Forms of DNA - Revision history

Angel Herraez: moving "see also" links to the bottom, and fixing one of them

Angel Herraez — Thu, 24 Aug 2023 17:42:24 GMT

moving "see also" links to the bottom, and fixing one of them

←Older revision		Revision as of 17:42, 24 August 2023
Line 1:		Line 1:
-	~~See DNA - History of the discovery and current applications (Hebrew)~~	+	== A comparative representation of the three forms of DNA ==
-		+
-	~~''See Also: [[DNA]] and [[Z-DNA]]''~~	+
-		+
-	=== A comparative representation of the three forms of DNA ===	+
	''Sources'' <ref>Nucleic Acid Canonical Coordinates http://nucleix.mbu.iisc.ac.in/nacc/index.html</ref>		''Sources'' <ref>Nucleic Acid Canonical Coordinates http://nucleix.mbu.iisc.ac.in/nacc/index.html</ref>

Line 50:		Line 46:
	</jmol>		</jmol>

-	=== Helical Parameters of the three forms of DNA ===	+	== Helical Parameters of the three forms of DNA ==

	DNA is a very flexible molecule and has the ability to exist in various forms based on the environmental conditions. Naturally occurring DNA double helices are classified into A, B and Z-types. A and B-forms of DNA are the right handed forms whereas [[Z-DNA]] is the left handed form. When hydrated the DNA generally assumes B-form. The A conformation is found when there is little water to interact with the helix and is also the conformation adopted by the RNA. The formation of Z-DNA occurs with the methylation of deoxycytosine residues and also during transcription where negative supercoiling stabilizes it.		DNA is a very flexible molecule and has the ability to exist in various forms based on the environmental conditions. Naturally occurring DNA double helices are classified into A, B and Z-types. A and B-forms of DNA are the right handed forms whereas [[Z-DNA]] is the left handed form. When hydrated the DNA generally assumes B-form. The A conformation is found when there is little water to interact with the helix and is also the conformation adopted by the RNA. The formation of Z-DNA occurs with the methylation of deoxycytosine residues and also during transcription where negative supercoiling stabilizes it.
Line 186:		Line 182:
	</StructureSection>		</StructureSection>

-	== References==	+	== See also ==
		+	* [[DNA - History of the discovery and current applications (Hebrew)]]
		+	* [[DNA]]
		+	* [[Z-DNA]]
		+
		+	== References ==
	<references/>		<references/>

Karsten Theis at 16:45, 5 January 2022

Karsten Theis — Wed, 05 Jan 2022 16:45:42 GMT

←Older revision		Revision as of 16:45, 5 January 2022
Line 77:		Line 77:
	\|Glycosidic bond configuration<br\>dA,dT,dC<br\>dG \|\|align="center"\| <br\>anti<br\>anti \|\|align="center"\| <br\>anti<br\>anti \|\|align="center"\| <br\>anti<br\>syn		\|Glycosidic bond configuration<br\>dA,dT,dC<br\>dG \|\|align="center"\| <br\>anti<br\>anti \|\|align="center"\| <br\>anti<br\>anti \|\|align="center"\| <br\>anti<br\>syn
	\|-		\|-
-	\|[[Sugar pucker\|Sugar ~~ring~~ pucker]]<br\>dA,dT,dC<br\>dG \|\|align="center"\| <br\>C3'-endo<br\>C3'-endo \|\|align="center"\|<br\> C2'-endo<br\>C2'-endo \|\|align="center"\| <br\>C2'-endo<br\>C3'-endo	+	\|[[Sugar ring pucker\|Sugar pucker]]<br\>dA,dT,dC<br\>dG \|\|align="center"\| <br\>C3'-endo<br\>C3'-endo \|\|align="center"\|<br\> C2'-endo<br\>C2'-endo \|\|align="center"\| <br\>C2'-endo<br\>C3'-endo
	\|-		\|-
	\|Intrastrand phosphate-phosphate distance [Å] <br\>dA,dT,dC<br\>dG \|\|align="center"\| <br\>5.9<br\>5.9\|\|align="center"\| <br\>7.0<br\>7.0\|\|align="center"\| <br\>7.0<br\> 5.9		\|Intrastrand phosphate-phosphate distance [Å] <br\>dA,dT,dC<br\>dG \|\|align="center"\| <br\>5.9<br\>5.9\|\|align="center"\| <br\>7.0<br\>7.0\|\|align="center"\| <br\>7.0<br\> 5.9

