ConSurf/Index - Revision history

Eric Martz: /* Practical */

Eric Martz — Fri, 07 Jan 2022 23:54:19 GMT

Practical

←Older revision		Revision as of 23:54, 7 January 2022
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	* [[FirstGlance/Visualizing Conservation]] [[Image:New yellow1.gif]] January, 2022. Demonstrates the conveniences offered by FirstGlance for easily seeing conservation of [[salt bridges]], [[cation-pi interactions]], residues that bind ligand, substrate, or inhibitor, residues in covalent protein crosslinks, or any residues that you specify.		* [[FirstGlance/Visualizing Conservation]] [[Image:New yellow1.gif]] January, 2022. Demonstrates the conveniences offered by FirstGlance for easily seeing conservation of [[salt bridges]], [[cation-pi interactions]], residues that bind ligand, substrate, or inhibitor, residues in covalent protein crosslinks, or any residues that you specify.

-	* [[Interpreting ConSurf Results]] [[Image:New yellow1.gif]] January, 2022.	+	* [[Interpreting ConSurf Results]] [[Image:New yellow1.gif]] January, 2022. How to tell whether a ConSurf result is optimal.

	* [[Help:How to Insert a ConSurf Result Into a Proteopedia Green Link]]		* [[Help:How to Insert a ConSurf Result Into a Proteopedia Green Link]]

Eric Martz: /* Practical */

Eric Martz — Fri, 07 Jan 2022 23:53:27 GMT

Practical

←Older revision		Revision as of 23:53, 7 January 2022
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	* [[FirstGlance/Visualizing Conservation]] [[Image:New yellow1.gif]] January, 2022. Demonstrates the conveniences offered by FirstGlance for easily seeing conservation of [[salt bridges]], [[cation-pi interactions]], residues that bind ligand, substrate, or inhibitor, residues in covalent protein crosslinks, or any residues that you specify.		* [[FirstGlance/Visualizing Conservation]] [[Image:New yellow1.gif]] January, 2022. Demonstrates the conveniences offered by FirstGlance for easily seeing conservation of [[salt bridges]], [[cation-pi interactions]], residues that bind ligand, substrate, or inhibitor, residues in covalent protein crosslinks, or any residues that you specify.
		+
	* [[Interpreting ConSurf Results]] [[Image:New yellow1.gif]] January, 2022.		* [[Interpreting ConSurf Results]] [[Image:New yellow1.gif]] January, 2022.

Eric Martz: /* Practical */

Eric Martz — Fri, 07 Jan 2022 23:53:15 GMT

Practical

←Older revision		Revision as of 23:53, 7 January 2022
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	* [[ConSurf Quick Analysis Procedure]]: step by step for submitting a job to ConSurf.		* [[ConSurf Quick Analysis Procedure]]: step by step for submitting a job to ConSurf.
	* [[ConSurfDB vs. ConSurf]] explains how each server works, and how to get the best results from each.		* [[ConSurfDB vs. ConSurf]] explains how each server works, and how to get the best results from each.
		+
		+
	* [[FirstGlance/Visualizing Conservation]] [[Image:New yellow1.gif]] January, 2022. Demonstrates the conveniences offered by FirstGlance for easily seeing conservation of [[salt bridges]], [[cation-pi interactions]], residues that bind ligand, substrate, or inhibitor, residues in covalent protein crosslinks, or any residues that you specify.		* [[FirstGlance/Visualizing Conservation]] [[Image:New yellow1.gif]] January, 2022. Demonstrates the conveniences offered by FirstGlance for easily seeing conservation of [[salt bridges]], [[cation-pi interactions]], residues that bind ligand, substrate, or inhibitor, residues in covalent protein crosslinks, or any residues that you specify.
	* [[Interpreting ConSurf Results]] [[Image:New yellow1.gif]] January, 2022.		* [[Interpreting ConSurf Results]] [[Image:New yellow1.gif]] January, 2022.
		+
	* [[Help:How to Insert a ConSurf Result Into a Proteopedia Green Link]]		* [[Help:How to Insert a ConSurf Result Into a Proteopedia Green Link]]

	==See Also==		==See Also==
	*[[Index pages]]		*[[Index pages]]

