OCA at 08:05, 6 December 2023

OCA — Wed, 06 Dec 2023 08:05:31 GMT

←Older revision		Revision as of 08:05, 6 December 2023
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-	'''Unreleased structure'''

-	The entry ~~8t7v~~ is ~~ON HOLD until Paper~~ Publication	+	==Co-crystal structure of KRIT1 with a 1-hydroxy 2-naphthaldehyde derivative (6-(furan-2-yl)-2-hydroxy-1-naphthaldehyde)==
		+	<StructureSection load='8t7v' size='340' side='right'caption='[[8t7v]], [[Resolution\|resolution]] 2.25Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8t7v]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8T7V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8T7V FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.25Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GNP:PHOSPHOAMINOPHOSPHONIC+ACID-GUANYLATE+ESTER'>GNP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=ZTA:(7M)-7-(furan-2-yl)-2-hydroxynaphthalene-1-carbaldehyde'>ZTA</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8t7v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8t7v OCA], [https://pdbe.org/8t7v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8t7v RCSB], [https://www.ebi.ac.uk/pdbsum/8t7v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8t7v ProSAT]</span></td></tr>
		+	</table>
		+	== Disease ==
		+	[https://www.uniprot.org/uniprot/KRIT1_HUMAN KRIT1_HUMAN] Hereditary cerebral cavernous malformation. Cerebral cavernous malformations 1 (CCM1) [MIM:[https://omim.org/entry/116860 116860]: A congenital vascular anomaly of the central nervous system that can result in hemorrhagic stroke, seizures, recurrent headaches, and focal neurologic deficits. The lesions are characterized by grossly enlarged blood vessels consisting of a single layer of endothelium and without any intervening neural tissue, ranging in diameter from a few millimeters to several centimeters. Note=The disease is caused by mutations affecting the gene represented in this entry.<ref>PMID:12172908</ref>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/KRIT1_HUMAN KRIT1_HUMAN] Component of the CCM signaling pathway which is a crucial regulator of heart and vessel formation and integrity (By similarity). Negative regulator of angiogenesis. Inhibits endothelial proliferation, apoptosis, migration, lumen formation and sprouting angiogenesis in primary endothelial cells. Promotes AKT phosphorylation in a NOTCH-dependent and independent manner, and inhibits EKR1/2 phosphorylation indirectly through activation of the DELTA-NOTCH cascade. Acts in concert with CDH5 to establish and maintain correct endothelial cell polarity and vascular lumen and these effects are mediated by recruitment and activation of the Par polarity complex and RAP1B. Required for the localization of phosphorylated PRKCZ, PARD3, TIAM1 and RAP1B to the cell junction, and cell junction stabilization. Plays a role in integrin signaling via its interaction with ITGB1BP1; this prevents the interaction between ITGB1 and ITGB1BP1. Plays an important role in the maintenance of the intracellular reactive oxygen species (ROS) homeostasis to prevent oxidative cellular damage. Regulates the homeostasis of intracellular ROS through an antioxidant pathway involving FOXO1 and SOD2. Facilitates the down-regulation of cyclin-D1 (CCND1) levels required for cell transition from proliferative growth to quiescence by preventing the accumulation of intracellular ROS through the modulation of FOXO1 and SOD2 levels.<ref>PMID:20332120</ref> <ref>PMID:20668652</ref> <ref>PMID:20616044</ref> <ref>PMID:21633110</ref> [REFERENCE:17]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The covalent reversible modification of proteins is a validated strategy for the development of probes and candidate therapeutics. However, the covalent reversible targeting of noncatalytic lysines is particularly challenging. Herein, we characterize the 2-hydroxy-1-naphthaldehyde (HNA) fragment as a targeted covalent reversible ligand of a noncatalytic lysine (Lys(720)) of the Krev interaction trapped 1 (KRIT1) protein. We show that the interaction of HNA with KRIT1 is highly specific, results in prolonged residence time of >8 h, and inhibits the Heart of glass 1 (HEG1)-KRIT1 protein-protein interaction (PPI). Screening of HNA derivatives identified analogs exhibiting similar binding modes as the parent fragment but faster target engagement and stronger inhibition activity. These results demonstrate that HNA is an efficient site-directing fragment with promise in developing HEG1-KRIT1 PPI inhibitors. Further, the aldimine chemistry, when coupled with templating effects that promote proximity, can produce a long-lasting reversible covalent modification of noncatalytic lysines.

