Dihedral/Index - Revision history

Eric Martz at 23:08, 14 July 2018

Eric Martz — Sat, 14 Jul 2018 23:08:25 GMT

←Older revision		Revision as of 23:08, 14 July 2018
Line 4:		Line 4:

	<table cellpadding=5 border=1 style="border-collapse:collapse;"><tr><td>		<table cellpadding=5 border=1 style="border-collapse:collapse;"><tr><td>
-	<!--[[Image:Ramachandran plot general 100K.jpg\|right\|200px]]-->
	[[Image:Phipsi-AH.gif\|right]]		[[Image:Phipsi-AH.gif\|right]]

Line 40:		Line 39:
	</td></tr><tr><td>		</td></tr><tr><td>

-	<table align="right"><tr><td>	+	<table align="right"><tr><td style="background:white;">
-	[[Image:Dihedral-angles-anim.gif]][[Image:Rama-youtube-EM.gif\|right]]	+	[[Image:Dihedral-angles-anim.gif]][[Image:Rama-youtube-EM.gif]][[Image:Ramachandran plot general 100K.jpg\|right\|250px]]
		+
	</td></tr></table>		</td></tr></table>
	* '''[[Tutorial:Ramachandran_principle_and_phi_psi_angles\|The Ramachandran Principle, Phi (φ) and Psi (ψ) Angles in Proteins]]'''		* '''[[Tutorial:Ramachandran_principle_and_phi_psi_angles\|The Ramachandran Principle, Phi (φ) and Psi (ψ) Angles in Proteins]]'''

Eric Martz at 23:00, 14 July 2018

Eric Martz — Sat, 14 Jul 2018 23:00:28 GMT

←Older revision		Revision as of 23:00, 14 July 2018
Line 50:		Line 50:
	** The slideshow is also available as a '''[https://tinyurl.com/RamachandranPrincipleYoutube YouTube Video]''' (in English), including explanation of dihedral angles with animated illustration.<imagemap>		** The slideshow is also available as a '''[https://tinyurl.com/RamachandranPrincipleYoutube YouTube Video]''' (in English), including explanation of dihedral angles with animated illustration.<imagemap>
	Image:Youtube.png		Image:Youtube.png
-	default [~~[#Simulations~~: ~~Protein Folding]~~]	+	default [http://tinyurl.com/RamachandranPrincipleYoutube]
	</imagemap>		</imagemap>

Eric Martz at 22:55, 14 July 2018

Eric Martz — Sat, 14 Jul 2018 22:55:34 GMT

←Older revision		Revision as of 22:55, 14 July 2018
Line 48:		Line 48:
	*** [http://tinyurl.com/RamachandranPrinciple Slideshow] in English including explanation of dihedral angles with animated illustration		*** [http://tinyurl.com/RamachandranPrinciple Slideshow] in English including explanation of dihedral angles with animated illustration
	*** [http://tinyurl.com/PrincipioRamachandran Slideshow] in Spanish		*** [http://tinyurl.com/PrincipioRamachandran Slideshow] in Spanish
-	** The slideshow is also available as a '''[https://tinyurl.com/RamachandranPrincipleYoutube YouTube Video]''' (in English), including explanation of dihedral angles with animated illustration.	+	** The slideshow is also available as a '''[https://tinyurl.com/RamachandranPrincipleYoutube YouTube Video]''' (in English), including explanation of dihedral angles with animated illustration.<imagemap>
		+	Image:Youtube.png
		+	default [[#Simulations: Protein Folding]]
		+	</imagemap>
		+
	** A '''quiz''' to self-assess understanding of the tutorial or the slideshow:		** A '''quiz''' to self-assess understanding of the tutorial or the slideshow:
	*** [[Dihedral/Ramachandran_Principle_Quiz\|Quiz in English]]		*** [[Dihedral/Ramachandran_Principle_Quiz\|Quiz in English]]

