ATPase 3D structures - Revision history

Joel L. Sussman at 04:13, 3 August 2023

Joel L. Sussman — Thu, 03 Aug 2023 04:13:55 GMT

←Older revision		Revision as of 04:13, 3 August 2023
Line 298:		Line 298:
	*''Na+ transporting ATPase''		*''Na+ transporting ATPase''

-	**[[2db4~~]], [[8igu~~]] - EhATPase subunit K <br />	+	**[[2db4]] - EhATPase subunit K <br />
	**[[3aon]] - EhATPase subunits D,G<br />		**[[3aon]] - EhATPase subunits D,G<br />
-	**[[3vr2]], [[~~7cop~~]], [[7coq]], [[8igv]], [[8igw]] - EhATPase subunits A,B<br />	+	**[[3vr2]], [[8igu]], [[7coq]], [[8igv]], [[8igw]] - EhATPase subunits A,B<br />
	**[[3vr4]], [[3vr5]] - EhATPase subunits A,B,D,G<br />		**[[3vr4]], [[3vr5]] - EhATPase subunits A,B,D,G<br />
	**[[3vr3]] - EhATPase subunits A,B + AMPPNP<br />		**[[3vr3]] - EhATPase subunits A,B + AMPPNP<br />

Joel L. Sussman at 12:07, 19 July 2023

Joel L. Sussman — Wed, 19 Jul 2023 12:07:30 GMT

←Older revision		Revision as of 12:07, 19 July 2023
Line 298:		Line 298:
	*''Na+ transporting ATPase''		*''Na+ transporting ATPase''

-	**[[2db4]], [[~~3aou~~]] - EhATPase subunit K <br />	+	**[[2db4]], [[8igu]] - EhATPase subunit K <br />
	**[[3aon]] - EhATPase subunits D,G<br />		**[[3aon]] - EhATPase subunits D,G<br />
-	**[[3vr2]], [[7cop]], [[7coq]], [[~~7cor~~]], [[~~7cos~~]] - EhATPase subunits A,B<br />	+	**[[3vr2]], [[7cop]], [[7coq]], [[8igv]], [[8igw]] - EhATPase subunits A,B<br />
	**[[3vr4]], [[3vr5]] - EhATPase subunits A,B,D,G<br />		**[[3vr4]], [[3vr5]] - EhATPase subunits A,B,D,G<br />
	**[[3vr3]] - EhATPase subunits A,B + AMPPNP<br />		**[[3vr3]] - EhATPase subunits A,B + AMPPNP<br />

Joel L. Sussman at 14:02, 26 October 2022

Joel L. Sussman — Wed, 26 Oct 2022 14:02:04 GMT

←Older revision		Revision as of 14:02, 26 October 2022
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	**[[1q3i]] - pATPase NBD<br />		**[[1q3i]] - pATPase NBD<br />
	**[[4ret]], [[4res]], [[4hyt]], [[4hqj]] - pATPase subunits α,β,γ<br />		**[[4ret]], [[4res]], [[4hyt]], [[4hqj]] - pATPase subunits α,β,γ<br />
-	**[[7d91]], [[7ddf]], [[~~7ddj~~]] - pATPase subunits A,B + ion transport regulator <br />	+	**[[7d91]], [[7ddf]], [[7wyt]] - pATPase subunits A,B + ion transport regulator <br />
	**[[7d92]], [[7d93]], [[7d94]], [[7wys]], [[7ddh]], [[7ddi]], [[7ddk]], [[7ddl]] - pATPase subunits A,B + ion transport regulator + inhibitor<br />		**[[7d92]], [[7d93]], [[7d94]], [[7wys]], [[7ddh]], [[7ddi]], [[7ddk]], [[7ddl]] - pATPase subunits A,B + ion transport regulator + inhibitor<br />
	**[[4xe5]] - bATPase <br />		**[[4xe5]] - bATPase <br />

