Flavodoxin - Revision history

Michal Harel at 08:11, 3 July 2019

Michal Harel — Wed, 03 Jul 2019 08:11:20 GMT

←Older revision		Revision as of 08:11, 3 July 2019
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	</StructureSection>		</StructureSection>

-	== 3D Structures of Flavodoxin ==
-
-	Updated on {{REVISIONDAY2}}-{{MONTHNAME\|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
-	{{#tree:id=OrganizedByTopic\|openlevels=0\|
-
-	* Apo FDX
-
-	**[[2kqu]], [[1dx9]] – AnFDX (mutant) apo – ''Anabanea'' – NMR<br />
-	**[[2bmv]] – HpFDX apo - ''Helicobacter pylori''<br />
-	**[[3d7n]] – FDX apo – ''Agrobacterium tumefaciens''<br />
-	**[[2rg1]] - EcFDX WrbA apo - ''Escherichia coli''<br />
-	**[[2hna]], [[2hnb]], [[2m6r]], [[2m6s]] – EcFDX apo – NMR<br />
-	**[[1qhe]], [[1ftg]] – nFDX apo – Nostoc<br />
-	**[[1bu5]] – DvFDX apo+riboflavin - ''Desulfovibrio vulgaris''<br />
-	**[[5ljl]] - SpFDX - ''Streptococcus pneumoniae''<br />
-
-	* FDX containing FMN oxidized (quinone)
-
-	**[[3f6r]], [[3f6s]], [[3kap]] – DdFDX-ox - ''Desulfovibrio desulfuricans''<br />
-	**[[4heq]] - FDX-ox – ''Desulfovibrio gigas'' <br />
-	**[[1ag9]] – EcFDX-ox<br />
-	**[[2mok]] – EcFDX-ox – NMR<br />
-	**[[2mt9]], [[2mtb]] – EcFDX-ox 2 – NMR<br />
-	**[[1flv]] – nFDX-ox<br />
-	**[[1xyy]], [[1j9g]], [[1c7f]], [[1akr]], [[1akt]], [[1akw]] – DvFDX-ox (mutant)<br />
-	**[[2fx2]], [[3fx2]], [[4fx2]], [[5fx2]], [[1fx1]] – DvFDX-ox<br />
-	**[[1czk]], [[1czr]] – SeFDX-ox (mutant) - ''Synechococcus elongates''<br />
-	**[[1czn]] – SeFDX-ox I<br />
-	**[[1ofv]] – SeFDX-ox II<br />
-	**[[1czu]], [[1d03]] - SeFDX-ox II<br />
-	**[[2fdx]], [[1fld]], [[1fvx]], [[2fax]], [[3nll]], [[4nll]], [[4nul]], [[5nll]] – CbFDX-ox (mutant) - ''Clostridium beijerinckii''<br />
-	**[[2fcr]] – FDX-ox – ''Chondrus crispus''<br />
-	**[[5veg]] - FDX-ox – ''Lactobacillus reuteri'' <br />
-	**[[5k9b]] - FDX-ox II – ''Azotobacter vinelandii'' <br />
-	**[[5ljp]] - AnFDX-ox (mutant) <br />
-	**[[1fue]] – HpFDX-ox<br />
-	**[[4j8p]] - FDX-ox – ''Bacterioides uniformis'' <br />
-	**[[1i1o]] - DvFDX-ox <br />
-	**[[5yob]], [[5yoc]], [[5yoe]], [[5yog]] - DvFDX-ox (mutant) <br />
-	**[[5lji]] - SpFDX-ox <br />
-	**[[6ohl]] - FnFDX-ox – ''Fusobacterium nucleatum''<br />
-	**[[6ohk]] - FnFDX-ox (mutant) <br />
-	**[[5wid]] – FDX-ox - ''Methanosarcina acetivorans''<br />
-
-	* FDX containing FMNH (semiquinone)
-
-	**[[2x2o]], [[2x2p]], [[6fsg]], [[6fsi]], [[6ft1]], [[6gaq]] – NrdI-sq – ''Bacillus cereus''<br />
-	**[[3kaq]], [[3f90]] – DdFDX-sq <br />
-	**[[1xt6]], [[1wsw]], [[1xyv]], [[1akv]], [[1wsb]] - DvFDX-sq (mutant)<br />
-	**[[1czh]], [[1czl]] - SeFDX-sq (mutant)<br />
-	**[[2fox]], [[5nul]]– CbFDX-sq<br />
-
-	* FDX containing FMNH2 (hydroquinone)
-
-	**[[2fz5]] – FDX-red – ''Megasphaera elsdenii'' – NMR<br />
-	**[[1c7e]], [[1aku]], [[1akq]] - DvFDX-red (mutant)<br />
-	**[[1czo]] - SeFDX-red (mutant)<br />
-	**[[1d04]] – SeFDX-red<br />
-	**[[1fla]], [[1fln]], [[2flv]], [[2fvx]], [[5ull]], [[6nul]] – CbFDX-red (mutant)<br />
-
-	* Other FDX
-
-	**[[3esx]], [[3esy]], [[3esz]], [[2v5u]], [[2v5v]], [[1obo]], [[1obv]] - AnFDX (mutant)<br />
-	**[[1rcf]], [[1flv]] - AnFDX<br />
-	**[[2wc1]] – FDX – ''Rhodobacter capsulatus''<br />
-	**[[2w5u]] – HpFDX+C3 inhibitor 1fue - HpFDX<br />
-	**[[2kaq]] – DdFDX <br />
-	**[[2r97]], [[2r96]] – EcFDX WrbA<br />
-	**[[1ahn]] – EcFDX<br />
-	**[[2q9u]] – FDX di-iron – ''Giardia intestinalis''<br />
-	**[[2ark]] – FDX – ''Aquifex aeolicus''<br />
-	**[[1yob]] – FDX II – ''Azotobacter vinelandii''<br />
-	**[[1j9e]], [[1f4p]], [[1i10]], [[1azl]] – DvFDX (mutant)<br />
-	**[[1j8q]] - DvFDX<br />
-	}}
	== References ==		== References ==
	<references/>		<references/>