Eric Martz at 22:41, 14 July 2018

Eric Martz — Sat, 14 Jul 2018 22:41:55 GMT

←Older revision		Revision as of 22:41, 14 July 2018
Line 46:		Line 46:
	** A special "Tutorial" page in Proteopedia (by [[User:Eric_Martz\|Eric Martz]])		** A special "Tutorial" page in Proteopedia (by [[User:Eric_Martz\|Eric Martz]])
	** That tutorial repurposed as a '''slideshow''' with animated images (a Google Docs presentation):		** That tutorial repurposed as a '''slideshow''' with animated images (a Google Docs presentation):
-	*** [http://tinyurl.com/RamachandranPrinciple ~~slideshow~~] in English including explanation of dihedral angles with animated illustration	+	*** [http://tinyurl.com/RamachandranPrinciple Slideshow] in English including explanation of dihedral angles with animated illustration
-	*** [http://tinyurl.com/PrincipioRamachandran ~~slideshow~~] in Spanish	+	*** [http://tinyurl.com/PrincipioRamachandran Slideshow] in Spanish
	** The slideshow is also available as a '''[https://tinyurl.com/RamachandranPrincipleYoutube YouTube Video]''' (in English), including explanation of dihedral angles with animated illustration.		** The slideshow is also available as a '''[https://tinyurl.com/RamachandranPrincipleYoutube YouTube Video]''' (in English), including explanation of dihedral angles with animated illustration.
	** A '''quiz''' to self-assess understanding of the tutorial or the slideshow:		** A '''quiz''' to self-assess understanding of the tutorial or the slideshow:
-	*** [[Dihedral/Ramachandran_Principle_Quiz\|~~quiz~~ in English]]	+	*** [[Dihedral/Ramachandran_Principle_Quiz\|Quiz in English]]
-	*** [[Dihedral/Ramachandran_Principle_Quiz (Spanish)\|~~quiz~~ in Spanish]]	+	*** [[Dihedral/Ramachandran_Principle_Quiz (Spanish)\|Quiz in Spanish]]
	</td></tr><tr><td bgcolor="#f0f0f0">		</td></tr><tr><td bgcolor="#f0f0f0">

Eric Martz at 22:33, 14 July 2018

Eric Martz — Sat, 14 Jul 2018 22:33:51 GMT

←Older revision		Revision as of 22:33, 14 July 2018
Line 40:		Line 40:
	</td></tr><tr><td>		</td></tr><tr><td>

-	[[Image:Dihedral-angles-anim.gif\|right]]	+	<table align="right"><tr><td>
		+	[[Image:Dihedral-angles-anim.gif]][[Image:Rama-youtube-EM.gif\|right]]
		+	</td></tr></table>
	* '''[[Tutorial:Ramachandran_principle_and_phi_psi_angles\|The Ramachandran Principle, Phi (φ) and Psi (ψ) Angles in Proteins]]'''		* '''[[Tutorial:Ramachandran_principle_and_phi_psi_angles\|The Ramachandran Principle, Phi (φ) and Psi (ψ) Angles in Proteins]]'''
	** A special "Tutorial" page in Proteopedia (by [[User:Eric_Martz\|Eric Martz]])		** A special "Tutorial" page in Proteopedia (by [[User:Eric_Martz\|Eric Martz]])

Eric Martz at 22:15, 14 July 2018

Eric Martz — Sat, 14 Jul 2018 22:15:57 GMT

←Older revision		Revision as of 22:15, 14 July 2018
Line 5:		Line 5:
	<table cellpadding=5 border=1 style="border-collapse:collapse;"><tr><td>		<table cellpadding=5 border=1 style="border-collapse:collapse;"><tr><td>
	<!--[[Image:Ramachandran plot general 100K.jpg\|right\|200px]]-->		<!--[[Image:Ramachandran plot general 100K.jpg\|right\|200px]]-->
-	[[Image:~~Dihedral angles~~-AH.~~png~~\|right~~\|200px~~]]	+	[[Image:Phipsi-AH.gif\|right]]

	* '''Definitions of phi and psi''':		* '''Definitions of phi and psi''':

Eric Martz at 21:53, 14 July 2018

Eric Martz — Sat, 14 Jul 2018 21:53:45 GMT

←Older revision		Revision as of 21:53, 14 July 2018
Line 3:		Line 3:
	''This in an index page pointing to several resources on these topics.''		''This in an index page pointing to several resources on these topics.''