Joel L. Sussman at 14:01, 26 October 2022

Joel L. Sussman — Wed, 26 Oct 2022 14:01:11 GMT

←Older revision		Revision as of 14:01, 26 October 2022
Line 202:		Line 202:
	**[[4ret]], [[4res]], [[4hyt]], [[4hqj]] - pATPase subunits α,β,γ<br />		**[[4ret]], [[4res]], [[4hyt]], [[4hqj]] - pATPase subunits α,β,γ<br />
	**[[7d91]], [[7ddf]], [[7ddj]] - pATPase subunits A,B + ion transport regulator <br />		**[[7d91]], [[7ddf]], [[7ddj]] - pATPase subunits A,B + ion transport regulator <br />
-	**[[7d92]], [[7d93]], [[7d94]], [[~~7ddg~~]], [[7ddh]], [[7ddi]], [[7ddk]], [[7ddl]] - pATPase subunits A,B + ion transport regulator + inhibitor<br />	+	**[[7d92]], [[7d93]], [[7d94]], [[7wys]], [[7ddh]], [[7ddi]], [[7ddk]], [[7ddl]] - pATPase subunits A,B + ion transport regulator + inhibitor<br />
	**[[4xe5]] - bATPase <br />		**[[4xe5]] - bATPase <br />
	**[[1mo8]], [[1mo7]] - rATPase α-1 <br />		**[[1mo8]], [[1mo7]] - rATPase α-1 <br />

Michal Harel at 07:05, 26 October 2022

Michal Harel — Wed, 26 Oct 2022 07:05:55 GMT

(Difference between revisions)

Michal Harel at 06:55, 26 October 2022

Michal Harel — Wed, 26 Oct 2022 06:55:14 GMT

(Difference between revisions)

Michal Harel at 09:17, 25 October 2022

Michal Harel — Tue, 25 Oct 2022 09:17:13 GMT

←Older revision		Revision as of 09:17, 25 October 2022
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	Updated on {{REVISIONDAY2}}-{{MONTHNAME\|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}		Updated on {{REVISIONDAY2}}-{{MONTHNAME\|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
	{{#tree:id=OrganizedByTopic\|openlevels=0\|		{{#tree:id=OrganizedByTopic\|openlevels=0\|
		+
		+	*'''ATPase hydrolysing ATP'''

	*'''F-ATPase'''		*'''F-ATPase'''
Line 501:		Line 503:

	**[[7nxf]], [[7ny1]] – NcATPase – Cryo EM<br />		**[[7nxf]], [[7ny1]] – NcATPase – Cryo EM<br />
		+
		+	*'''ATPase synthesizing ATP or ATP synthase'''
		+
		+	*V-ATPS subunit A
		+
		+	**[[3i4l]], [[7qss]], [[7qst]] - PhATPS subunit A – ''Pyrococcus horikoshii''<br />
		+	**[[3mfy]], [[3m4y]], [[3nd8]], [[3nd9]], [[3p20]], [[3qg1]], [[3qia]], [[3qjy]], [[3sdz]], [[3se0]], [[5x09]] - PhATPS subunit A (mutant)
		+	**[[3i72]], [[3i73]], [[3ikj]] - TtATPS subunit A (mutant) - ''Thermos thermophilus''<br />
		+	**[[4o1s]] - ATPS subunit A – ''Thermoplasma volcanium''<br />
		+	**[[5bn5]] – NeATPS + NEQ263 – ''Nanoarchaeum equitans'' <br />
		+	**[[5bn4]] – NeATPS + NEQ263 + ANP <br />
		+	**[[5bn3]] – NeATPS + NEQ263 + ADP <br />
		+	**[[5bo5]] – NeATPS subunit NeqB <br />
		+
		+	*V-ATPS subunit B
		+
		+	**[[2rkw]], [[3b2q]], [[3ssa]], [[3tgw]], [[3tiv]] - MmATPS subunit B (mutant) - ''Methanosarcina mazei''<br />
		+	**[[3dsr]] - MmATPS subunit B+ADP<br />
		+	**[[3eiu]] - MmATPS subunit B+ATP<br />
		+
		+	*V-ATPS subunit C
		+
		+	**[[3v3c]] – ATPS subunit C – pea<br />
		+	**[[4mjn]] - F1-ATPS - wheat<br />
		+	**[[2w5j]], [[6tqj]] – sF1-ATPS - spinach<BR />
		+	**[[3u2f]], [[3u2y]], [[3u32]], [[3ud0]] - yATPS subunit C – yeast<br />
		+	**[[1ijp]], [[1l6t]] – EcF1-ATPS subunit C (mutant) – ''Escherichia coli'' - NMR<br />
		+	**[[4utq]] – EcF1-ATPS membrane domain + insertase YIDC – Cryo EM<BR />
		+	**[[3lg8]] - MjATPS subunit C C-terminal - ''Methanocaldocoddus jannaschii''<br />
		+	**[[2wie]], [[2xqs]], [[2xqt]], [[2xqu]] - ATPS subunit C – ''Arthrospira platensis''<br />
		+	**[[3zk1]], [[3zk2]] - ATPS subunit C – ''Fusobacterium nucleatum''<br />
		+	**[[7wem]] – BaF1-ATPS subunit C – ''Bacillus'' - NMR<br />
		+	**[[4bem]] - F1F0-ATPS – ''Acetobacterium woodii''<br />
		+
		+	*V-ATPS subunit E
		+
		+	**[[2dm9]], [[2dma]] - PhATPS subunit E – ''Pyrococcus horikoshii''<br />
		+	**[[4dt0]] – PhATPS subunit E<br />
		+	**[[2kk7]] - MjATPS subunit E N-terminal – NMR<br />
		+
		+	*V-ATPS subunit F
		+
		+	**[[2ov6]] - MmATPS subunit F - NMR<br />
		+	**[[2d00]] - TtATPS subunit F- ''Thermus thermophilus''<br />
		+	**[[2qai]] - ATPS subunit F – ''Pyrococcus furiosus''<br />
		+	**[[2i4r]] - ATPS subunit F – ''Archaeoglobus fulgidus''<br />
		+
		+
		+	*F1F0 ATPS α subunit
		+
		+	**[[2r9v]] - F1-ATPS – ''Thermotoga maritima''<br />
		+
		+	*F1F0 ATPS β subunit
		+
		+	**[[1pyv]] - F1-ATPS – NMR – tobacco<br />
		+	**[[1b9u]] – EcF1-ATPS membrane domain – NMR<br />
		+	**[[1l2p]] – EcF1-ATPS dimerization domain<br />
		+	**[[2khk]] - EcF1-ATPS fragment – NMR<br />
		+	**[[4q4l]] - F1-ATPS – Burkholderia thailandensis<br />
		+
		+	*F1F0 ATPS γ subunit
		+
