OCA at 05:53, 23 August 2023

OCA — Wed, 23 Aug 2023 05:53:55 GMT

←Older revision		Revision as of 05:53, 23 August 2023
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-	'''Unreleased structure'''

-	~~The entry~~ 8g1u is ~~ON HOLD until Paper~~ Publication	+	==Structure of the methylosome-Lsm10/11 complex==
		+	<StructureSection load='8g1u' size='340' side='right'caption='[[8g1u]], [[Resolution\|resolution]] 2.83Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8g1u]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8G1U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8G1U FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 2.83Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADN:ADENOSINE'>ADN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8g1u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8g1u OCA], [https://pdbe.org/8g1u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8g1u RCSB], [https://www.ebi.ac.uk/pdbsum/8g1u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8g1u ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/ANM5_HUMAN ANM5_HUMAN] Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Methylates SUPT5H. Mono- and dimethylates arginine residues of myelin basic protein (MBP) in vitro. Plays a role in the assembly of snRNP core particles. May play a role in cytokine-activated transduction pathways. Negatively regulates cyclin E1 promoter activity and cellular proliferation. May regulate the SUPT5H transcriptional elongation properties. May be part of a pathway that is connected to a chloride current, possibly through cytoskeletal rearrangement. Methylates histone H2A and H4 'Arg-3' during germ cell development. Methylates histone H3 'Arg-8', which may repress transcription. Methylates the Piwi proteins (PIWIL1, PIWIL2 and PIWIL4), methylation of Piwi proteins being required for the interaction with Tudor domain-containing proteins and subsequent localization to the meiotic nuage. Methylates RPS10. Attenuates EGF signaling through the MAPK1/MAPK3 pathway acting at 2 levels. First, monomethylates EGFR; this enhances EGFR 'Tyr-1197' phosphorylation and PTPN6 recruitment, eventually leading to reduced SOS1 phosphorylation. Second, methylates RAF1 and probably BRAF, hence destabilizing these 2 signaling proteins and reducing their catalytic activity. Required for induction of E-selectin and VCAM-1, on the endothelial cells surface at sites of inflammation. Methylates HOXA9. Methylates and regulates SRGAP2 which is involved in cell migration and differentiation. Acts as a transcriptional corepressor in CRY1-mediated repression of the core circadian component PER1 by regulating the H4R3 dimethylation at the PER1 promoter.<ref>PMID:10531356</ref> <ref>PMID:11152681</ref> <ref>PMID:11747828</ref> <ref>PMID:12411503</ref> <ref>PMID:15737618</ref> <ref>PMID:17709427</ref> <ref>PMID:20159986</ref> <ref>PMID:20810653</ref> <ref>PMID:21258366</ref> <ref>PMID:21917714</ref> <ref>PMID:22269951</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	U7 snRNP is a multi-subunit endonuclease required for 3' end processing of metazoan replication-dependent histone pre-mRNAs. In contrast to the spliceosomal snRNPs, U7 snRNP lacks the Sm subunits D1 and D2 and instead contains two related proteins, Lsm10 and Lsm11. The remaining five subunits of the U7 heptameric Sm ring, SmE, F, G, B and D3, are shared with the spliceosomal snRNPs. The pathway that assembles the unique ring of U7 snRNP is unknown. Here, we show that a heterodimer of Lsm10 and Lsm11 tightly interacts with the methylosome, a complex of the arginine methyltransferase PRMT5, MEP50 and pICln known to methylate arginines in the C-terminal regions of the Sm proteins B, D1 and D3 during the spliceosomal Sm ring assembly. Both biochemical and Cryo-EM structural studies demonstrate that the interaction is mediated by PRMT5, which binds and methylates two arginine residues in the N-terminal region of Lsm11. Surprisingly, PRMT5 also methylates an N-terminal arginine in SmE, a subunit that does not undergo this type of modification during the biogenesis of the spliceosomal snRNPs. An intriguing possibility is that the unique methylation pattern of Lsm11 and SmE plays a vital role in the assembly of the U7 snRNP.

-	~~Authors: Lin, M~~., Paige, A., ~~Tong~~, L.	+	In vitro methylation of the U7 snRNP subunits Lsm11 and SmE by the PRMT5/MEP50/pICln methylosome.,Yang XC, Desotell A, Lin MH, Paige AS, Malinowska A, Sun Y, Aik WS, Dadlez M, Tong L, Dominski Z RNA. 2023 Aug 10:rna.079709.123. doi: 10.1261/rna.079709.123. PMID:37562960<ref>PMID:37562960</ref>

-	~~Description: Structure~~ of the ~~methylosome~~-~~Lsm10~~/~~11 complex~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Tong, L~~]]	+	<div class="pdbe-citations 8g1u" style="background-color:#fffaf0;"></div>
-	[[Category: Lin, M]]	+	== References ==
-	[[Category: Paige, A]]	+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Homo sapiens]]
		+	[[Category: Large Structures]]
		+	[[Category: Mus musculus]]
		+	[[Category: Lin M]]
		+	[[Category: Paige A]]
		+	[[Category: Tong L]]

OCA at 04:35, 19 July 2023

OCA — Wed, 19 Jul 2023 04:35:21 GMT

←Older revision		Revision as of 04:35, 19 July 2023
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8g1u is ON HOLD	+	The entry 8g1u is ON HOLD until Paper Publication

	Authors: Lin, M., Paige, A., Tong, L.		Authors: Lin, M., Paige, A., Tong, L.

OCA: Protected "8g1u" [edit=sysop:move=sysop]

OCA — Wed, 15 Feb 2023 08:45:03 GMT

Protected "8g1u" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:45, 15 February 2023

OCA: New page: '''Unreleased structure''' The entry 8g1u is ON HOLD Authors: Lin, M., Paige, A., Tong, L. Description: Structure of the methylosome-Lsm10/11 complex [[Category: Unreleased Structures]...

OCA — Wed, 15 Feb 2023 08:45:00 GMT

New page: '''Unreleased structure''' The entry 8g1u is ON HOLD Authors: Lin, M., Paige, A., Tong, L. Description: Structure of the methylosome-Lsm10/11 complex [[Category: Unreleased Structures]...

New page

'''Unreleased structure'''

The entry 8g1u is ON HOLD

Authors: Lin, M., Paige, A., Tong, L.

Description: Structure of the methylosome-Lsm10/11 complex
[[Category: Unreleased Structures]]
[[Category: Tong, L]]
[[Category: Lin, M]]
[[Category: Paige, A]]

8g1u - Revision history

OCA at 05:53, 23 August 2023

OCA at 04:35, 19 July 2023

OCA: Protected "8g1u" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8g1u is ON HOLD Authors: Lin, M., Paige, A., Tong, L. Description: Structure of the methylosome-Lsm10/11 complex [[Category: Unreleased Structures]...