OCA at 05:59, 11 October 2023

OCA — Wed, 11 Oct 2023 05:59:04 GMT

←Older revision		Revision as of 05:59, 11 October 2023
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 8j83 is ~~ON HOLD until 2025~~-04-29	+	==Crystal structure of formate dehydrogenase from Methylorubrum extorquens AM1==
		+	<StructureSection load='8j83' size='340' side='right'caption='[[8j83]], [[Resolution\|resolution]] 2.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8j83]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylorubrum_extorquens_AM1 Methylorubrum extorquens AM1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8J83 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8J83 FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MGD:2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE+GUANOSINE+DINUCLEOTIDE'>MGD</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=W:TUNGSTEN+ION'>W</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8j83 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8j83 OCA], [https://pdbe.org/8j83 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8j83 RCSB], [https://www.ebi.ac.uk/pdbsum/8j83 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8j83 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/C5ATT7_METEA C5ATT7_METEA]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Formate dehydrogenases (FDHs) catalyze the two-electron oxidation of formate to carbon dioxide. FDHs can be divided into several groups depending on their subunit composition and active-site metal ions. Metal-dependent (Mo- or W-containing) FDHs from prokaryotic organisms belong to the superfamily of molybdenum enzymes and are members of the dimethylsulfoxide reductase family. In this short review, recent progress in the structural analysis of FDHs together with their potential biotechnological applications are summarized.

-	~~Authors~~: ~~Kobayashi~~, A., Taketa, M., Sowa, K., Kano, K., Higuchi, Y., Ogata, H.	+	Structure and function relationship of formate dehydrogenases: an overview of recent progress.,Kobayashi A, Taketa M, Sowa K, Kano K, Higuchi Y, Ogata H IUCrJ. 2023 Sep 1;10(Pt 5):544-554. doi: 10.1107/S2052252523006437. PMID:37668215<ref>PMID:37668215</ref>

-	~~Description: Crystal structure~~ of ~~formate dehydrogenase from Methylorubrum extorquens AM1~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Taketa, M~~]]	+	<div class="pdbe-citations 8j83" style="background-color:#fffaf0;"></div>
-	[[Category: Higuchi, Y]]	+	== References ==
-	[[Category: ~~Ogata, H~~]]	+	<references/>
-	[[Category: ~~Kano, K~~]]	+	__TOC__
-	[[Category: Sowa, K]]	+	</StructureSection>
-	[[Category: ~~Kobayashi, A~~]]	+	[[Category: Large Structures]]
		+	[[Category: Methylorubrum extorquens AM1]]
		+	[[Category: Higuchi Y]]
		+	[[Category: Kano K]]
		+	[[Category: Kobayashi A]]
		+	[[Category: Ogata H]]
		+	[[Category: Sowa K]]
		+	[[Category: Taketa M]]

OCA at 19:37, 28 June 2023

OCA — Wed, 28 Jun 2023 19:37:57 GMT

←Older revision		Revision as of 19:37, 28 June 2023
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8j83 is ON HOLD	+	The entry 8j83 is ON HOLD until 2025-04-29

	Authors: Kobayashi, A., Taketa, M., Sowa, K., Kano, K., Higuchi, Y., Ogata, H.		Authors: Kobayashi, A., Taketa, M., Sowa, K., Kano, K., Higuchi, Y., Ogata, H.

OCA: Protected "8j83" [edit=sysop:move=sysop]

OCA — Wed, 10 May 2023 05:07:30 GMT

Protected "8j83" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:07, 10 May 2023

OCA: New page: '''Unreleased structure''' The entry 8j83 is ON HOLD Authors: Kobayashi, A., Taketa, M., Sowa, K., Kano, K., Higuchi, Y., Ogata, H. Description: Crystal structure of formate dehydrogen...

OCA — Wed, 10 May 2023 05:07:29 GMT

New page: '''Unreleased structure''' The entry 8j83 is ON HOLD Authors: Kobayashi, A., Taketa, M., Sowa, K., Kano, K., Higuchi, Y., Ogata, H. Description: Crystal structure of formate dehydrogen...

New page

'''Unreleased structure'''

The entry 8j83 is ON HOLD

Authors: Kobayashi, A., Taketa, M., Sowa, K., Kano, K., Higuchi, Y., Ogata, H.

Description: Crystal structure of formate dehydrogenase from Methylorubrum extorquens AM1
[[Category: Unreleased Structures]]
[[Category: Taketa, M]]
[[Category: Higuchi, Y]]
[[Category: Ogata, H]]
[[Category: Kano, K]]
[[Category: Sowa, K]]
[[Category: Kobayashi, A]]

8j83 - Revision history

OCA at 05:59, 11 October 2023

OCA at 19:37, 28 June 2023

OCA: Protected "8j83" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8j83 is ON HOLD Authors: Kobayashi, A., Taketa, M., Sowa, K., Kano, K., Higuchi, Y., Ogata, H. Description: Crystal structure of formate dehydrogen...