Karsten Theis at 16:45, 5 January 2022

Karsten Theis — Wed, 05 Jan 2022 16:45:04 GMT

←Older revision		Revision as of 16:45, 5 January 2022
Line 77:		Line 77:
	\|Glycosidic bond configuration<br\>dA,dT,dC<br\>dG \|\|align="center"\| <br\>anti<br\>anti \|\|align="center"\| <br\>anti<br\>anti \|\|align="center"\| <br\>anti<br\>syn		\|Glycosidic bond configuration<br\>dA,dT,dC<br\>dG \|\|align="center"\| <br\>anti<br\>anti \|\|align="center"\| <br\>anti<br\>anti \|\|align="center"\| <br\>anti<br\>syn
	\|-		\|-
-	\|Sugar pucker<br\>dA,dT,dC<br\>dG \|\|align="center"\| <br\>C3'-endo<br\>C3'-endo \|\|align="center"\|<br\> C2'-endo<br\>C2'-endo \|\|align="center"\| <br\>C2'-endo<br\>C3'-endo	+	\|[[Sugar pucker\|Sugar ring pucker]]<br\>dA,dT,dC<br\>dG \|\|align="center"\| <br\>C3'-endo<br\>C3'-endo \|\|align="center"\|<br\> C2'-endo<br\>C2'-endo \|\|align="center"\| <br\>C2'-endo<br\>C3'-endo
	\|-		\|-
	\|Intrastrand phosphate-phosphate distance [Å] <br\>dA,dT,dC<br\>dG \|\|align="center"\| <br\>5.9<br\>5.9\|\|align="center"\| <br\>7.0<br\>7.0\|\|align="center"\| <br\>7.0<br\> 5.9		\|Intrastrand phosphate-phosphate distance [Å] <br\>dA,dT,dC<br\>dG \|\|align="center"\| <br\>5.9<br\>5.9\|\|align="center"\| <br\>7.0<br\>7.0\|\|align="center"\| <br\>7.0<br\> 5.9

Angel Herraez: adding extra controls on animation

Angel Herraez — Tue, 22 Dec 2020 12:41:40 GMT

adding extra controls on animation

←Older revision		Revision as of 12:41, 22 December 2020
Line 94:		Line 94:
	This animated model displays the structural transformation between A and B forms of DNA.		This animated model displays the structural transformation between A and B forms of DNA.

-	<jmol>	+	Rendering: <jmol>
	<jmolButton>		<jmolButton>
	<target>AtoB</target>		<target>AtoB</target>
Line 100:		Line 100:
	<text>Sticks</text>		<text>Sticks</text>
	</jmolButton>		</jmolButton>
-
	<jmolButton>		<jmolButton>
	<target>AtoB</target>		<target>AtoB</target>
Line 106:		Line 105:
	<text>Spacefill</text>		<text>Spacefill</text>
	</jmolButton>		</jmolButton>
		+	</jmol> <scene name='43/438459/Spacefill_animated/3'>Reset the model</scene>
		+
		+
		+	Control of animation:<jmol>
		+	<jmolRadioGroup>
		+	<target>AtoB</target>
		+	<vertical>true</vertical>
		+	<item>
		+	<script>frame pause; frame last;</script>
		+	<text>A-DNA (without conformational animation)</text>
		+	</item>
		+	<item>
		+	<script>frame pause; frame rewind;</script>
		+	<text>B-DNA (without conformational animation)</text>
		+	</item>
		+	<item>
		+	<script>frame play;</script>
		+	<text>restore animated conformational change</text>
		+	<checked>true</checked>
		+	</item>
		+	</jmolRadioGroup>
	</jmol>		</jmol>

