8fc3 - Revision history

OCA at 10:32, 25 October 2023

OCA — Wed, 25 Oct 2023 10:32:13 GMT

←Older revision		Revision as of 10:32, 25 October 2023
Line 10:		Line 10:
	== Function ==		== Function ==
	[https://www.uniprot.org/uniprot/RS12_THET8 RS12_THET8] With S4 and S5 plays an important role in translational accuracy (By similarity).[HAMAP-Rule:MF_00403_B] Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.[HAMAP-Rule:MF_00403_B]		[https://www.uniprot.org/uniprot/RS12_THET8 RS12_THET8] With S4 and S5 plays an important role in translational accuracy (By similarity).[HAMAP-Rule:MF_00403_B] Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.[HAMAP-Rule:MF_00403_B]
		+
		+	==See Also==
		+	*[[Ribosomal protein THX 3D structures\|Ribosomal protein THX 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 07:20, 12 July 2023

OCA — Wed, 12 Jul 2023 07:20:31 GMT

←Older revision		Revision as of 07:20, 12 July 2023
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 8fc3 ~~is ON HOLD~~	+	==Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution==
-		+	<StructureSection load='8fc3' size='340' side='right'caption='[[8fc3]], [[Resolution\|resolution]] 2.60Å' scene=''>
-	~~Authors~~: ~~Chen, C~~.-W., ~~Syroegin, E~~.A., ~~Svetlov~~, M.S., ~~Polikanov~~, Y.S.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[8fc3]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8FC3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8FC3 FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure~~ of the ~~Thermus thermophilus 70S ribosome~~ in ~~complex~~ with ~~protein Y~~, ~~hygromycin A~~, and ~~telithromycin at 2~~.~~60A resolution~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.6Å</td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0TD:(3S)-3-(METHYLSULFANYL)-L-ASPARTIC+ACID'>0TD</scene>, <scene name='pdbligand=2MA:2-METHYLADENOSINE-5-MONOPHOSPHATE'>2MA</scene>, <scene name='pdbligand=2MG:2N-METHYLGUANOSINE-5-MONOPHOSPHATE'>2MG</scene>, <scene name='pdbligand=2MU:2,5-DIMETHYLURIDINE-5-MONOPHOSPHATE'>2MU</scene>, <scene name='pdbligand=4OC:4N,O2-METHYLCYTIDINE-5-MONOPHOSPHATE'>4OC</scene>, <scene name='pdbligand=5MC:5-METHYLCYTIDINE-5-MONOPHOSPHATE'>5MC</scene>, <scene name='pdbligand=5MU:5-METHYLURIDINE+5-MONOPHOSPHATE'>5MU</scene>, <scene name='pdbligand=ARG:ARGININE'>ARG</scene>, <scene name='pdbligand=G7M:N7-METHYL-GUANOSINE-5-MONOPHOSPHATE'>G7M</scene>, <scene name='pdbligand=HGR:HYGROMYCIN+A'>HGR</scene>, <scene name='pdbligand=M2G:N2-DIMETHYLGUANOSINE-5-MONOPHOSPHATE'>M2G</scene>, <scene name='pdbligand=MA6:6N-DIMETHYLADENOSINE-5-MONOPHOSHATE'>MA6</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=OMC:O2-METHYLYCYTIDINE-5-MONOPHOSPHATE'>OMC</scene>, <scene name='pdbligand=OMG:O2-METHYLGUANOSINE-5-MONOPHOSPHATE'>OMG</scene>, <scene name='pdbligand=PSU:PSEUDOURIDINE-5-MONOPHOSPHATE'>PSU</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=TEL:TELITHROMYCIN'>TEL</scene>, <scene name='pdbligand=UR3:3-METHYLURIDINE-5-MONOPHOSHATE'>UR3</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	[[Category: ~~Polikanov, Y.S~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8fc3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8fc3 OCA], [https://pdbe.org/8fc3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8fc3 RCSB], [https://www.ebi.ac.uk/pdbsum/8fc3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8fc3 ProSAT]</span></td></tr>
-	[[Category: ~~Syroegin, E.A~~]]	+	</table>
-	[[Category: ~~Chen, C.-W~~]]	+	== Function ==
-	[[Category: Svetlov~~, M.S~~]]	+	[https://www.uniprot.org/uniprot/RS12_THET8 RS12_THET8] With S4 and S5 plays an important role in translational accuracy (By similarity).[HAMAP-Rule:MF_00403_B] Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.[HAMAP-Rule:MF_00403_B]
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Thermus thermophilus HB8]]
		+	[[Category: Chen C-W]]
		+	[[Category: Polikanov YS]]
		+	[[Category: Svetlov MS]]
		+	[[Category: Syroegin EA]]

OCA: Protected "8fc3" [edit=sysop:move=sysop]

OCA — Wed, 07 Dec 2022 05:42:23 GMT

Protected "8fc3" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:42, 7 December 2022

OCA: New page: '''Unreleased structure''' The entry 8fc3 is ON HOLD Authors: Chen, C.-W., Syroegin, E.A., Svetlov, M.S., Polikanov, Y.S. Description: Crystal structure of the Thermus thermophilus 70S...

OCA — Wed, 07 Dec 2022 05:42:20 GMT

New page: '''Unreleased structure''' The entry 8fc3 is ON HOLD Authors: Chen, C.-W., Syroegin, E.A., Svetlov, M.S., Polikanov, Y.S. Description: Crystal structure of the Thermus thermophilus 70S...

New page

'''Unreleased structure'''

The entry 8fc3 is ON HOLD

Authors: Chen, C.-W., Syroegin, E.A., Svetlov, M.S., Polikanov, Y.S.

Description: Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution
[[Category: Unreleased Structures]]
[[Category: Polikanov, Y.S]]
[[Category: Syroegin, E.A]]
[[Category: Chen, C.-W]]
[[Category: Svetlov, M.S]]