	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel at 08:10, 3 July 2019

Michal Harel — Wed, 03 Jul 2019 08:10:24 GMT

←Older revision		Revision as of 08:10, 3 July 2019
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	*<scene name='41/413119/Cv/5'>Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion</scene>.		*<scene name='41/413119/Cv/5'>Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion</scene>.
	*<scene name='41/413119/Cv/6'>Cl coordination site</scene>. Water molecules shown as red spheres.		*<scene name='41/413119/Cv/6'>Cl coordination site</scene>. Water molecules shown as red spheres.
-		+
		+	== 3D Structures of Flavodoxin ==
		+	[[Flavodoxin 3D structures]]
		+
	</StructureSection>		</StructureSection>

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	**[[4heq]] - FDX-ox – ''Desulfovibrio gigas'' <br />		**[[4heq]] - FDX-ox – ''Desulfovibrio gigas'' <br />
	**[[1ag9]] – EcFDX-ox<br />		**[[1ag9]] – EcFDX-ox<br />
		+	**[[2mok]] – EcFDX-ox – NMR<br />
		+	**[[2mt9]], [[2mtb]] – EcFDX-ox 2 – NMR<br />
	**[[1flv]] – nFDX-ox<br />		**[[1flv]] – nFDX-ox<br />
	**[[1xyy]], [[1j9g]], [[1c7f]], [[1akr]], [[1akt]], [[1akw]] – DvFDX-ox (mutant)<br />		**[[1xyy]], [[1j9g]], [[1c7f]], [[1akr]], [[1akt]], [[1akw]] – DvFDX-ox (mutant)<br />
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	**[[5yob]], [[5yoc]], [[5yoe]], [[5yog]] - DvFDX-ox (mutant) <br />		**[[5yob]], [[5yoc]], [[5yoe]], [[5yog]] - DvFDX-ox (mutant) <br />
	**[[5lji]] - SpFDX-ox <br />		**[[5lji]] - SpFDX-ox <br />
		+	**[[6ohl]] - FnFDX-ox – ''Fusobacterium nucleatum''<br />
		+	**[[6ohk]] - FnFDX-ox (mutant) <br />
		+	**[[5wid]] – FDX-ox - ''Methanosarcina acetivorans''<br />

