Thu, 02 Mar 2023 04:19:40 GMT

←Older revision		Revision as of 04:19, 2 March 2023
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8ck7 is ON HOLD ~~until sometime in the future~~	+	The entry 8ck7 is ON HOLD

	Authors: De March, M.		Authors: De March, M.

OCA: Protected "8ck7" [edit=sysop:move=sysop]

OCA — Wed, 22 Feb 2023 09:42:30 GMT

Protected "8ck7" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:42, 22 February 2023

OCA: New page: '''Unreleased structure''' The entry 8ck7 is ON HOLD until sometime in the future Authors: De March, M. Description: Avidin complexed to theophylline [[Category: Unreleased Structures]...

OCA — Wed, 22 Feb 2023 09:42:18 GMT

New page: '''Unreleased structure''' The entry 8ck7 is ON HOLD until sometime in the future Authors: De March, M. Description: Avidin complexed to theophylline [[Category: Unreleased Structures]...

New page

'''Unreleased structure'''

The entry 8ck7 is ON HOLD until sometime in the future

Authors: De March, M.

Description: Avidin complexed to theophylline
[[Category: Unreleased Structures]]
[[Category: De March, M]]

8ck7 - Revision history

OCA at 23:10, 27 December 2023

OCA at 05:32, 8 March 2023

OCA at 04:19, 2 March 2023

OCA: Protected "8ck7" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8ck7 is ON HOLD until sometime in the future Authors: De March, M. Description: Avidin complexed to theophylline [[Category: Unreleased Structures]...