-	<scene name='43/438459/Spacefill_animated/3'>Reset the model</scene>

	<!--Group of actions which show base pair shift, sugar pucker change and difference in space filling models in A and B DNA -->		<!--Group of actions which show base pair shift, sugar pucker change and difference in space filling models in A and B DNA -->
-	Other interesting views:	+	Other interesting views:<jmol>
-	<jmol>	+
	<jmolRadioGroup>		<jmolRadioGroup>
	<target>AtoB</target>		<target>AtoB</target>
	<vertical>true</vertical>		<vertical>true</vertical>
	<item>		<item>
-	<script>~~moveto 1 0 0 1 0 180 0 0;~~ spin off; select all; cartoon only; spacefill 90; wireframe 50; centre all; zoom 180;	+	<script>spin off; select all; cartoon only; spacefill 90; wireframe 50; centre all; zoom 180;
	color translucent 0.9; select 9:A,4:B; hbonds calculate; hbonds 0.09; color opaque;		color translucent 0.9; select 9:A,4:B; hbonds calculate; hbonds 0.09; color opaque;
	set echo bottom centre; font echo 18 serif bold; color echo green; echo "Base pair shift between A and B DNA";		set echo bottom centre; font echo 18 serif bold; color echo green; echo "Base pair shift between A and B DNA";
-	~~anim mode palindrome; anim on~~;</script>	+	moveto 1 0 0 1 0 180 0 0;</script>
	<text>Shift in base pair between A- and B- DNA</text>		<text>Shift in base pair between A- and B- DNA</text>
	</item>		</item>
	<item>		<item>
-	<script>~~moveto 1 0 0 1 0 400 0 0;~~ spin off; select all; spacefill only; spacefill 90; wireframe 50;	+	<script>spin off; select all; spacefill only; spacefill 90; wireframe 50;
	color translucent 0.9; select 9:A; color opaque; centre selected; zoom 400;		color translucent 0.9; select 9:A; color opaque; centre selected; zoom 400;
-	set echo bottom left; font echo 18 serif bold; color echo green; echo "Change in sugar puckering \|from C2' endo in B-DNA to C3' endo in A-DNA";	+	set echo bottom left; font echo 18 serif bold; color echo green; echo "Change in sugar puckering \|from C2' endo in B-DNA to C3' endo in A-DNA";
-	~~anim mode palindrome; anim on~~;</script>	+	moveto 1 0 0 1 0 400 0 0;</script>
	<text>Change in sugar puckering from C2' endo in B-DNA to C3' endo in A-DNA</text>		<text>Change in sugar puckering from C2' endo in B-DNA to C3' endo in A-DNA</text>
		+	</item>
		+	<item>
		+	<script>set echo bottom centre; echo;
		+	centre all; moveto 1 {688 565 -455 102.5} 100 0 0; select all; spacefill only; spin on;
		+	color opaque;</script>
		+	<text>Original display (spacefill)</text>
	</item>		</item>
	</jmolRadioGroup>		</jmolRadioGroup>
Line 161:		Line 185:

	</StructureSection>		</StructureSection>
		+
	== References==		== References==
	<references/>		<references/>

Angel Herraez: rewriting the source code for the aimated transition, to fix nonfunctioning part

Angel Herraez — Fri, 18 Dec 2020 19:54:46 GMT

rewriting the source code for the aimated transition, to fix nonfunctioning part

←Older revision		Revision as of 19:54, 18 December 2020
Line 103:		Line 103:
	<jmolButton>		<jmolButton>
	<target>AtoB</target>		<target>AtoB</target>
-	<script>spacefill only;</script>	+	<script>spacefill only; save state ab;</script>
	<text>Spacefill</text>		<text>Spacefill</text>
	</jmolButton>		</jmolButton>
	</jmol>		</jmol>

-	</~~StructureSection>~~	+	<scene name='43/438459/Spacefill_animated/3'>Reset the model</scene>
-		+
-		+
-	~~<!--To activate the below options saving initial state again as restore state after above step is not working-->~~	+
-	~~<jmol>~~	+
-	~~<jmolButton>~~	+
-	~~<target>AtoB<~~/~~target>~~	+
-	~~<script>moveto 1.0 0 0 1 0 100.0 0.0 0.0;load~~/~~wiki/images/9/9e/Morph_a-b.pdb;animation ON; animation mode PALINDROME; cartoon ON;save state ab</script~~> ~~<!-- This is required as~~ the ~~initial save state is unable to restore state-->~~	+
-	~~<text>Click here and activate the below options </text>~~	+
-	~~</jmolButton>~~	+
-	</~~jmol~~>	+

