8wu7 - Revision history

OCA at 08:40, 9 May 2024

OCA — Thu, 09 May 2024 08:40:47 GMT

←Older revision		Revision as of 08:40, 9 May 2024
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-	'''Unreleased structure'''

-	~~The entry~~ 8wu7 is ~~ON HOLD until Paper~~ Publication	+	==Structure of a cis-Geranylfarnesyl Diphosphate Synthase from Streptomyces clavuligerus==
		+	<StructureSection load='8wu7' size='340' side='right'caption='[[8wu7]], [[Resolution\|resolution]] 2.09Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[8wu7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_clavuligerus Streptomyces clavuligerus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8WU7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8WU7 FirstGlance]. <br>
		+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.09Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8wu7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8wu7 OCA], [https://pdbe.org/8wu7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8wu7 RCSB], [https://www.ebi.ac.uk/pdbsum/8wu7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8wu7 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/D5SL65_STRCL D5SL65_STRCL] Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.[HAMAP-Rule:MF_01139]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	cis-Prenyltransferases (cis-PTs) catalyze the sequential head-to-tail condensation of isopentenyl diphosphate (IPP) to allylic diphosphates, producing mixed E-Z prenyl diphosphates of varying lengths; yet, the specific enzymes synthesizing cis-C25 prenyl diphosphates have not been identified. In this study, we present the discovery and characterization of a cis-geranylfarnesyl diphosphate synthase (ScGFPPS) from Streptomyces clavuligerus. This enzyme demonstrates high catalytic proficiency in generating six distinct cis-polyisoprenoids, including three C25 and three C20 variants. We further determine the crystal structure of ScGFPPS. Additionally, we unveil the crystal structure of nerylneryl diphosphate synthase (NNPS), known for synthesizing an all-cis-C20 polyisoprenoid. Comparative structural analysis of ScGFPPS and NNPS has identified key differences that influence product specificity. Through site-directed mutagenesis, we have identified eight single mutations that significantly refine ScGFPPS's selectivity for cis-polyisoprenoids. Our findings not only expand the functional spectrum of cis-PTs but also provide a structural comparison strategy in cis-PTs engineering.

-	~~Authors: Li~~, ~~F.R~~., ~~Wang~~, Q~~.L.~~, Pan, X~~.M.~~, ~~Dong~~, L.B.	+	Discovery, Structure, and Engineering of a cis-Geranylfarnesyl Diphosphate Synthase.,Li FR, Wang Q, Pan X, Xu HM, Dong LB Angew Chem Int Ed Engl. 2024 Apr 23:e202401669. doi: 10.1002/anie.202401669. PMID:38651244<ref>PMID:38651244</ref>

-	~~Description: Structure of~~ a ~~cis~~-~~Geranylfarnesyl Diphosphate Synthase from Streptomyces clavuligerus~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Wang, Q.L~~]]	+	<div class="pdbe-citations 8wu7" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Pan, X.M~~]]	+	== References ==
-	[[Category: Li~~, F.R~~]]	+	<references/>
-	[[Category: ~~Dong, L.B~~]]	+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Streptomyces clavuligerus]]
		+	[[Category: Dong LB]]
		+	[[Category: Li FR]]
		+	[[Category: Pan XM]]
		+	[[Category: Wang QL]]

OCA at 09:51, 29 November 2023

OCA — Wed, 29 Nov 2023 09:51:59 GMT

←Older revision		Revision as of 09:51, 29 November 2023
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 8wu7 is ON HOLD	+	The entry 8wu7 is ON HOLD until Paper Publication

	Authors: Li, F.R., Wang, Q.L., Pan, X.M., Dong, L.B.		Authors: Li, F.R., Wang, Q.L., Pan, X.M., Dong, L.B.
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	Description: Structure of a cis-Geranylfarnesyl Diphosphate Synthase from Streptomyces clavuligerus		Description: Structure of a cis-Geranylfarnesyl Diphosphate Synthase from Streptomyces clavuligerus
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Dong, L.B]]
	[[Category: Wang, Q.L]]		[[Category: Wang, Q.L]]
	[[Category: Pan, X.M]]		[[Category: Pan, X.M]]
	[[Category: Li, F.R]]		[[Category: Li, F.R]]
		+	[[Category: Dong, L.B]]

OCA at 11:14, 1 November 2023

OCA — Wed, 01 Nov 2023 11:14:14 GMT

←Older revision		Revision as of 11:14, 1 November 2023
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	Authors: Li, F.R., Wang, Q.L., Pan, X.M., Dong, L.B.		Authors: Li, F.R., Wang, Q.L., Pan, X.M., Dong, L.B.

-	Description: Structure of a cis-Geranylfarnesyl Diphosphate Synthase	+	Description: Structure of a cis-Geranylfarnesyl Diphosphate Synthase from Streptomyces clavuligerus
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Dong, L.B]]		[[Category: Dong, L.B]]

OCA: Protected "8wu7" [edit=sysop:move=sysop]

OCA — Wed, 25 Oct 2023 06:11:45 GMT

Protected "8wu7" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:11, 25 October 2023

OCA: New page: '''Unreleased structure''' The entry 8wu7 is ON HOLD Authors: Li, F.R., Wang, Q.L., Pan, X.M., Dong, L.B. Description: Structure of a cis-Geranylfarnesyl Diphosphate Synthase [[Categor...

OCA — Wed, 25 Oct 2023 06:11:44 GMT

New page: '''Unreleased structure''' The entry 8wu7 is ON HOLD Authors: Li, F.R., Wang, Q.L., Pan, X.M., Dong, L.B. Description: Structure of a cis-Geranylfarnesyl Diphosphate Synthase [[Categor...

New page

'''Unreleased structure'''

The entry 8wu7 is ON HOLD

Authors: Li, F.R., Wang, Q.L., Pan, X.M., Dong, L.B.

Description: Structure of a cis-Geranylfarnesyl Diphosphate Synthase
[[Category: Unreleased Structures]]
[[Category: Dong, L.B]]
[[Category: Wang, Q.L]]
[[Category: Pan, X.M]]
[[Category: Li, F.R]]