		+	**[[1wu0]] – BaATPS – NMR<br />
		+	**[[1a91]], [[1c0v]], [[1aty]], [[1c99]] – EcF1-ATPS – NMR<br />
		+	**[[2wgm]] – F0-ATPS – Ilyobacter tartaricus<br />
		+	**[[4v1g]] – MpF0F1-ATPS – ''Mycobacterium phlei''<br />
		+	**[[4v1f]], [[4v1h]] – MpF0-ATPS + drug<br />
		+	**[[2x2v]], [[4cbk]], [[4cbj]] – BpF0-ATPS – ''Bacillus pseudofirmus''<br />
		+	**[[3zo6]] – BpF0-ATPS (mutant)<br />
		+
		+	*F1F0 ATPS δ subunit
		+
		+	**[[1abv]] – EcF1-ATPS N terminal – NMR<br />
		+
		+	*F1F0 ATPS ε subunit
		+
		+	**[[1aqt]] – EcF1-ATPS (mutant) <br />
		+	**[[1bsh]], [[1bsn]] – EcF1-ATPS – NMR<br />
		+	**[[2e5t]], [[2e5u]] – BaF1-ATPS C terminal – NMR<br />
		+	**[[2e5y]] – BaF1-ATPS<br />
		+	**[[6pi4]] – MsF1-ATPS – ''Mycobacterium smegmatis''<BR />
		+	**[[7vil]] – F1-ATPS – ''Mycobacterium abscessus'' - NMR<BR />
		+	**[[5yio]] – MtF1-ATPS+GDP – ''Mycobacterium tuberculosis'' - NMR<br />
		+
		+	*F1F0 ATPS α,γ subunits
		+
		+	**[[1c17]] – EcF1-ATPS – NMR<br />
		+
		+	*F1F0 ATPS β,δ subunits
		+
		+	**[[2cly]] – bF1-ATPS + ATPS coupling factor – bovine<br />
		+
		+	*F1F0 ATPS γ,ε subunits
		+
		+	**[[1fs0]] – EcF1-ATPS<br />
		+
		+	*F1F0 ATPS α,β,γ,δ subunits
		+
		+	**[[1qo1]]- yF1-ATPS + protein 9<br />
		+
		+	*ATPS multi subunits
		+
		+	**[[5fil]], [[5fik]], [[5fij]], [[5ari]], [[5arh]], [[5are]], [[5ara]], [[6xbw]], [[6xby]], [[6zbb]], [[6zg7]], [[6zg8]], [[6zik]], [[6ziq]], [[6zit]], [[6ziu]], [[6zpo]], [[6zqm]], [[6zqn]], [[7ajb]], [[7ajc]], [[7ajd]], [[7aje]], [[7ajf]], [[7ajg]], [[7ajh]], [[7aji]], [[7ajj]] – bATPS – Cryo EM <br />
		+	**[[4asu]], [[2jdi]], [[2jj1]], [[2jj2]] - bF1-ATPS<br />
		+	**[[2v7q]], [[1e79]], [[2ck3]], [[2zia]] - bF1-ATPS+inhibitor<br />
		+	**[[6yy0]], [[6z1r]], [[6z1u]] - bF1-ATPS+ inhibitor + coupling factor + ADP + ATP – Cryo EM<br />
		+	**[[2xnd]], [[2xok]] - bF1-ATPS+ATPS lipid-binding protein<br />
		+	**[[6j54]], [[6j5a]], [[6j5i]], [[6j5j]], [[6j5k]], [[6zna]], [[6zmr]] – pATPS – pig - Cryo EM<br />
		+	**[[6j5k]] – pATPS + ADP + ATP - Cryo EM<br />
		+	**[[6za9]] – oATPS – ovine - Cryo EM<br />
		+	**[[6tt7]] – oATPS + ADP - Cryo EM<br />
		+	**[[6vm1]], [[6vm4]], [[6vmg]] – sATPS - Cryo EM<br />
		+	**[[6fkf]], [[6fkh]], [[6fki]], [[6vmb]], [[6vmd]], [[6vof]], [[6vog]], [[6voh]], [[6voi]], [[6voj]], [[6vok]], [[6vol]], [[6vom]], [[6von]], [[6voo]] – sATPS + ADP + ATP - Cryo EM<br />
		+	**[[4b2q]], [[6b2z]], [[6b8h]], [[6cp6]], [[6cp7]],[[6wtd]], [[7tjy]], [[7tjz]], [[7tk0]], [[7tk1]], [[7tk2]], [[7tk3]], [[7tk4]], [[7tk5]], [[7tk6]], [[7tk7]], [[7tk8]], [[7tk9]], [[7tka]], [[7tkb]], [[7tkc]], [[7tkd]], [[7tke]], [[7tkf]], [[7tkg]], [[7tkh]], [[7tki]], [[7tkj]], [[7tkk]], [[7tkl]], [[7tkm]], [[7tkn]], [[7tko]], [[7tkp]], [[7tkq]], [[7tkr]], [[7tks]] – yATPS – Cryo EM<br />