-	~~Authors:~~ Bruystens, J.G.H.	+	Targeted Reversible Covalent Modification of a Noncatalytic Lysine of the Krev Interaction Trapped 1 Protein Enables Site-Directed Screening for Protein-Protein Interaction Inhibitors.,Francisco KR, Bruystens J, Varricchio C, McCurdy S, Wu J, Lopez-Ramirez MA, Ginsberg M, Caffrey CR, Brancale A, Gingras AR, Hixon MS, Ballatore C ACS Pharmacol Transl Sci. 2023 Oct 9;6(11):1651-1658. doi: , 10.1021/acsptsci.3c00156. eCollection 2023 Nov 10. PMID:37974623<ref>PMID:37974623</ref>

-	~~Description: Co-crystal structure of KRIT1 with~~ a ~~1-hydroxy 2-naphthaldehyde derivative (6~~-~~(furan~~-~~2-yl)-2-hydroxy-1-naphthaldehyde)~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: Bruystens~~, J.G.H~~]]	+	<div class="pdbe-citations 8t7v" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Homo sapiens]]
		+	[[Category: Large Structures]]
		+	[[Category: Bruystens JGH]]

OCA at 04:12, 9 August 2023

OCA — Wed, 09 Aug 2023 04:12:43 GMT

←Older revision		Revision as of 04:12, 9 August 2023
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8t7v is ON HOLD	+	The entry 8t7v is ON HOLD until Paper Publication

	Authors: Bruystens, J.G.H.		Authors: Bruystens, J.G.H.

OCA at 04:34, 12 July 2023

OCA — Wed, 12 Jul 2023 04:34:33 GMT

←Older revision		Revision as of 04:34, 12 July 2023
Line 5:		Line 5:
	Authors: Bruystens, J.G.H.		Authors: Bruystens, J.G.H.

-	Description: Co-crystal structure of KRIT1 with a 1-hydroxy 2-naphthaldehyde derivative (6-(furan-2-yl)-2-hydroxy-1-naphthaldehyde).	+	Description: Co-crystal structure of KRIT1 with a 1-hydroxy 2-naphthaldehyde derivative (6-(furan-2-yl)-2-hydroxy-1-naphthaldehyde)
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Bruystens, J.G.H]]		[[Category: Bruystens, J.G.H]]

OCA: Protected "8t7v" [edit=sysop:move=sysop]

OCA — Wed, 28 Jun 2023 20:08:08 GMT

Protected "8t7v" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:08, 28 June 2023

OCA: New page: '''Unreleased structure''' The entry 8t7v is ON HOLD Authors: Bruystens, J.G.H. Description: Co-crystal structure of KRIT1 with a 1-hydroxy 2-naphthaldehyde derivative (6-(furan-2-yl)-...

OCA — Wed, 28 Jun 2023 20:08:05 GMT

New page: '''Unreleased structure''' The entry 8t7v is ON HOLD Authors: Bruystens, J.G.H. Description: Co-crystal structure of KRIT1 with a 1-hydroxy 2-naphthaldehyde derivative (6-(furan-2-yl)-...

New page

'''Unreleased structure'''

The entry 8t7v is ON HOLD

Authors: Bruystens, J.G.H.

Description: Co-crystal structure of KRIT1 with a 1-hydroxy 2-naphthaldehyde derivative (6-(furan-2-yl)-2-hydroxy-1-naphthaldehyde).
[[Category: Unreleased Structures]]
[[Category: Bruystens, J.G.H]]

8t7v - Revision history

OCA at 08:05, 6 December 2023

OCA at 04:12, 9 August 2023

OCA at 04:34, 12 July 2023

OCA: Protected "8t7v" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8t7v is ON HOLD Authors: Bruystens, J.G.H. Description: Co-crystal structure of KRIT1 with a 1-hydroxy 2-naphthaldehyde derivative (6-(furan-2-yl)-...