OCA at 13:15, 1 November 2023

OCA — Wed, 01 Nov 2023 13:15:34 GMT

←Older revision		Revision as of 13:15, 1 November 2023
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 8tjq is ~~ON HOLD~~	+	==Tetrahymena Ribozyme scaffolded Zika Virus xrRNA==
		+	<StructureSection load='8tjq' size='340' side='right'caption='[[8tjq]], [[Resolution\|resolution]] 3.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8tjq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Tetrahymena Tetrahymena] and [https://en.wikipedia.org/wiki/Zika_virus Zika virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8TJQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8TJQ FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.4Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8tjq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8tjq OCA], [https://pdbe.org/8tjq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8tjq RCSB], [https://www.ebi.ac.uk/pdbsum/8tjq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8tjq ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Single-particle cryo-electron microscopy (cryo-EM) can reveal the structures of large and often dynamic molecules, but smaller biomolecules (</=50 kDa) remain challenging targets due to their intrinsic low signal to noise ratio. Methods to help resolve small proteins have been applied but development of similar approaches to aid in structural determination of small, structured RNA elements have lagged. Here, we present a scaffold-based approach that we used to recover maps of sub-25 kDa RNA domains to 4.5-5.0 A. While lacking the detail of true high-resolution maps, these maps are suitable for model building and preliminary structure determination. We demonstrate this method helped faithfully recover the structure of several RNA elements of known structure, and that it promises to be generalized to other RNAs without disturbing their native fold. This approach may streamline the sample preparation process and reduce the optimization required for data collection. This first-generation scaffold approach provides a robust system to aid in RNA structure determination by cryo-EM and lays the groundwork for further scaffold optimization to achieve higher resolution.

-	~~Authors:~~ Langeberg, C.J.~~, Kieft, J~~.S.	+	A generalizable scaffold-based approach for structure determination of RNAs by cryo-EM.,Langeberg CJ, Kieft JS Nucleic Acids Res. 2023 Oct 4:gkad784. doi: 10.1093/nar/gkad784. PMID:37791881<ref>PMID:37791881</ref>

-	~~Description~~: ~~Tetrahymena Ribozyme scaffolded Zika Virus xrRNA~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Langeberg, C.J~~]]	+	<div class="pdbe-citations 8tjq" style="background-color:#fffaf0;"></div>
-	[[Category: Kieft~~, J.S~~]]	+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Tetrahymena]]
		+	[[Category: Zika virus]]
		+	[[Category: Kieft JS]]
		+	[[Category: Langeberg CJ]]

OCA: Protected "8tjq" [edit=sysop:move=sysop]

OCA — Wed, 02 Aug 2023 09:24:11 GMT

Protected "8tjq" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:24, 2 August 2023

OCA: New page: '''Unreleased structure''' The entry 8tjq is ON HOLD Authors: Langeberg, C.J., Kieft, J.S. Description: Tetrahymena Ribozyme scaffolded Zika Virus xrRNA [[Category: Unreleased Structur...

OCA — Wed, 02 Aug 2023 09:24:10 GMT

New page: '''Unreleased structure''' The entry 8tjq is ON HOLD Authors: Langeberg, C.J., Kieft, J.S. Description: Tetrahymena Ribozyme scaffolded Zika Virus xrRNA [[Category: Unreleased Structur...

New page

'''Unreleased structure'''

The entry 8tjq is ON HOLD

Authors: Langeberg, C.J., Kieft, J.S.

Description: Tetrahymena Ribozyme scaffolded Zika Virus xrRNA
[[Category: Unreleased Structures]]
[[Category: Langeberg, C.J]]
[[Category: Kieft, J.S]]

8tjq - Revision history

OCA at 13:15, 1 November 2023

OCA: Protected "8tjq" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8tjq is ON HOLD Authors: Langeberg, C.J., Kieft, J.S. Description: Tetrahymena Ribozyme scaffolded Zika Virus xrRNA [[Category: Unreleased Structur...