		+	**[[3fks]], [[3zry]], [[2hld]] - yF1-ATPS<br />
		+	**[[3oe7]], [[3oee]], [[3oeh]],[[3ofn]] - yF1-ATPS (mutant)<br />
		+	**[[7tjs]] – yATPS + ADP + ATP - Cryo EM<br />
		+	**[[6cp3]] – yATPS + oligomycin<br />
		+	**[[6cp5]] – yATPS + oligomycin inhibitor – Cryo EM<br />
		+	**[[2wpd]] – yATPS + ADP + ATP <br />
		+	**[[7md3]] – yATPS + ATP + drug – Cryo EM <br />
		+	**[[2wpd]], [[2wss]] - yF1-ATPS+subunit 9+Mg+ADP+ATP<br />
		+	**[[6tdu]], [[6tdv]], [[6tdw]], [[6tdx]], [[6tdy]], [[6tdz]], [[6te0]] – ATPS + ADP + ATP – ''Euglena gracilis'' – Cryo EM<br />
		+	**[[5fl7]] – ATPS + ADP + ATP – ''Yarrowiya lipolytica'' <br />
		+	**[[7jg5]], [[7jg6]], [[7jg7]], [[7jgb]], [[7jgc]], [[7nk7]], [[7nk9]], [[7nkb]], [[7nkd]], [[7nkh]], [[7nkj]], [[7nkk]], [[7nkl]], [[7nkn]], [[7nkp]], [[7nkq]], [[7nl9]] – MsATPS – Cryo EM<br />
		+	**[[7jg8]], [[7jg9]], [[7jga]] – MsATPS + drug – Cryo EM<br />
		+	**[[7njk]], [[7njl]], [[7njm]], [[7njn]], [[7njo]], [[7njp]], [[7njq]], [[7njr]], [[7njs]], [[7njt]], [[7nju]], [[7njv]], [[7njw]], [[7njx]], [[7njy]] – MsATPS + ADP + ATP – Cryo EM<br />
		+	**[[6f36]], [[6rd4]], [[6rd5]], [[6rd6]], [[6rd7]], [[6rd8]], [[6rd9]], [[6rda]], [[6rdb]], [[6rdc]], [[6rdd]], [[6rde]], [[6rdf]], [[6rdg]], [[6rdi]], [[6rdj]], [[6rdk]], [[6rdl]], [[6rdm]], [[6rdn]], [[6rdp]], [[6rdq]], [[6rds]], [[6rdt]], [[6rdu]], [[6rdv]], [[6rdx]], [[6rdy]], [[6rdz]], [[6re0]], [[6re1]], [[6re2]], [[6re3]], [[6re4]], [[6re5]], [[6re6]], [[6re7]], [[6re8]], [[6re9]], [[6rea]], [[6reb]], [[6rec]], [[6red]], [[6ree]], [[6ref]], [[6rer]], [[6res]], [[6ret]], [[6reu]] – ATPS – ''Polytomella'' - Cryo EM<br />
		+	**[[5lqz]], [[5lqy]], [[5lqx]] – ATPS + ATPase inhibitor protein – ''Ogataea angusta'' - Cryo EM<br />
		+	**[[5dn6]] – PdATPS + zeta inhibitor protein - ''Paracoccus denitrificans''<br />
		+	**[[5t4o]], [[5t4p]], [[5t4q]], [[6oqr]], [[6oqs]], [[6oqt]], [[6oqu]], [[6oqv]], [[6oqw]], [[6pqv]], [[6vwk]], [[6wnq]], [[6wnr]] – EcATPS – Cryo EM<br />
		+	**[[7md2]], [[7tjt]], [[7tju]], [[7tjv]], [[7tjw]], [[7tjx]] – EcATPS + ATP – Cryo EM<br />
		+	**[[3oaa]] – EcATPS (mutant) + ADP + ANP <br />
		+	**[[7xko]], [[7xkp]] – BaATPS – Cryo EM<br />
		+	**[[6n2d]], [[6n2y]], [[6n2z]], [[6n30]] – BaATPS + ADP + ATP – Cryo EM<br />
		+	**[[7p2y]], [[7p3n]], [[7p3w]] – ATPS + ADP + ATP – ''Acinetobacter baumannii'' – Cryo EM<br />
		+	**[[6tmg]], [[6tmh]], [[6tmi]], [[6tmj]], [[6tmk]], [[6tml]] – ATPS + ATPase inhibitor protein + OSCP + ADP + ATP – ''Toxoplasma gondii'' - Cryo EM<br />
		+	**[[6ynv]], [[6ynw]], [[6ynx]], [[6yny]], [[6ynz]], [[6yo0]] – ATPS + ADP + ATP – ''Tetrahymena thermophila'' - Cryo EM<br />

