OCA at 14:49, 20 September 2023

OCA — Wed, 20 Sep 2023 14:49:34 GMT

←Older revision		Revision as of 14:49, 20 September 2023
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 8tt1 is ~~ON HOLD~~	+	==Pseudomonas fluorescens isocyanide hydratase pH=5.0==
		+	<StructureSection load='8tt1' size='340' side='right'caption='[[8tt1]], [[Resolution\|resolution]] 1.45Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8tt1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8TT1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8TT1 FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.45Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8tt1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8tt1 OCA], [https://pdbe.org/8tt1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8tt1 RCSB], [https://www.ebi.ac.uk/pdbsum/8tt1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8tt1 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q4K977_PSEF5 Q4K977_PSEF5]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Enzymes populate ensembles of structures with intrinsically different catalytic proficiencies that are difficult to experimentally characterize. We use time-resolved mix-and-inject serial crystallography (MISC) at an X-ray free electron laser (XFEL) to observe catalysis in a designed mutant (G150T) isocyanide hydratase (ICH) enzyme that enhances sampling of important minor conformations. The active site exists in a mixture of conformations and formation of the thioimidate catalytic intermediate selects for catalytically competent substates. A prior proposal for active site cysteine charge-coupled conformational changes in ICH is validated by determining structures of the enzyme over a range of pH values. A combination of large molecular dynamics simulations of the enzyme in crystallo and time-resolved electron density maps shows that ionization of the general acid Asp17 during catalysis causes additional conformational changes that propagate across the dimer interface, connecting the two active sites. These ionization-linked changes in the ICH conformational ensemble permit water to enter the active site in a location that is poised for intermediate hydrolysis. ICH exhibits a tight coupling between ionization of active site residues and catalysis-activated protein motions, exemplifying a mechanism of electrostatic control of enzyme dynamics.

-	~~Authors: Wilson, M.A~~., Smith, N., Dasgupta, M., Dolamore, C.	+	Changes in an Enzyme Ensemble During Catalysis Observed by High Resolution XFEL Crystallography.,Smith N, Dasgupta M, Wych DC, Dolamore C, Sierra RG, Lisova S, Marchany-Rivera D, Cohen AE, Boutet S, Hunter MS, Kupitz C, Poitevin F, Moss FR, Brewster AS, Sauter NK, Young ID, Wolff AM, Tiwari VK, Kumar N, Berkowitz DB, Hadt RG, Thompson MC, Follmer AH, Wall ME, Wilson MA bioRxiv. 2023 Aug 16:2023.08.15.553460. doi: 10.1101/2023.08.15.553460. Preprint. PMID:37645800<ref>PMID:37645800</ref>

-	~~Description~~: ~~Pseudomonas fluorescens isocyanide hydratase pH~~=~~5.0~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Dasgupta, M~~]]	+	<div class="pdbe-citations 8tt1" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Wilson,~~ M.A]]	+	== References ==
-	[[Category: Dolamore, C]]	+	<references/>
-	[[Category: Smith, N]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Pseudomonas fluorescens]]
		+	[[Category: Dasgupta M]]
		+	[[Category: Dolamore C]]
		+	[[Category: Smith N]]
		+	[[Category: Wilson MA]]

OCA: Protected "8tt1" [edit=sysop:move=sysop]

OCA — Wed, 23 Aug 2023 04:49:49 GMT

Protected "8tt1" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:49, 23 August 2023

OCA: New page: '''Unreleased structure''' The entry 8tt1 is ON HOLD Authors: Wilson, M.A., Smith, N., Dasgupta, M., Dolamore, C. Description: Pseudomonas fluorescens isocyanide hydratase pH=5.0 [[Cat...

OCA — Wed, 23 Aug 2023 04:49:47 GMT

New page: '''Unreleased structure''' The entry 8tt1 is ON HOLD Authors: Wilson, M.A., Smith, N., Dasgupta, M., Dolamore, C. Description: Pseudomonas fluorescens isocyanide hydratase pH=5.0 [[Cat...

New page

'''Unreleased structure'''

The entry 8tt1 is ON HOLD

Authors: Wilson, M.A., Smith, N., Dasgupta, M., Dolamore, C.

Description: Pseudomonas fluorescens isocyanide hydratase pH=5.0
[[Category: Unreleased Structures]]
[[Category: Dasgupta, M]]
[[Category: Wilson, M.A]]
[[Category: Dolamore, C]]
[[Category: Smith, N]]

8tt1 - Revision history

OCA at 14:49, 20 September 2023

OCA: Protected "8tt1" [edit=sysop:move=sysop]

OCA: New page: '''Unreleased structure''' The entry 8tt1 is ON HOLD Authors: Wilson, M.A., Smith, N., Dasgupta, M., Dolamore, C. Description: Pseudomonas fluorescens isocyanide hydratase pH=5.0 [[Cat...