OCA at 17:08, 26 April 2023

OCA — Wed, 26 Apr 2023 17:08:57 GMT

←Older revision		Revision as of 17:08, 26 April 2023
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-	'''Unreleased structure'''

-	~~The entry~~ 8h1c is ~~ON HOLD~~	+	==Cryo-EM structure of Oryza sativa plastid glycyl-tRNA synthetase in complex with two tRNAs (one in tRNA binding state and the other in tRNA locked state)==
		+	<StructureSection load='8h1c' size='340' side='right'caption='[[8h1c]], [[Resolution\|resolution]] 4.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8h1c]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa] and [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8H1C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8H1C FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8h1c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8h1c OCA], [https://pdbe.org/8h1c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8h1c RCSB], [https://www.ebi.ac.uk/pdbsum/8h1c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8h1c ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q0DFB6_ORYSJ Q0DFB6_ORYSJ]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Two types of glycyl-tRNA synthetase (GlyRS) are known, the alpha2 and the alpha2beta2 GlyRSs. Both types of synthetase employ a class II catalytic domain to aminoacylate tRNAGly. In plastids and some bacteria, the alpha and beta subunits are fused and are designated as (alphabeta)2 GlyRSs. While the tRNA recognition and aminoacylation mechanisms are well understood for alpha2 GlyRSs, little is known about the mechanisms for alpha2beta2/(alphabeta)2 GlyRSs. Here we describe structures of the (alphabeta)2 GlyRS from Oryza sativa chloroplast by itself and in complex with cognate tRNAGly. The set of structures reveals that the U-shaped beta half of the synthetase selects the tRNA in a two-step manner. In the first step, the synthetase engages the elbow and the anticodon base C35 of the tRNA. In the second step, the tRNA has rotated approximately 9 degrees toward the catalytic centre. The synthetase probes the tRNA for the presence of anticodon base C36 and discriminator base C73. This intricate mechanism enables the tRNA to access the active site of the synthetase from a direction opposite to that of most other class II synthetases.

-	~~Authors~~:	+	Structural basis of a two-step tRNA recognition mechanism for plastid glycyl-tRNA synthetase.,Yu Z, Wu Z, Li Y, Hao Q, Cao X, Blaha GM, Lin J, Lu G Nucleic Acids Res. 2023 Mar 13:gkad144. doi: 10.1093/nar/gkad144. PMID:36912079<ref>PMID:36912079</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 8h1c" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Oryza sativa]]
		+	[[Category: Oryza sativa Japonica Group]]
		+	[[Category: Li Y]]
		+	[[Category: Lin J]]
		+	[[Category: Lu G]]
		+	[[Category: Wu Z]]
		+	[[Category: Yu Z]]

OCA: Protected "8h1c" [edit=sysop:move=sysop]

OCA — Wed, 19 Oct 2022 17:41:30 GMT

Protected "8h1c" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:41, 19 October 2022

OCA: New page: '''Unreleased structure''' The entry 8h1c is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 19 Oct 2022 17:41:27 GMT

New page: '''Unreleased structure''' The entry 8h1c is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 8h1c is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

8h1c - Revision history

OCA at 17:08, 26 April 2023

OCA: Protected "8h1c" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8h1c is ON HOLD Authors: Description: Category: Unreleased Structures