OCA at 08:30, 9 May 2024

OCA — Thu, 09 May 2024 08:30:17 GMT

←Older revision		Revision as of 08:30, 9 May 2024
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-	'''Unreleased structure'''

-	~~The entry~~ 8osm is ~~ON HOLD~~	+	==GTPASE HRAS IN COMPLEX WITH ZN-CYCLEN AT 200 MPA PRESSURE==
		+	<StructureSection load='8osm' size='340' side='right'caption='[[8osm]], [[Resolution\|resolution]] 2.05Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8osm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8OSM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8OSM FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.05Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8osm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8osm OCA], [https://pdbe.org/8osm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8osm RCSB], [https://www.ebi.ac.uk/pdbsum/8osm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8osm ProSAT]</span></td></tr>
		+	</table>
		+	== Disease ==
		+	[https://www.uniprot.org/uniprot/RASH_HUMAN RASH_HUMAN] Defects in HRAS are the cause of faciocutaneoskeletal syndrome (FCSS) [MIM:[https://omim.org/entry/218040 218040]. A rare condition characterized by prenatally increased growth, postnatal growth deficiency, mental retardation, distinctive facial appearance, cardiovascular abnormalities (typically pulmonic stenosis, hypertrophic cardiomyopathy and/or atrial tachycardia), tumor predisposition, skin and musculoskeletal abnormalities.<ref>PMID:16170316</ref> <ref>PMID:16329078</ref> <ref>PMID:16443854</ref> <ref>PMID:17054105</ref> <ref>PMID:18247425</ref> <ref>PMID:18039947</ref> <ref>PMID:19995790</ref> Defects in HRAS are the cause of congenital myopathy with excess of muscle spindles (CMEMS) [MIM:[https://omim.org/entry/218040 218040]. CMEMS is a variant of Costello syndrome.<ref>PMID:17412879</ref> Defects in HRAS may be a cause of susceptibility to Hurthle cell thyroid carcinoma (HCTC) [MIM:[https://omim.org/entry/607464 607464]. Hurthle cell thyroid carcinoma accounts for approximately 3% of all thyroid cancers. Although they are classified as variants of follicular neoplasms, they are more often multifocal and somewhat more aggressive and are less likely to take up iodine than are other follicular neoplasms. Note=Mutations which change positions 12, 13 or 61 activate the potential of HRAS to transform cultured cells and are implicated in a variety of human tumors. Defects in HRAS are a cause of susceptibility to bladder cancer (BLC) [MIM:[https://omim.org/entry/109800 109800]. A malignancy originating in tissues of the urinary bladder. It often presents with multiple tumors appearing at different times and at different sites in the bladder. Most bladder cancers are transitional cell carcinomas. They begin in cells that normally make up the inner lining of the bladder. Other types of bladder cancer include squamous cell carcinoma (cancer that begins in thin, flat cells) and adenocarcinoma (cancer that begins in cells that make and release mucus and other fluids). Bladder cancer is a complex disorder with both genetic and environmental influences. Note=Defects in HRAS are the cause of oral squamous cell carcinoma (OSCC).<ref>PMID:1459726</ref> Defects in HRAS are the cause of Schimmelpenning-Feuerstein-Mims syndrome (SFM) [MIM:[https://omim.org/entry/163200 163200]. A disease characterized by sebaceous nevi, often on the face, associated with variable ipsilateral abnormalities of the central nervous system, ocular anomalies, and skeletal defects. Many oral manifestations have been reported, not only including hypoplastic and malformed teeth, and mucosal papillomatosis, but also ankyloglossia, hemihyperplastic tongue, intraoral nevus, giant cell granuloma, ameloblastoma, bone cysts, follicular cysts, oligodontia, and odontodysplasia. Sebaceous nevi follow the lines of Blaschko and these can continue as linear intraoral lesions, as in mucosal papillomatosis.<ref>PMID:22683711</ref>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/RASH_HUMAN RASH_HUMAN] Ras proteins bind GDP/GTP and possess intrinsic GTPase activity.<ref>PMID:14500341</ref> <ref>PMID:9020151</ref> <ref>PMID:12740440</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	In this work, we experimentally investigate the potency of high pressure to drive a protein toward an excited state where an inhibitor targeted for this state can bind. Ras proteins are small GTPases cycling between active GTP-bound and inactive GDP-bound states. Various states of GTP-bound Ras in active conformation coexist in solution, amongst them, state 2 which binds to effectors, and state 1, weakly populated at ambient conditions, which has a low affinity for effectors. Zn2+-cyclen is an allosteric inhibitor of Ras protein, designed to bind specifically to the state 1. In H-Ras(wt).Mg2+.GppNHp crystals soaked with Zn2+-cyclen, no binding could be observed, as expected in the state 2 conformation which is the dominant state at ambient pressure. Interestingly, Zn2+-cyclen binding is observed at 500 MPa pressure, close to the nucleotide, in Ras protein that is driven by pressure to a state 1 conformer. The unknown binding mode of Zn2+-cyclen to H-Ras can thus be fully characterized in atomic details. As a more general conjunction from our study, high pressure x-ray crystallography turns out to be a powerful method to induce transitions allowing drug binding in proteins that are in low-populated conformations at ambient conditions, enabling the design of specific inhibitors.