Eric Martz: /* Practical */

Eric Martz — Fri, 07 Jan 2022 23:52:33 GMT

Practical

←Older revision		Revision as of 23:52, 7 January 2022
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	* [[ConSurf Quick Analysis Procedure]]: step by step for submitting a job to ConSurf.		* [[ConSurf Quick Analysis Procedure]]: step by step for submitting a job to ConSurf.
	* [[ConSurfDB vs. ConSurf]] explains how each server works, and how to get the best results from each.		* [[ConSurfDB vs. ConSurf]] explains how each server works, and how to get the best results from each.
-	* [[FirstGlance/Visualizing Conservation]] [[Image:New yellow1.gif]] January, 2022.	+	* [[FirstGlance/Visualizing Conservation]] [[Image:New yellow1.gif]] January, 2022. Demonstrates the conveniences offered by FirstGlance for easily seeing conservation of [[salt bridges]], [[cation-pi interactions]], residues that bind ligand, substrate, or inhibitor, residues in covalent protein crosslinks, or any residues that you specify.
	* [[Interpreting ConSurf Results]] [[Image:New yellow1.gif]] January, 2022.		* [[Interpreting ConSurf Results]] [[Image:New yellow1.gif]] January, 2022.
	* [[Help:How to Insert a ConSurf Result Into a Proteopedia Green Link]]		* [[Help:How to Insert a ConSurf Result Into a Proteopedia Green Link]]

Eric Martz at 23:49, 7 January 2022

Eric Martz — Fri, 07 Jan 2022 23:49:41 GMT

←Older revision		Revision as of 23:49, 7 January 2022
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	For some quick examples, see [[Introduction to Evolutionary Conservation]].		For some quick examples, see [[Introduction to Evolutionary Conservation]].

-	~~Here~~ are listed pages in Proteopedia about evolutionary conservation, how to use the [http://consurf.tau.ac.il ConSurf Server], and how to interpret its results to identify functional sites in proteins.	+	Below are listed pages in Proteopedia about evolutionary conservation, how to use the [http://consurf.tau.ac.il ConSurf Server], and how to interpret its results to identify functional sites in proteins.
	==Principles==		==Principles==
	* [[Introduction to Evolutionary Conservation]]: an explanation starting at the beginning, with examples.		* [[Introduction to Evolutionary Conservation]]: an explanation starting at the beginning, with examples.

Eric Martz at 23:49, 7 January 2022

Eric Martz — Fri, 07 Jan 2022 23:49:29 GMT

←Older revision		Revision as of 23:49, 7 January 2022
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	The [http://consurf.tau.ac.il ConSurf Server], a project led by Nir Ben-Tal and Tal Pupko (Tel-Aviv University, Israel), colors each amino acid in a protein structure by its level of evolutionary conservation. Functional sites are marked by clusters of '''con'''served '''surf'''ace residues. Available since 2002 and constantly upgraded, all methods are documented and its algorithms are published in peer-reviewed journals. When the confidence interval around a conservation grade is too wide, ConSurf assigns that residue a yellow color for "insufficient data".		The [http://consurf.tau.ac.il ConSurf Server], a project led by Nir Ben-Tal and Tal Pupko (Tel-Aviv University, Israel), colors each amino acid in a protein structure by its level of evolutionary conservation. Functional sites are marked by clusters of '''con'''served '''surf'''ace residues. Available since 2002 and constantly upgraded, all methods are documented and its algorithms are published in peer-reviewed journals. When the confidence interval around a conservation grade is too wide, ConSurf assigns that residue a yellow color for "insufficient data".
		+
		+	For some quick examples, see [[Introduction to Evolutionary Conservation]].

	Here are listed pages in Proteopedia about evolutionary conservation, how to use the [http://consurf.tau.ac.il ConSurf Server], and how to interpret its results to identify functional sites in proteins.		Here are listed pages in Proteopedia about evolutionary conservation, how to use the [http://consurf.tau.ac.il ConSurf Server], and how to interpret its results to identify functional sites in proteins.

Eric Martz at 22:34, 7 January 2022

Eric Martz — Fri, 07 Jan 2022 22:34:36 GMT

←Older revision		Revision as of 22:34, 7 January 2022
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-	The [http://consurf.tau.ac.il ConSurf Server], a project led by Nir Ben-Tal and Tal Pupko (Tel-Aviv University, Israel), colors each amino acid in a protein structure by its level of evolutionary conservation. Available since 2002 and constantly upgraded, all methods are documented and its algorithms are published in peer-reviewed journals. When the confidence interval around a conservation grade is too wide, ConSurf assigns that residue a yellow color for "insufficient data".	+	The [http://consurf.tau.ac.il ConSurf Server], a project led by Nir Ben-Tal and Tal Pupko (Tel-Aviv University, Israel), colors each amino acid in a protein structure by its level of evolutionary conservation. Functional sites are marked by clusters of '''con'''served '''surf'''ace residues. Available since 2002 and constantly upgraded, all methods are documented and its algorithms are published in peer-reviewed journals. When the confidence interval around a conservation grade is too wide, ConSurf assigns that residue a yellow color for "insufficient data".

