OCA at 08:04, 22 May 2024

OCA — Wed, 22 May 2024 08:04:54 GMT

←Older revision		Revision as of 08:04, 22 May 2024
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-	'''Unreleased structure'''

-	~~The entry~~ 8rpz is ~~ON HOLD until Paper~~ Publication	+	==Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I==
		+	<StructureSection load='8rpz' size='340' side='right'caption='[[8rpz]], [[Resolution\|resolution]] 2.44Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8rpz]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Apis_mellifera Apis mellifera] and [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8RPZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8RPZ FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 2.44Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8rpz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8rpz OCA], [https://pdbe.org/8rpz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8rpz RCSB], [https://www.ebi.ac.uk/pdbsum/8rpz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8rpz ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/RL18_ECOLI RL18_ECOLI] This is one of the proteins that mediates the attachment of the 5S rRNA subcomplex onto the large ribosomal subunit where it forms part of the central protuberance. Binds stably to 5S rRNA; increases binding abilities of L5 in a cooperative fashion; both proteins together confer 23S rRNA binding. The 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.<ref>PMID:353728</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Proline-rich antimicrobial peptides (PrAMPs) inhibit bacterial protein biosynthesis by binding to the polypeptide exit tunnel (PET) near the peptidyl transferase center. Api137, an optimized derivative of honeybee PrAMP apidaecin, inhibits protein expression by trapping release factors (RFs), which interact with stop codons on ribosomes to terminate translation. This study uses cryo-EM, functional assays and molecular dynamic (MD) simulations to show that Api137 additionally occupies a second binding site near the exit of the PET and can repress translation independently of RF-trapping. Api88, a C-terminally amidated (-CONH(2)) analog of Api137 (-COOH), binds to the same sites, occupies a third binding pocket and interferes with the translation process presumably without RF-trapping. In conclusion, apidaecin-derived PrAMPs inhibit bacterial ribosomes by multimodal mechanisms caused by minor structural changes and thus represent a promising pool for drug development efforts.

-	~~Authors~~:	+	Multimodal binding and inhibition of bacterial ribosomes by the antimicrobial peptides Api137 and Api88.,Lauer SM, Reepmeyer M, Berendes O, Klepacki D, Gasse J, Gabrielli S, Grubmuller H, Bock LV, Krizsan A, Nikolay R, Spahn CMT, Hoffmann R Nat Commun. 2024 May 10;15(1):3945. doi: 10.1038/s41467-024-48027-4. PMID:38730238<ref>PMID:38730238</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 8rpz" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Apis mellifera]]
		+	[[Category: Escherichia coli]]
		+	[[Category: Large Structures]]
		+	[[Category: Lauer S]]
		+	[[Category: Nikolay R]]
		+	[[Category: Spahn C]]

OCA at 07:45, 21 February 2024

OCA — Wed, 21 Feb 2024 07:45:00 GMT

←Older revision		Revision as of 07:45, 21 February 2024
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8rpz is ON HOLD	+	The entry 8rpz is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "8rpz" [edit=sysop:move=sysop]

OCA — Wed, 24 Jan 2024 10:14:57 GMT

Protected "8rpz" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:14, 24 January 2024

OCA: New page: '''Unreleased structure''' The entry 8rpz is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 24 Jan 2024 10:14:56 GMT

New page: '''Unreleased structure''' The entry 8rpz is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 8rpz is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

8rpz - Revision history

OCA at 08:04, 22 May 2024

OCA at 07:45, 21 February 2024

OCA: Protected "8rpz" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8rpz is ON HOLD Authors: Description: Category: Unreleased Structures