-	~~Authors: Colloc''h, N~~., Girard, E., ~~Prange~~, T., Kalbitzer, H.R.	+	High pressure promotes binding of the allosteric inhibitor Zn2+-cyclen in crystals of activated H-Ras.,Girard E, Lopes P, Spoerner M, Dhaussy AC, Prange T, Kalbitzer HR, Colloc'h N Chemistry. 2024 Apr 22:e202400304. doi: 10.1002/chem.202400304. PMID:38647362<ref>PMID:38647362</ref>

-	~~Description: GTPASE HRAS IN COMPLEX WITH ZN~~-~~CYCLEN AT 200 MPA PRESSURE~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: Colloc'~~'H,~~ N]]	+	<div class="pdbe-citations 8osm" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Kalbitzer, H.R~~]]	+	== References ==
-	[[Category: ~~Girard, E~~]]	+	<references/>
-	[[Category: Prange, T]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Homo sapiens]]
		+	[[Category: Large Structures]]
		+	[[Category: Colloc'h N]]
		+	[[Category: Girard E]]
		+	[[Category: Kalbitzer HR]]
		+	[[Category: Prange T]]

OCA at 04:17, 17 April 2024

OCA — Wed, 17 Apr 2024 04:17:47 GMT

←Older revision		Revision as of 04:17, 17 April 2024
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8osm is ON HOLD ~~until Paper Publication~~	+	The entry 8osm is ON HOLD

	Authors: Colloc''h, N., Girard, E., Prange, T., Kalbitzer, H.R.		Authors: Colloc''h, N., Girard, E., Prange, T., Kalbitzer, H.R.
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	Description: GTPASE HRAS IN COMPLEX WITH ZN-CYCLEN AT 200 MPA PRESSURE		Description: GTPASE HRAS IN COMPLEX WITH ZN-CYCLEN AT 200 MPA PRESSURE
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Girard, E]]
	[[Category: Colloc''H, N]]		[[Category: Colloc''H, N]]
	[[Category: Kalbitzer, H.R]]		[[Category: Kalbitzer, H.R]]
		+	[[Category: Girard, E]]
	[[Category: Prange, T]]		[[Category: Prange, T]]

OCA at 06:32, 14 June 2023

OCA — Wed, 14 Jun 2023 06:32:04 GMT

←Older revision		Revision as of 06:32, 14 June 2023
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8osm is ON HOLD	+	The entry 8osm is ON HOLD until Paper Publication

	Authors: Colloc''h, N., Girard, E., Prange, T., Kalbitzer, H.R.		Authors: Colloc''h, N., Girard, E., Prange, T., Kalbitzer, H.R.

OCA: Protected "8osm" [edit=sysop:move=sysop]

OCA — Wed, 26 Apr 2023 15:18:27 GMT

Protected "8osm" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:18, 26 April 2023

OCA: New page: '''Unreleased structure''' The entry 8osm is ON HOLD Authors: Colloc''h, N., Girard, E., Prange, T., Kalbitzer, H.R. Description: GTPASE HRAS IN COMPLEX WITH ZN-CYCLEN AT 200 MPA PRESS...

OCA — Wed, 26 Apr 2023 15:18:26 GMT

New page: '''Unreleased structure''' The entry 8osm is ON HOLD Authors: Colloc''h, N., Girard, E., Prange, T., Kalbitzer, H.R. Description: GTPASE HRAS IN COMPLEX WITH ZN-CYCLEN AT 200 MPA PRESS...

New page

'''Unreleased structure'''

The entry 8osm is ON HOLD

Authors: Colloc''h, N., Girard, E., Prange, T., Kalbitzer, H.R.

Description: GTPASE HRAS IN COMPLEX WITH ZN-CYCLEN AT 200 MPA PRESSURE
[[Category: Unreleased Structures]]
[[Category: Girard, E]]
[[Category: Colloc''H, N]]
[[Category: Kalbitzer, H.R]]
[[Category: Prange, T]]

8osm - Revision history

OCA at 08:30, 9 May 2024

OCA at 04:17, 17 April 2024

OCA at 06:32, 14 June 2023

OCA: Protected "8osm" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8osm is ON HOLD Authors: Colloc''h, N., Girard, E., Prange, T., Kalbitzer, H.R. Description: GTPASE HRAS IN COMPLEX WITH ZN-CYCLEN AT 200 MPA PRESS...