	* FDX containing FMNH (semiquinone)		* FDX containing FMNH (semiquinone)

-	**[[2x2o]], [[2x2p]] – NrdI-sq – ''Bacillus cereus''<br />	+	**[[2x2o]], [[2x2p]], [[6fsg]], [[6fsi]], [[6ft1]], [[6gaq]] – NrdI-sq – ''Bacillus cereus''<br />
	**[[3kaq]], [[3f90]] – DdFDX-sq <br />		**[[3kaq]], [[3f90]] – DdFDX-sq <br />
	**[[1xt6]], [[1wsw]], [[1xyv]], [[1akv]], [[1wsb]] - DvFDX-sq (mutant)<br />		**[[1xt6]], [[1wsw]], [[1xyv]], [[1akv]], [[1wsb]] - DvFDX-sq (mutant)<br />

Alexander Berchansky at 12:49, 28 March 2019

Alexander Berchansky — Thu, 28 Mar 2019 12:49:35 GMT

←Older revision		Revision as of 12:49, 28 March 2019
Line 3:		Line 3:
	[[Flavodoxin]] (FDX) is a bacterial protein which contains flavin mononucleotide (FMN) or flavin adenine dinucleotide (FAD). It participates in nitrogen metabolism and reduces N<sub>2</sub> to NH<sub>3</sub> while changing from its oxidized quinone state FDX-ox via semiquinone FDX-sq to its reduced hydroquinone state FDX-red<ref>PMID:9416602</ref>. '''NrdI''' is a FDX which is involved in ribonucleotide reduction. '''WrbA (Tryptophan Repressor-Binding Protein)''' is also FDX. In ''E. coli'' there are 2 distinct flavodoxins: FDX I and II.		[[Flavodoxin]] (FDX) is a bacterial protein which contains flavin mononucleotide (FMN) or flavin adenine dinucleotide (FAD). It participates in nitrogen metabolism and reduces N<sub>2</sub> to NH<sub>3</sub> while changing from its oxidized quinone state FDX-ox via semiquinone FDX-sq to its reduced hydroquinone state FDX-red<ref>PMID:9416602</ref>. '''NrdI''' is a FDX which is involved in ribonucleotide reduction. '''WrbA (Tryptophan Repressor-Binding Protein)''' is also FDX. In ''E. coli'' there are 2 distinct flavodoxins: FDX I and II.

-	*<scene name='41/413119/Cv/3'>Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion</scene>.	+	*<scene name='41/413119/Cv/5'>Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion</scene>.
-	*<scene name='41/413119/Cv/4'>Cl coordination site</scene>. Water molecules shown as red spheres.	+	*<scene name='41/413119/Cv/6'>Cl coordination site</scene>. Water molecules shown as red spheres.

