OCA at 05:24, 15 May 2024

OCA — Wed, 15 May 2024 05:24:54 GMT

←Older revision		Revision as of 05:24, 15 May 2024
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-	'''Unreleased structure'''

-	~~The entry~~ 8tpo is ~~ON HOLD~~	+	==nhTMEM16 R432A mutant in lipid nanodiscs with MSP1E3 scaffold protein in the presence of Ca2+==
		+	<StructureSection load='8tpo' size='340' side='right'caption='[[8tpo]], [[Resolution\|resolution]] 3.59Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8tpo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Fusarium_vanettenii_77-13-4 Fusarium vanettenii 77-13-4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8TPO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8TPO FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.59Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PGW:(1R)-2-{[(S)-{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(HEXADECANOYLOXY)METHYL]ETHYL+(9Z)-OCTADEC-9-ENOATE'>PGW</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8tpo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8tpo OCA], [https://pdbe.org/8tpo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8tpo RCSB], [https://www.ebi.ac.uk/pdbsum/8tpo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8tpo ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/C7Z7K1_FUSV7 C7Z7K1_FUSV7]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Activation of Ca(2+)-dependent TMEM16 scramblases induces phosphatidylserine externalization, a key step in multiple signaling processes. Current models suggest that the TMEM16s scramble lipids by deforming the membrane near a hydrophilic groove and that Ca(2+) dependence arises from the different association of lipids with an open or closed groove. However, the molecular rearrangements underlying groove opening and how lipids reorganize outside the closed groove remain unknown. Here we directly visualize how lipids associate at the closed groove of Ca(2+)-bound fungal nhTMEM16 in nanodiscs using cryo-EM. Functional experiments pinpoint lipid-protein interaction sites critical for closed groove scrambling. Structural and functional analyses suggest groove opening entails the sequential appearance of two pi-helical turns in the groove-lining TM6 helix and identify critical rearrangements. Finally, we show that the choice of scaffold protein and lipids affects the conformations of nhTMEM16 and their distribution, highlighting a key role of these factors in cryo-EM structure determination.

-	~~Authors~~:	+	Structural basis of closed groove scrambling by a TMEM16 protein.,Feng Z, Alvarenga OE, Accardi A Nat Struct Mol Biol. 2024 Apr 29. doi: 10.1038/s41594-024-01284-9. PMID:38684930<ref>PMID:38684930</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 8tpo" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Fusarium vanettenii 77-13-4]]
		+	[[Category: Large Structures]]
		+	[[Category: Accardi A]]
		+	[[Category: Feng Z]]

OCA: Protected "8tpo" [edit=sysop:move=sysop]

OCA — Wed, 16 Aug 2023 06:56:56 GMT

Protected "8tpo" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:56, 16 August 2023

OCA: New page: '''Unreleased structure''' The entry 8tpo is ON HOLD Authors: Description: Category: Unreleased Structures

OCA — Wed, 16 Aug 2023 06:56:55 GMT

New page: '''Unreleased structure''' The entry 8tpo is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 8tpo is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]

8tpo - Revision history

OCA at 05:24, 15 May 2024

OCA: Protected "8tpo" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8tpo is ON HOLD Authors: Description: Category: Unreleased Structures