	Here are listed pages in Proteopedia about evolutionary conservation, how to use the [http://consurf.tau.ac.il ConSurf Server], and how to interpret its results to identify functional sites in proteins.		Here are listed pages in Proteopedia about evolutionary conservation, how to use the [http://consurf.tau.ac.il ConSurf Server], and how to interpret its results to identify functional sites in proteins.

Eric Martz at 22:33, 7 January 2022

Eric Martz — Fri, 07 Jan 2022 22:33:43 GMT

←Older revision		Revision as of 22:33, 7 January 2022
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-	The [[http://consurf.tau.ac.il ConSurf Server]], a project led by Nir Ben-Tal and Tal Pupko (Tel-Aviv University, Israel), colors each amino acid in a protein structure by its level of evolutionary conservation. Available since 2002 and constantly upgraded, all methods are documented and its algorithms are published in peer-reviewed journals. When the confidence interval around a conservation grade is too wide, ConSurf assigns that residue a yellow color for "insufficient data".	+	The [http://consurf.tau.ac.il ConSurf Server], a project led by Nir Ben-Tal and Tal Pupko (Tel-Aviv University, Israel), colors each amino acid in a protein structure by its level of evolutionary conservation. Available since 2002 and constantly upgraded, all methods are documented and its algorithms are published in peer-reviewed journals. When the confidence interval around a conservation grade is too wide, ConSurf assigns that residue a yellow color for "insufficient data".

	Here are listed pages in Proteopedia about evolutionary conservation, how to use the [http://consurf.tau.ac.il ConSurf Server], and how to interpret its results to identify functional sites in proteins.		Here are listed pages in Proteopedia about evolutionary conservation, how to use the [http://consurf.tau.ac.il ConSurf Server], and how to interpret its results to identify functional sites in proteins.

Eric Martz at 22:33, 7 January 2022

Eric Martz — Fri, 07 Jan 2022 22:33:30 GMT

←Older revision		Revision as of 22:33, 7 January 2022
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		+	The [[http://consurf.tau.ac.il ConSurf Server]], a project led by Nir Ben-Tal and Tal Pupko (Tel-Aviv University, Israel), colors each amino acid in a protein structure by its level of evolutionary conservation. Available since 2002 and constantly upgraded, all methods are documented and its algorithms are published in peer-reviewed journals. When the confidence interval around a conservation grade is too wide, ConSurf assigns that residue a yellow color for "insufficient data".
		+
	Here are listed pages in Proteopedia about evolutionary conservation, how to use the [http://consurf.tau.ac.il ConSurf Server], and how to interpret its results to identify functional sites in proteins.		Here are listed pages in Proteopedia about evolutionary conservation, how to use the [http://consurf.tau.ac.il ConSurf Server], and how to interpret its results to identify functional sites in proteins.
	==Principles==		==Principles==

Eric Martz: /* Practical */

Eric Martz — Tue, 04 Jan 2022 19:39:03 GMT

Practical

←Older revision		Revision as of 19:39, 4 January 2022
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	* [[ConSurf Quick Analysis Procedure]]: step by step for submitting a job to ConSurf.		* [[ConSurf Quick Analysis Procedure]]: step by step for submitting a job to ConSurf.
	* [[ConSurfDB vs. ConSurf]] explains how each server works, and how to get the best results from each.		* [[ConSurfDB vs. ConSurf]] explains how each server works, and how to get the best results from each.
-	* [[FirstGlance/Visualizing Conservation]] [[Image:New yellow1.gif]]	+	* [[FirstGlance/Visualizing Conservation]] [[Image:New yellow1.gif]] January, 2022.
-	* [[Interpreting ConSurf Results]] [[Image:New yellow1.gif]]	+	* [[Interpreting ConSurf Results]] [[Image:New yellow1.gif]] January, 2022.
	* [[Help:How to Insert a ConSurf Result Into a Proteopedia Green Link]]		* [[Help:How to Insert a ConSurf Result Into a Proteopedia Green Link]]

	==See Also==		==See Also==
	*[[Index pages]]		*[[Index pages]]