	</StructureSection>		</StructureSection>

Michal Harel at 07:13, 28 May 2018

Michal Harel — Mon, 28 May 2018 07:13:14 GMT

←Older revision		Revision as of 07:13, 28 May 2018
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	**[[2fdx]], [[1fld]], [[1fvx]], [[2fax]], [[3nll]], [[4nll]], [[4nul]], [[5nll]] – CbFDX-ox (mutant) - ''Clostridium beijerinckii''<br />		**[[2fdx]], [[1fld]], [[1fvx]], [[2fax]], [[3nll]], [[4nll]], [[4nul]], [[5nll]] – CbFDX-ox (mutant) - ''Clostridium beijerinckii''<br />
	**[[2fcr]] – FDX-ox – ''Chondrus crispus''<br />		**[[2fcr]] – FDX-ox – ''Chondrus crispus''<br />
		+	**[[5veg]] - FDX-ox – ''Lactobacillus reuteri'' <br />
		+	**[[5k9b]] - FDX-ox II – ''Azotobacter vinelandii'' <br />
		+	**[[5ljp]] - AnFDX-ox (mutant) <br />
	**[[1fue]] – HpFDX-ox<br />		**[[1fue]] – HpFDX-ox<br />
	**[[4j8p]] - FDX-ox – ''Bacterioides uniformis'' <br />		**[[4j8p]] - FDX-ox – ''Bacterioides uniformis'' <br />
	**[[1i1o]] - DvFDX-ox <br />		**[[1i1o]] - DvFDX-ox <br />
		+	**[[5yob]], [[5yoc]], [[5yoe]], [[5yog]] - DvFDX-ox (mutant) <br />
	**[[5lji]] - SpFDX-ox <br />		**[[5lji]] - SpFDX-ox <br />

Michal Harel at 09:48, 18 May 2017

Michal Harel — Thu, 18 May 2017 09:48:37 GMT

←Older revision		Revision as of 09:48, 18 May 2017
Line 22:		Line 22:
	**[[1qhe]], [[1ftg]] – nFDX apo – Nostoc<br />		**[[1qhe]], [[1ftg]] – nFDX apo – Nostoc<br />
	**[[1bu5]] – DvFDX apo+riboflavin - ''Desulfovibrio vulgaris''<br />		**[[1bu5]] – DvFDX apo+riboflavin - ''Desulfovibrio vulgaris''<br />
		+	**[[5ljl]] - SpFDX - ''Streptococcus pneumoniae''<br />

	* FDX containing FMN oxidized (quinone)		* FDX containing FMN oxidized (quinone)
Line 40:		Line 41:
	**[[4j8p]] - FDX-ox – ''Bacterioides uniformis'' <br />		**[[4j8p]] - FDX-ox – ''Bacterioides uniformis'' <br />
	**[[1i1o]] - DvFDX-ox <br />		**[[1i1o]] - DvFDX-ox <br />
		+	**[[5lji]] - SpFDX-ox <br />

	* FDX containing FMNH (semiquinone)		* FDX containing FMNH (semiquinone)

Alexander Berchansky at 11:36, 6 June 2016

Alexander Berchansky — Mon, 06 Jun 2016 11:36:35 GMT

←Older revision		Revision as of 11:36, 6 June 2016
Line 1:		Line 1:
-	<StructureSection load='2bmv' size='350' side='right' scene='' caption='Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion (PDB code [[2bmv]]) '>	+	<StructureSection load='2bmv' size='350' side='right' scene='41/413119/Cv/2' caption='Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion (PDB code [[2bmv]]) '>

-	[[Flavodoxin]] (FDX) is a bacterial protein which contains flavin mononucleotide (FMN) or flavin adenine dinucleotide (FAD). It participates in nitrogen metabolism and reduces N<sub>2</sub> to NH<sub>3</sub> while changing from its oxidized quinone state FDX-ox via semiquinone FDX-sq to its reduced hydroquinone state FDX-red<ref>PMID:9416602</ref>. '''NrdI''' is a FDX which is involved in ribonucleotide reduction. '''WrbA (Tryptophan Repressor-Binding Protein)''' is also FDX. In ''E. coli'' there are 2 distinct flavodoxins: FDX I and II.	+	[[Flavodoxin]] (FDX) is a bacterial protein which contains flavin mononucleotide (FMN) or flavin adenine dinucleotide (FAD). It participates in nitrogen metabolism and reduces N<sub>2</sub> to NH<sub>3</sub> while changing from its oxidized quinone state FDX-ox via semiquinone FDX-sq to its reduced hydroquinone state FDX-red<ref>PMID:9416602</ref>. '''NrdI''' is a FDX which is involved in ribonucleotide reduction. '''WrbA (Tryptophan Repressor-Binding Protein)''' is also FDX. In ''E. coli'' there are 2 distinct flavodoxins: FDX I and II.
		+
		+	*<scene name='41/413119/Cv/3'>Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion</scene>.
		+	*<scene name='41/413119/Cv/4'>Cl coordination site</scene>. Water molecules shown as red spheres.
		+
	</StructureSection>		</StructureSection>

