OCA at 23:14, 27 December 2023

OCA — Wed, 27 Dec 2023 23:14:18 GMT

←Older revision		Revision as of 23:14, 27 December 2023
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-	'''Unreleased structure'''

-	~~The entry~~ 8pzq is ~~ON HOLD until Paper~~ Publication	+	==Model for focused reconstruction of influenza A RNP-like particle==
		+	<StructureSection load='8pzq' size='340' side='right'caption='[[8pzq]], [[Resolution\|resolution]] 5.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8pzq]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Influenza_A_virus Influenza A virus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8PZQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8PZQ FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 5.3Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8pzq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8pzq OCA], [https://pdbe.org/8pzq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8pzq RCSB], [https://www.ebi.ac.uk/pdbsum/8pzq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8pzq ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q1K9H2_I33A0 Q1K9H2_I33A0] Encapsidates the negative strand viral RNA, protecting it from nucleases. The encapsidated genomic RNA is termed the ribonucleoprotein (RNP) and serves as template for transcription and replication. The RNP needs to be localized in the nucleus to start an infectious cycle, but is too large to diffuse through the nuclear pore complex. NP comprises at least 2 nuclear localization signals and is responsible of the active RNP import into the nucleus through the cellular importin alpha/beta pathway. Later in the infection, nucleus export of RNP are mediated through viral proteins NEP interacting with M1 which binds nucleoproteins. It is possible that the nucleoprotein binds directly exportin-1 (XPO1) and plays an active role in RNP nuclear export. M1 interaction with RNP seems to hide nucleoprotein's nuclear localization signals. Soon after a virion infects a new cell, M1 dissociates from the RNP under acidification of the virion driven by M2 protein. Dissociation of M1 from RNP unmask nucleoprotein's nuclear localization signals, targeting the RNP to the nucleus (By similarity).[SAAS:SAAS002141_004_603280]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Influenza virus genome encapsidation is essential for the formation of a helical viral ribonucleoprotein (vRNP) complex composed of nucleoproteins (NP), the trimeric polymerase, and the viral genome. Although low-resolution vRNP structures are available, it remains unclear how the viral RNA is encapsidated and how NPs assemble into the helical filament specific of influenza vRNPs. In this study, we established a biological tool, the RNP-like particles assembled from recombinant influenza A virus NP and synthetic RNA, and we present the first subnanometric cryo-electron microscopy structure of the helical NP-RNA complex (8.7 to 5.3 A). The helical RNP-like structure reveals a parallel double-stranded conformation, allowing the visualization of NP-NP and NP-RNA interactions. The RNA, located at the interface of neighboring NP protomers, interacts with conserved residues previously described as essential for the NP-RNA interaction. The NP undergoes conformational changes to enable RNA binding and helix formation. Together, our findings provide relevant insights for understanding the mechanism for influenza genome encapsidation.

-	~~Authors~~:	+	Cryo-EM structure of influenza helical nucleocapsid reveals NP-NP and NP-RNA interactions as a model for the genome encapsidation.,Chenavier F, Estrozi LF, Teulon JM, Zarkadas E, Freslon LL, Pellequer JL, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crepin T Sci Adv. 2023 Dec 15;9(50):eadj9974. doi: 10.1126/sciadv.adj9974. Epub 2023 Dec , 15. PMID:38100595<ref>PMID:38100595</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 8pzq" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Influenza A virus]]
		+	[[Category: Large Structures]]
		+	[[Category: Synthetic construct]]
		+	[[Category: Ballandras-Colas A]]
		+	[[Category: Chenavier F]]
		+	[[Category: Crepin T]]
		+	[[Category: Estrozi LF]]
		+	[[Category: Ruigrok RWH]]
		+	[[Category: Schoehn G]]
		+	[[Category: Zarkadas E]]

OCA at 10:46, 4 October 2023

OCA — Wed, 04 Oct 2023 10:46:07 GMT

←Older revision		Revision as of 10:46, 4 October 2023
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8pzq is ON HOLD	+	The entry 8pzq is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "8pzq" [edit=sysop:move=sysop]

OCA — Wed, 02 Aug 2023 09:17:12 GMT

Protected "8pzq" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:17, 2 August 2023

OCA: New page: '''Unreleased structure''' The entry 8pzq is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 02 Aug 2023 09:17:11 GMT

New page: '''Unreleased structure''' The entry 8pzq is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 8pzq is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

8pzq - Revision history

OCA at 23:14, 27 December 2023

OCA at 10:46, 4 October 2023

OCA: Protected "8pzq" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8pzq is ON HOLD Authors: Description: Category: Unreleased Structures