OCA at 05:19, 15 May 2024

OCA — Wed, 15 May 2024 05:19:20 GMT

←Older revision		Revision as of 05:19, 15 May 2024
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-	'''Unreleased structure'''

-	~~The entry~~ 8jzd is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of Escherichia coli NarJ in complex with the signal peptide of E. coli NarG==
		+	<StructureSection load='8jzd' size='340' side='right'caption='[[8jzd]], [[Resolution\|resolution]] 2.45Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8jzd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8JZD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8JZD FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.45Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8jzd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8jzd OCA], [https://pdbe.org/8jzd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8jzd RCSB], [https://www.ebi.ac.uk/pdbsum/8jzd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8jzd ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/NARJ_ECOLI NARJ_ECOLI] Chaperone required for proper molybdenum cofactor insertion and final assembly of the membrane-bound respiratory nitrate reductase 1. Required for the insertion of the molybdenum into the apo-NarG subunit, maybe by keeping NarG in an appropriate competent-open conformation for the molybdenum cofactor insertion to occur. NarJ maintains the apoNarGH complex in a soluble state. Upon insertion of the molybdenum cofactor, NarJ seems to dissociate from the activated soluble NarGH complex, before its association with the NarI subunit on the membrane.<ref>PMID:16286471</ref> <ref>PMID:1732220</ref> <ref>PMID:9305880</ref> <ref>PMID:9632249</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	In bacteria, NarJ plays an essential role as a redox enzyme maturation protein in the assembly of the nitrate reductase NarGHI by interacting with the N-terminal signal peptide of NarG to facilitate cofactor incorporation into NarG. The purpose of our research was to elucidate the exact mechanism of NarG signal peptide recognition by NarJ. We determined the structures of NarJ alone and in complex with the signal peptide of NarG via X-ray crystallography and verified the NarJ-NarG interaction through mutational, binding, and molecular dynamics simulation studies. NarJ adopts a curved alpha-helix bundle structure with a U-shaped hydrophobic groove on its concave side. This groove accommodates the signal peptide of NarG via a dual binding mode in which the left and right parts of the NarJ groove each interact with two consecutive hydrophobic residues from the N- and C-terminal regions of the NarG signal peptide, respectively, through shape and chemical complementarity. This binding is accompanied by unwinding of the helical structure of the NarG signal peptide and by stabilization of the NarG-binding loop of NarJ. We conclude that NarJ recognizes the NarG signal peptide through a complementary hydrophobic interaction mechanism that mediates a structural rearrangement.

-	~~Authors~~:	+	Complementary hydrophobic interaction of the redox enzyme maturation protein NarJ with the signal peptide of the respiratory nitrate reductase NarG.,Song WS, Kim JH, Namgung B, Cho HY, Shin H, Oh HB, Ha NC, Yoon SI Int J Biol Macromol. 2024 Mar;262(Pt 1):129620. doi: , 10.1016/j.ijbiomac.2024.129620. Epub 2024 Jan 21. PMID:38262549<ref>PMID:38262549</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 8jzd" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Escherichia coli K-12]]
		+	[[Category: Large Structures]]
		+	[[Category: Cho HY]]
		+	[[Category: Kim JH]]
		+	[[Category: Namgung B]]
		+	[[Category: Oh HB]]
		+	[[Category: Song WS]]
		+	[[Category: Yoon SI]]

OCA at 04:41, 19 July 2023

OCA — Wed, 19 Jul 2023 04:41:05 GMT

←Older revision		Revision as of 04:41, 19 July 2023
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8jzd is ON HOLD	+	The entry 8jzd is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "8jzd" [edit=sysop:move=sysop]

OCA — Wed, 12 Jul 2023 04:06:30 GMT

Protected "8jzd" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:06, 12 July 2023

OCA: New page: '''Unreleased structure''' The entry 8jzd is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 12 Jul 2023 04:06:28 GMT

New page: '''Unreleased structure''' The entry 8jzd is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 8jzd is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

8jzd - Revision history

OCA at 05:19, 15 May 2024

OCA at 04:41, 19 July 2023

OCA: Protected "8jzd" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8jzd is ON HOLD Authors: Description: Category: Unreleased Structures