OCA at 10:40, 2 August 2023

OCA — Wed, 02 Aug 2023 10:40:41 GMT

←Older revision		Revision as of 10:40, 2 August 2023
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-	'''Unreleased structure'''

-	~~The entry~~ 8p4y is ~~ON HOLD until Paper~~ Publication	+	==Coiled-coil protein origami triangle==
		+	<StructureSection load='8p4y' size='340' side='right'caption='[[8p4y]], [[Resolution\|resolution]] 2.05Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8p4y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Unidentified Unidentified]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8P4Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8P4Y FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.052Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MEN:N-METHYL+ASPARAGINE'>MEN</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8p4y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8p4y OCA], [https://pdbe.org/8p4y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8p4y RCSB], [https://www.ebi.ac.uk/pdbsum/8p4y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8p4y ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Coiled-coil protein origami (CCPO) uses modular coiled-coil building blocks and topological principles to design polyhedral structures distinct from those of natural globular proteins. While the CCPO strategy has proven successful in designing diverse protein topologies, no high-resolution structural information has been available about these novel protein folds. Here we report the crystal structure of a single-chain CCPO in the shape of a triangle. While neither cyclization nor the addition of nanobodies enabled crystallization, it was ultimately facilitated by the inclusion of a GCN(2) homodimer. Triangle edges are formed by the orthogonal parallel coiled-coil dimers P1:P2, P3:P4, and GCN(2) connected by short linkers. A triangle has a large central cavity and is additionally stabilized by side-chain interactions between neighboring segments at each vertex. The crystal lattice is densely packed and stabilized by a large number of contacts between triangles. Interestingly, the polypeptide chain folds into a trefoil-type protein knot topology, and AlphaFold2 fails to predict the correct fold. The structure validates the modular CC-based protein design strategy, providing molecular insight underlying CCPO stabilization and new opportunities for the design.

-	~~Authors: Satler~~, T., Hadzi, S., Jerala, R.	+	Crystal Structure of de Novo Designed Coiled-Coil Protein Origami Triangle.,Satler T, Hadzi S, Jerala R J Am Chem Soc. 2023 Jul 24. doi: 10.1021/jacs.3c05531. PMID:37486611<ref>PMID:37486611</ref>

-	~~Description: Coiled~~-~~coil protein origami triangle~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Hadzi, S~~]]	+	<div class="pdbe-citations 8p4y" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Satler, T~~]]	+	== References ==
-	[[Category: Jerala, R]]	+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Unidentified]]
		+	[[Category: Hadzi S]]
		+	[[Category: Jerala R]]
		+	[[Category: Satler T]]

OCA at 19:47, 28 June 2023

OCA — Wed, 28 Jun 2023 19:47:40 GMT

←Older revision		Revision as of 19:47, 28 June 2023
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8p4y is ON HOLD	+	The entry 8p4y is ON HOLD until Paper Publication

	Authors: Satler, T., Hadzi, S., Jerala, R.		Authors: Satler, T., Hadzi, S., Jerala, R.

OCA: Protected "8p4y" [edit=sysop:move=sysop]

OCA — Wed, 31 May 2023 04:07:59 GMT

Protected "8p4y" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:07, 31 May 2023

OCA: New page: '''Unreleased structure''' The entry 8p4y is ON HOLD Authors: Satler, T., Hadzi, S., Jerala, R. Description: Coiled-coil protein origami triangle Category: Unreleased Structures [[...

OCA — Wed, 31 May 2023 04:07:58 GMT

New page: '''Unreleased structure''' The entry 8p4y is ON HOLD Authors: Satler, T., Hadzi, S., Jerala, R. Description: Coiled-coil protein origami triangle Category: Unreleased Structures [[...

New page

'''Unreleased structure'''

The entry 8p4y is ON HOLD

Authors: Satler, T., Hadzi, S., Jerala, R.

Description: Coiled-coil protein origami triangle
[[Category: Unreleased Structures]]
[[Category: Hadzi, S]]
[[Category: Satler, T]]
[[Category: Jerala, R]]

8p4y - Revision history

OCA at 10:40, 2 August 2023

OCA at 19:47, 28 June 2023

OCA: Protected "8p4y" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8p4y is ON HOLD Authors: Satler, T., Hadzi, S., Jerala, R. Description: Coiled-coil protein origami triangle Category: Unreleased Structures [[...