Alignment of 1rpu vs 1r9f - Revision history

Wayne Decatur at 02:43, 16 May 2010

Wayne Decatur — Sun, 16 May 2010 02:43:49 GMT

←Older revision		Revision as of 02:43, 16 May 2010
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	<small><b><font face = 'courier'>		<small><b><font face = 'courier'>
	1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75<br>		1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75<br>
-	+TSPFKLPDESPSWTEWRL+NDE;   NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG<br>	+	+TSPFKLPDESPSWTEWRL+NDE   NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG<br>
	1r9f 2  MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61<br>		1r9f 2  MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61<br>

Wayne Decatur at 02:43, 16 May 2010

Wayne Decatur — Sun, 16 May 2010 02:43:14 GMT

←Older revision		Revision as of 02:43, 16 May 2010
Line 15:		Line 15:
	<small><b><font face = 'courier'>		<small><b><font face = 'courier'>
	1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75<br>		1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75<br>
-	+TSPFKLPDESPSWTEWRL+NDE NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG<br>	+	+TSPFKLPDESPSWTEWRL+NDE;   NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG<br>
	1r9f 2  MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61<br>		1r9f 2  MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61<br>

Wayne Decatur at 02:41, 16 May 2010

Wayne Decatur — Sun, 16 May 2010 02:41:49 GMT

←Older revision		Revision as of 02:41, 16 May 2010
Line 1:		Line 1:
		+	[[1rpu]] = Carnation italian ringspot virus p19<br>
		+	[[1r9f]] = Tomato bushy stunt virus p19
		+
	Sequences in structures obtained from PDBsum and aligned.<br>		Sequences in structures obtained from PDBsum and aligned.<br>
	Alignment from: [http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on&BLAST_SPEC=blast2seq&LINK_LOC=blasttab&LAST_PAGE=blastn&BLAST_INIT=blast2seq&QUERY=%3E1rpu%3AA%0ANDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDENPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV&SUBJECTS=%3E1r9f%3AA%0AHMTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMA protein-protein BLAST]<br>		Alignment from: [http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on&BLAST_SPEC=blast2seq&LINK_LOC=blasttab&LAST_PAGE=blastn&BLAST_INIT=blast2seq&QUERY=%3E1rpu%3AA%0ANDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDENPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV&SUBJECTS=%3E1r9f%3AA%0AHMTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMA protein-protein BLAST]<br>
Line 19:		Line 22:
	1r9f 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120<br>		1r9f 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120<br>
	</font></b></small><br>		</font></b></small><br>
-
-	[[1rpu]] = Carnation italian ringspot virus p19<br>
-	[[1r9f]] = Tomato bushy stunt virus p19

Wayne Decatur: added what 1rpu and 1r9f were

Wayne Decatur — Sun, 16 May 2010 02:40:54 GMT

added what 1rpu and 1r9f were

←Older revision		Revision as of 02:40, 16 May 2010
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	1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134<br>		1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134<br>
	SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+<br>		SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+<br>
-	~~1rpf~~ 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120<br>	+	1r9f 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120<br>
	</font></b></small><br>		</font></b></small><br>
		+
		+	[[1rpu]] = Carnation italian ringspot virus p19<br>
		+	[[1r9f]] = Tomato bushy stunt virus p19

Wayne Decatur at 02:14, 16 May 2010

Wayne Decatur — Sun, 16 May 2010 02:14:55 GMT

←Older revision		Revision as of 02:14, 16 May 2010
Line 1:		Line 1:
-	~~From~~: [http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on&BLAST_SPEC=blast2seq&LINK_LOC=blasttab&LAST_PAGE=blastn&BLAST_INIT=blast2seq&QUERY=%3E1rpu%3AA%0ANDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDENPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV&SUBJECTS=%3E1r9f%3AA%0AHMTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMA protein-protein BLAST]<br>	+	Sequences in structures obtained from PDBsum and aligned.<br>
		+	Alignment from: [http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on&BLAST_SPEC=blast2seq&LINK_LOC=blasttab&LAST_PAGE=blastn&BLAST_INIT=blast2seq&QUERY=%3E1rpu%3AA%0ANDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDENPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV&SUBJECTS=%3E1r9f%3AA%0AHMTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMA protein-protein BLAST]<br>
	Length=121<br>		Length=121<br>
	Score = 226 bits (576)		Score = 226 bits (576)

Wayne Decatur at 02:13, 16 May 2010

Wayne Decatur — Sun, 16 May 2010 02:13:07 GMT

←Older revision		Revision as of 02:13, 16 May 2010
Line 1:		Line 1:
-	<~~nowiki~~>	+	From: [http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastp&BLAST_PROGRAMS=blastp&PAGE_TYPE=BlastSearch&SHOW_DEFAULTS=on&BLAST_SPEC=blast2seq&LINK_LOC=blasttab&LAST_PAGE=blastn&BLAST_INIT=blast2seq&QUERY=%3E1rpu%3AA%0ANDTREQANGERWDGGSGGITSPFKLPDESPSWTEWRLYNDENPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQLTPVEV&SUBJECTS=%3E1r9f%3AA%0AHMTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLGSWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQMA protein-protein BLAST]<br>
-	>~~lcl\|50431 1r9f~~:A	+	Length=121<br>
-	~~Length~~=~~121~~	+	Score = 226 bits (576)
		+	Expect = 1e-64
		+	Method: Compositional matrix adjust.<br>
		+	Identities = 106/119 (89%)
		+	Positives = 114/119 (95%)
		+	Gaps = 3/119 (2%)