Michal Harel at 17:50, 22 January 2016

Michal Harel — Fri, 22 Jan 2016 17:50:05 GMT

←Older revision		Revision as of 17:50, 22 January 2016
Line 1:		Line 1:
	<StructureSection load='2bmv' size='350' side='right' scene='' caption='Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion (PDB code [[2bmv]]) '>		<StructureSection load='2bmv' size='350' side='right' scene='' caption='Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion (PDB code [[2bmv]]) '>

-	[[Flavodoxin]] (FDX) is a bacterial protein which contains flavin mononucleotide (FMN) or flavin adenine dinucleotide (FAD). It participates in nitrogen metabolism and reduces N2 to ~~NH3~~ while changing from its oxidized quinone state FDX-ox via semiquinone FDX-sq to its reduced hydroquinone state FDX-red<ref>PMID:9416602</ref>. '''NrdI''' is a FDX which is involved in ribonucleotide reduction. '''WrbA (Tryptophan Repressor-Binding Protein)''' is also FDX. In ''E. coli'' there are 2 distinct flavodoxins: FDX I and II.	+	[[Flavodoxin]] (FDX) is a bacterial protein which contains flavin mononucleotide (FMN) or flavin adenine dinucleotide (FAD). It participates in nitrogen metabolism and reduces N<sub>2</sub> to NH<sub>3</sub> while changing from its oxidized quinone state FDX-ox via semiquinone FDX-sq to its reduced hydroquinone state FDX-red<ref>PMID:9416602</ref>. '''NrdI''' is a FDX which is involved in ribonucleotide reduction. '''WrbA (Tryptophan Repressor-Binding Protein)''' is also FDX. In ''E. coli'' there are 2 distinct flavodoxins: FDX I and II.
	</StructureSection>		</StructureSection>

Michal Harel at 17:48, 22 January 2016

Michal Harel — Fri, 22 Jan 2016 17:48:36 GMT

←Older revision		Revision as of 17:48, 22 January 2016
Line 1:		Line 1:
	<StructureSection load='2bmv' size='350' side='right' scene='' caption='Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion (PDB code [[2bmv]]) '>		<StructureSection load='2bmv' size='350' side='right' scene='' caption='Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion (PDB code [[2bmv]]) '>

-	[[Flavodoxin]] (FDX) is a bacterial protein which contains flavin mononucleotide (FMN) or flavin adenine dinucleotide (FAD). It participates in nitrogen metabolism and reduces N2 to NH3 while changing from its oxidized quinone state FDX-ox via semiquinone FDX-sq to its reduced hydroquinone state FDX-red<ref>PMID:~~8747466~~</ref>. '''NrdI''' is a FDX which is involved in ribonucleotide reduction. '''WrbA (Tryptophan Repressor-Binding Protein)''' is also FDX. In ''E. coli'' there are 2 distinct flavodoxins: FDX I and II.	+	[[Flavodoxin]] (FDX) is a bacterial protein which contains flavin mononucleotide (FMN) or flavin adenine dinucleotide (FAD). It participates in nitrogen metabolism and reduces N2 to NH3 while changing from its oxidized quinone state FDX-ox via semiquinone FDX-sq to its reduced hydroquinone state FDX-red<ref>PMID:9416602</ref>. '''NrdI''' is a FDX which is involved in ribonucleotide reduction. '''WrbA (Tryptophan Repressor-Binding Protein)''' is also FDX. In ''E. coli'' there are 2 distinct flavodoxins: FDX I and II.
	</StructureSection>		</StructureSection>

