8dax - Revision history

OCA at 17:26, 18 October 2023

OCA — Wed, 18 Oct 2023 17:26:25 GMT

←Older revision		Revision as of 17:26, 18 October 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[8dax]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8DAX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8DAX FirstGlance]. <br>		<table><tr><td colspan='2'>[[8dax]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8DAX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8DAX FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8dax FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8dax OCA], [https://pdbe.org/8dax PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8dax RCSB], [https://www.ebi.ac.uk/pdbsum/8dax PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8dax ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.61Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8dax FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8dax OCA], [https://pdbe.org/8dax PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8dax RCSB], [https://www.ebi.ac.uk/pdbsum/8dax PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8dax ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 07:25, 3 November 2022

OCA — Thu, 03 Nov 2022 07:25:03 GMT

←Older revision		Revision as of 07:25, 3 November 2022
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-	'''Unreleased structure'''

-	~~The entry~~ 8dax is ~~ON HOLD until Paper~~ Publication	+	==New insights into the P186 flip and oligomeric state of Staphylococcus aureus exfoliative toxin E: implications for the exfoliative mechanism==
		+	<StructureSection load='8dax' size='340' side='right'caption='[[8dax]], [[Resolution\|resolution]] 1.61Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8dax]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8DAX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8DAX FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8dax FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8dax OCA], [https://pdbe.org/8dax PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8dax RCSB], [https://www.ebi.ac.uk/pdbsum/8dax PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8dax ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/L0RUV7_STAAU L0RUV7_STAAU]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Staphylococcal exfoliative toxins (ETs) are glutamyl endopeptidases that specifically cleave the Glu381-Gly382 bond in the ectodomains of desmoglein 1 (Dsg1) via complex action mechanisms. To date, four ETs have been identified in different Staphylococcus aureus strains and ETE is the most recently characterized. The unusual properties of ETs have been attributed to a unique structural feature, i.e., the 180 degrees flip of the carbonyl oxygen (O) of the nonconserved residue 192/186 (ETA/ETE numbering), not conducive to the oxyanion hole formation. We report the crystal structure of ETE determined at 1.61 A resolution, in which P186(O) adopts two conformations displaying a 180 degrees rotation. This finding, together with free energy calculations, supports the existence of a dynamic transition between the conformations under the tested conditions. Moreover, enzymatic assays showed no significant differences in the esterolytic efficiency of ETE and ETE/P186G, a mutant predicted to possess a functional oxyanion hole, thus downplaying the influence of the flip on the activity. Finally, we observed the formation of ETE homodimers in solution and the predicted homodimeric structure revealed the participation of a characteristic nonconserved loop in the interface and the partial occlusion of the protein active site, suggesting that monomerization is required for enzymatic activity.

-	~~Authors~~:	+	Staphylococcus aureus Exfoliative Toxin E, Oligomeric State and Flip of P186: Implications for Its Action Mechanism.,Gismene C, Hernandez Gonzalez JE, Santisteban ARN, Ziem Nascimento AF, Dos Santos Cunha L, de Moraes FR, de Oliveira CLP, Oliveira CC, Jocelan Scarin Provazzi P, Pascutti PG, Arni RK, Barros Mariutti R Int J Mol Sci. 2022 Aug 30;23(17). pii: ijms23179857. doi: 10.3390/ijms23179857. PMID:36077258<ref>PMID:36077258</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 8dax" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Staphylococcus aureus]]
		+	[[Category: Arni RK]]
		+	[[Category: Gismene C]]
		+	[[Category: Hernandez-Gonzalez JE]]
		+	[[Category: Mariutti RB]]
		+	[[Category: Nascimento AFZ]]
		+	[[Category: Santisteban ARN]]
		+	[[Category: De Moraes FR]]

OCA at 04:23, 20 July 2022

OCA — Wed, 20 Jul 2022 04:23:38 GMT

←Older revision		Revision as of 04:23, 20 July 2022
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8dax is ON HOLD	+	The entry 8dax is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "8dax" [edit=sysop:move=sysop]

OCA — Wed, 22 Jun 2022 07:28:47 GMT

Protected "8dax" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:28, 22 June 2022

OCA: New page: '''Unreleased structure''' The entry 8dax is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 22 Jun 2022 07:28:46 GMT

New page: '''Unreleased structure''' The entry 8dax is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 8dax is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]