-	<table cellpadding=5><tr><td>	+	<table cellpadding=5 border=1 style="border-collapse:collapse;"><tr><td>
	<!--[[Image:Ramachandran plot general 100K.jpg\|right\|200px]]-->		<!--[[Image:Ramachandran plot general 100K.jpg\|right\|200px]]-->
	[[Image:Dihedral angles-AH.png\|right\|200px]]		[[Image:Dihedral angles-AH.png\|right\|200px]]

Eric Martz at 21:49, 14 July 2018

Eric Martz — Sat, 14 Jul 2018 21:49:37 GMT

←Older revision		Revision as of 21:49, 14 July 2018
Line 33:		Line 33:
	</td></tr><tr><td bgcolor="#f0f0f0">		</td></tr><tr><td bgcolor="#f0f0f0">

		+	[[Image:Ramachandran-inspection-AH.png\|right\|200px]]
	* '''[[Tutorial:Ramachandran_Plot_Inspection\|Ramachandran Plot Inspection]]'''		* '''[[Tutorial:Ramachandran_Plot_Inspection\|Ramachandran Plot Inspection]]'''
	** A special "Tutorial" page in Proteopedia (by [[User:Angel_Herraez\|Angel Herráez]]) and an equivalent [http://biomodel.uah.es/model1j/prot/Ramachandran.htm page in Spanish]		** A special "Tutorial" page in Proteopedia (by [[User:Angel_Herraez\|Angel Herráez]]) and an equivalent [http://biomodel.uah.es/model1j/prot/Ramachandran.htm page in Spanish]

Eric Martz at 21:45, 14 July 2018

Eric Martz — Sat, 14 Jul 2018 21:45:55 GMT

←Older revision		Revision as of 21:45, 14 July 2018
Line 7:		Line 7:
	[[Image:Dihedral angles-AH.png\|right\|200px]]		[[Image:Dihedral angles-AH.png\|right\|200px]]

-	* '''~~Definition~~ of phi and psi''':	+	* '''Definitions of phi and psi''':
	:* Simplified 3D models in JSmol that can be rotated with your mouse, and set to various dihedral angles: [http://biomodel.uah.es/model5/prot/diedros_en.htm in English] and [http://biomodel.uah.es/model5/prot/diedros.htm Spanish].		:* Simplified 3D models in JSmol that can be rotated with your mouse, and set to various dihedral angles: [http://biomodel.uah.es/model5/prot/diedros_en.htm in English] and [http://biomodel.uah.es/model5/prot/diedros.htm Spanish].
	</td></tr><tr><td bgcolor="#f0f0f0">		</td></tr><tr><td bgcolor="#f0f0f0">

Eric Martz at 21:45, 14 July 2018

Eric Martz — Sat, 14 Jul 2018 21:45:00 GMT

←Older revision		Revision as of 21:45, 14 July 2018
Line 52:		Line 52:

	* [http://clfs690.alivetek.org/CLFS690/amino/animballjmol.htm Another animation] of phi and psi angles connected to a Ramachandran plot (by David Jollie)		* [http://clfs690.alivetek.org/CLFS690/amino/animballjmol.htm Another animation] of phi and psi angles connected to a Ramachandran plot (by David Jollie)
		+	</td></tr><tr><td>

	* [[Ramachandran outlier]] showcases a special case where a residue is not conforming to the favored values in the Ramachandran plot.		* [[Ramachandran outlier]] showcases a special case where a residue is not conforming to the favored values in the Ramachandran plot.
	</td></tr></table>		</td></tr></table>