Michal Harel at 17:46, 22 January 2016

Michal Harel — Fri, 22 Jan 2016 17:46:58 GMT

←Older revision		Revision as of 17:46, 22 January 2016
Line 1:		Line 1:
-		+	<StructureSection load='2bmv' size='350' side='right' scene='' caption='Apo-Flavodoxin from Helicobacter pylori complexed with benzamidine and chloride ion (PDB code [[2bmv]]) '>
-	<StructureSection load='2bmv' size='350' side='right' scene='' caption='Apo-Flavodoxin from ''Helicobacter pylori'' complexed with benzamidine and chloride ion (PDB code [[2bmv]]) '>	+

	[[Flavodoxin]] (FDX) is a bacterial protein which contains flavin mononucleotide (FMN) or flavin adenine dinucleotide (FAD). It participates in nitrogen metabolism and reduces N2 to NH3 while changing from its oxidized quinone state FDX-ox via semiquinone FDX-sq to its reduced hydroquinone state FDX-red<ref>PMID:8747466</ref>. '''NrdI''' is a FDX which is involved in ribonucleotide reduction. '''WrbA (Tryptophan Repressor-Binding Protein)''' is also FDX. In ''E. coli'' there are 2 distinct flavodoxins: FDX I and II.		[[Flavodoxin]] (FDX) is a bacterial protein which contains flavin mononucleotide (FMN) or flavin adenine dinucleotide (FAD). It participates in nitrogen metabolism and reduces N2 to NH3 while changing from its oxidized quinone state FDX-ox via semiquinone FDX-sq to its reduced hydroquinone state FDX-red<ref>PMID:8747466</ref>. '''NrdI''' is a FDX which is involved in ribonucleotide reduction. '''WrbA (Tryptophan Repressor-Binding Protein)''' is also FDX. In ''E. coli'' there are 2 distinct flavodoxins: FDX I and II.

Michal Harel at 17:46, 22 January 2016

Michal Harel — Fri, 22 Jan 2016 17:46:18 GMT

←Older revision		Revision as of 17:46, 22 January 2016
Line 1:		Line 1:
-	{{STRUCTURE_2bmv\| PDB=2bmv \| SIZE=300\| SCENE=Flavodoxin/Cv/1 \|right\|CAPTION=Apo-Flavodoxin from ''Helicobacter pylori'' complexed with benzamidine and chloride ion, [[2bmv]] }}

-	[[Flavodoxin]] (FDX) is a bacterial protein which contains flavin mononucleotide (FMN) or flavin adenine dinucleotide (FAD). It participates in nitrogen metabolism and reduces N2 to NH3 while changing from its oxidized quinone state FDX-ox via semiquinone FDX-sq to its reduced hydroquinone state FDX-red. '''NrdI''' is a FDX which is involved in ribonucleotide reduction. '''WrbA (Tryptophan Repressor-Binding Protein)''' is also FDX. In ''E. coli'' there are 2 distinct FDX I and II. ~~The space filling objects are of chloride ion and benzamidine.~~	+	<StructureSection load='2bmv' size='350' side='right' scene='' caption='Apo-Flavodoxin from ''Helicobacter pylori'' complexed with benzamidine and chloride ion (PDB code [[2bmv]]) '>
		+
		+	[[Flavodoxin]] (FDX) is a bacterial protein which contains flavin mononucleotide (FMN) or flavin adenine dinucleotide (FAD). It participates in nitrogen metabolism and reduces N2 to NH3 while changing from its oxidized quinone state FDX-ox via semiquinone FDX-sq to its reduced hydroquinone state FDX-red<ref>PMID:8747466</ref>. '''NrdI''' is a FDX which is involved in ribonucleotide reduction. '''WrbA (Tryptophan Repressor-Binding Protein)''' is also FDX. In ''E. coli'' there are 2 distinct flavodoxins: FDX I and II.
		+	</StructureSection>

	== 3D Structures of Flavodoxin ==		== 3D Structures of Flavodoxin ==
Line 67:		Line 69:
	**[[1j8q]] - DvFDX<br />		**[[1j8q]] - DvFDX<br />
	}}		}}
		+	== References ==
		+	<references/>
		+
	[[Category:Topic Page]]		[[Category:Topic Page]]