	}}		}}
	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel at 08:42, 23 October 2022

Michal Harel — Sun, 23 Oct 2022 08:42:05 GMT

(Difference between revisions)

Joel L. Sussman at 03:41, 30 May 2022

Joel L. Sussman — Mon, 30 May 2022 03:41:59 GMT

←Older revision		Revision as of 03:41, 30 May 2022
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	**[[1q3i]] - pATPase NBD<br />		**[[1q3i]] - pATPase NBD<br />
	**[[4ret]], [[4res]], [[4hyt]], [[4hqj]] - pATPase subunits α,β,γ<br />		**[[4ret]], [[4res]], [[4hyt]], [[4hqj]] - pATPase subunits α,β,γ<br />
-	**[[7d91]], [[7ddf]], [[~~7ddj~~]] - pATPase subunits A,B + ion transport regulator <br />	+	**[[7d91]], [[7ddf]], [[7wyt]] - pATPase subunits A,B + ion transport regulator <br />
-	**[[7d92]], [[7d93]], [[7d94]], [[~~7evx~~]], [[7ddh]], [[7ddi]], [[7ddk]], [[7ddl]] - pATPase subunits A,B + ion transport regulator + inhibitor<br />	+	**[[7d92]], [[7d93]], [[7d94]], [[7wys]], [[7ddh]], [[7ddi]], [[7ddk]], [[7ddl]] - pATPase subunits A,B + ion transport regulator + inhibitor<br />
	**[[4xe5]] - bATPase <br />		**[[4xe5]] - bATPase <br />
	**[[1mo8]], [[1mo7]] - rATPase α-1 <br />		**[[1mo8]], [[1mo7]] - rATPase α-1 <br />

Joel L. Sussman at 18:06, 8 July 2021

Joel L. Sussman — Thu, 08 Jul 2021 18:06:43 GMT

←Older revision		Revision as of 18:06, 8 July 2021
Line 279:		Line 279:
	**[[4ret]], [[4res]], [[4hyt]], [[4hqj]] - pATPase subunits α,β,γ<br />		**[[4ret]], [[4res]], [[4hyt]], [[4hqj]] - pATPase subunits α,β,γ<br />
	**[[7d91]], [[7ddf]], [[7ddj]] - pATPase subunits A,B + ion transport regulator <br />		**[[7d91]], [[7ddf]], [[7ddj]] - pATPase subunits A,B + ion transport regulator <br />
-	**[[7d92]], [[7d93]], [[7d94]], [[~~7ddg~~]], [[7ddh]], [[7ddi]], [[7ddk]], [[7ddl]] - pATPase subunits A,B + ion transport regulator + inhibitor<br />	+	**[[7d92]], [[7d93]], [[7d94]], [[7evx]], [[7ddh]], [[7ddi]], [[7ddk]], [[7ddl]] - pATPase subunits A,B + ion transport regulator + inhibitor<br />
	**[[4xe5]] - bATPase <br />		**[[4xe5]] - bATPase <br />
	**[[1mo8]], [[1mo7]] - rATPase α-1 <br />		**[[1mo8]], [[1mo7]] - rATPase α-1 <br />