-	Score = 226 bits (576), Expect = 1e-64, Method: Compositional matrix adjust.
-	Identities = 106/119 (89%), Positives = 114/119 (95%), Gaps = 3/119 (2%)
-	</nowiki>

	<small><b><font face = 'courier'>		<small><b><font face = 'courier'>

Wayne Decatur at 02:06, 16 May 2010

Wayne Decatur — Sun, 16 May 2010 02:06:07 GMT

←Older revision		Revision as of 02:06, 16 May 2010
Line 1:		Line 1:
-	<~~code~~>	+	<nowiki>
-	1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75	+	>lcl\|50431 1r9f:A
-	<~~/code>~~	+	Length=121
-	~~<code~~>	+
-	+TSPFKLPDESPSWTEWRL+NDE NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG	+	Score = 226 bits (576), Expect = 1e-64, Method: Compositional matrix adjust.
-	~~</code>~~	+	Identities = 106/119 (89%), Positives = 114/119 (95%), Gaps = 3/119 (2%)
-	<~~code~~>	+	</nowiki>
-	1r9f 2 MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61	+
-	<~~/code~~>	+	<small><b><font face = 'courier'>
-	~~<code>~~	+	1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75<br>
-	1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134	+	+TSPFKLPDESPSWTEWRL+NDE NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG<br>
-	<~~/code~~>	+	1r9f 2  MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61<br>
-	~~<code>~~	+
-	SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+	+	1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134<br>
-	<~~/code>~~	+	SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+<br>
-	~~<code~~>	+	1rpf 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120<br>
-	1rpf 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120	+	</font></b></small><br>
-	</~~code~~>	+

Wayne Decatur at 02:00, 16 May 2010

Wayne Decatur — Sun, 16 May 2010 02:00:42 GMT

←Older revision		Revision as of 02:00, 16 May 2010
Line 1:		Line 1:
-	<nowiki>
-	lcl\|50431 1r9f:A
-	Length=121
-
-	Score = 226 bits (576), Expect = 1e-64, Method: Compositional matrix adjust.
-	Identities = 106/119 (89%), Positives = 114/119 (95%), Gaps = 3/119 (2%)
-	</nowiki>
	<code>		<code>
	1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75		1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75
		+	</code>
		+	<code>
	+TSPFKLPDESPSWTEWRL+NDE NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG		+TSPFKLPDESPSWTEWRL+NDE NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG
		+	</code>
		+	<code>
	1r9f 2 MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61		1r9f 2 MTSPFKLPDESPSWTEWRLHNDETQDNPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 61
-		+	</code>
		+	<code>
	1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134		1rpu 76 SWTGDSVNYAASRFLGANQVGCTYSIRFRGVSVTISGGSRTLQHLCEMAIRSKQELLQL 134
		+	</code>
		+	<code>
	SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+		SWTGDSVNYAASRF G +Q+GCTYSIRFRGVS+T+SGGSRTLQHLCEMAIRSKQE+LQ+
		+	</code>
		+	<code>
	1rpf 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120		1rpf 62 SWTGDSVNYAASRFFGFDQIGCTYSIRFRGVSITVSGGSRTLQHLCEMAIRSKQEMLQM 120
-
	</code>		</code>

Wayne Decatur at 01:57, 16 May 2010

Wayne Decatur — Sun, 16 May 2010 01:57:15 GMT

←Older revision		Revision as of 01:57, 16 May 2010
Line 1:		Line 1:
-		+	<nowiki>
	lcl\|50431 1r9f:A		lcl\|50431 1r9f:A
	Length=121		Length=121
Line 5:		Line 5:
	Score = 226 bits (576), Expect = 1e-64, Method: Compositional matrix adjust.		Score = 226 bits (576), Expect = 1e-64, Method: Compositional matrix adjust.
	Identities = 106/119 (89%), Positives = 114/119 (95%), Gaps = 3/119 (2%)		Identities = 106/119 (89%), Positives = 114/119 (95%), Gaps = 3/119 (2%)
		+	</nowiki>
	<code>		<code>
	1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75		1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75

Wayne Decatur at 01:56, 16 May 2010

Wayne Decatur — Sun, 16 May 2010 01:56:34 GMT

←Older revision		Revision as of 01:56, 16 May 2010
Line 1:		Line 1:
-	~~<code>~~	+
	lcl\|50431 1r9f:A		lcl\|50431 1r9f:A
	Length=121		Length=121
Line 5:		Line 5:
	Score = 226 bits (576), Expect = 1e-64, Method: Compositional matrix adjust.		Score = 226 bits (576), Expect = 1e-64, Method: Compositional matrix adjust.
	Identities = 106/119 (89%), Positives = 114/119 (95%), Gaps = 3/119 (2%)		Identities = 106/119 (89%), Positives = 114/119 (95%), Gaps = 3/119 (2%)
-		+	<code>
	1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75		1rpu 19 ITSPFKLPDESPSWTEWRLYNDE---NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG 75
	+TSPFKLPDESPSWTEWRL+NDE NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG		+TSPFKLPDESPSWTEWRL+NDE NPLGFKESWGFGKVVFKRYLRYDRTEASLHRVLG