-	<!--Group of ~~Actions~~ which show base pair shift, sugar pucker change and difference in space filling models in A and B DNA -->	+	<!--Group of actions which show base pair shift, sugar pucker change and difference in space filling models in A and B DNA -->
		+	Other interesting views:
	<jmol>		<jmol>
-	<jmolRadioGroup>	+	<jmolRadioGroup>
-	<target>AtoB</target>	+	<target>AtoB</target>
-	<~~item~~>	+	<vertical>true</vertical>
-	<script> moveto 1.0 0 0 1 0 180.0 0.0 0.0;restore state ab; animation mode palindrome;animation ON;cartoon ON;spacefill on; spacefill 90;wireframe on;wireframe 50;zoom 180;select 9:a,4:b;hbonds ON;hbonds calculate;hbonds 0.09;select not selected; color translucent 0.9;set echo bottom centre;font echo 20 serif bolditalic;color echo green; echo "Base pair shift between A and B DNA"</script>	+
-	~~<text>Shift in Base Pair between A-B DNA</text>~~	+
-	</~~item~~>	+
	<item>		<item>
-	<script> moveto 1.0 0 0 1 0 ~~400.~~0 ~~0.0 0.~~0; ~~restore state ab~~;cartoon ~~OFF;spacefill ON~~; spacefill 90~~; wireframe ON~~; wireframe 50;~~select 9:a~~; ~~select not selected~~; color translucent 0.9; select ~~not selected~~; ~~centre selected~~;~~zoom 400~~;set echo bottom centre;font echo 20 serif ~~bolditalic~~;color echo green; echo "~~Change in Sugar Puckering from C2' endo in~~ B~~-DNA to C3' endo in A-~~DNA"; ~~animation~~ mode palindrome;~~animation ON~~;</script>	+	<script>moveto 1 0 0 1 0 180 0 0; spin off; select all; cartoon only; spacefill 90; wireframe 50; centre all; zoom 180;
-	<text>~~Change in Sugar Puckering from C2' endo~~ in B~~-DNA to C3' endo in A~~-DNA</text>	+	color translucent 0.9; select 9:A,4:B; hbonds calculate; hbonds 0.09; color opaque;
-	</item>	+	set echo bottom centre; font echo 18 serif bold; color echo green; echo "Base pair shift between A and B DNA";
		+	anim mode palindrome; anim on;</script>
		+	<text>Shift in base pair between A- and B- DNA</text>
		+	</item>
	<item>		<item>
-	<script>moveto 1.0 0 0 1 0 ~~150.~~0 0~~.0 0.0~~;~~restore state ab~~;spacefill ON; spacefill ~~400~~; ~~zoom 150~~; ~~cartoon OFF~~; ~~animation mode PALINDROME~~;~~animation ON~~; set echo bottom ~~centre~~;font echo 20 serif ~~bolditalic~~;color echo green; echo"~~Transition between~~ A-B DNA ~~spacefilling models~~"; </script>	+	<script>moveto 1 0 0 1 0 400 0 0; spin off; select all; spacefill only; spacefill 90; wireframe 50;
-	<text>~~Transition between~~ A-B DNA ~~spacefilling models~~</text>	+	color translucent 0.9; select 9:A; color opaque; centre selected; zoom 400;
-	</item>	+	set echo bottom left; font echo 18 serif bold; color echo green; echo "Change in sugar puckering \|from C2' endo in B-DNA to C3' endo in A-DNA";
-	</jmolRadioGroup>	+	anim mode palindrome; anim on;</script>
		+	<text>Change in sugar puckering from C2' endo in B-DNA to C3' endo in A-DNA</text>
		+	</item>
		+	</jmolRadioGroup>
	</jmol>		</jmol>

-	<!-- Restores Original State for Applet 4-->
-	<jmol>
-	<jmolButton>
-	<target>AtoB</target>
-	<script>moveto 1.0 0 0 1 0 100.0 0.0 0.0;load/wiki/images/9/9e/Morph_a-b.pdb;animation ON; animation mode PALINDROME; cartoon ON;save state ab</script>
-	<text>Restore Original State </text>
-	</jmolButton>
-	</jmol>

		+	Source of morphs: <ref>PMID: 10734184</ref>

-	~~<!-- Applet 5-->~~	+	[[Morphs\|Read more about morphing]]
-	~~<!--<jmol>~~	+
-	~~<jmolApplet>~~	+
-	~~<color>white</color>~~	+
-	~~<size>660</size>~~	+
-	~~<uploadedFileContents>Morph_test.pdb</uploadedFileContents>~~	+
-	~~<script>animation ON;animation mode PALINDROME;cartoon ON; save state ab_new</script>~~	+
-	~~</jmolApplet>~~	+
-	~~</jmol>~~	+
-		+
-	~~<jmol>~~	+
-	~~<jmolButton>~~	+
-	~~<target>6</target>~~	+
-	~~<script>moveto 1.0 0 0 1 0 100.0 0.0 0.0;load/wiki/images/5/50/Morph_test.pdb;animation ON; animation mode PALINDROME; cartoon ON;save state ab</script>~~	+
-	~~<text>Click here and activate options below </text>~~	+
-	~~</jmolButton>~~	+
-	~~</jmol>~~	+
-		+
-	~~<jmol>~~	+
-	~~<jmolRadioGroup>~~	+
-	~~<target>6</target>~~	+
-	~~<item>~~	+
-	<script> moveto 1.0 0 0 1 0 180.0 0.0 0.0;restore state ab;define temp selected; cartoon ON; spacefill 90; wireframe 50;zoom 180;select 9:a,4:b;hbonds calculate;hbonds 0.09; color translucent 0.9;set echo bottom centre;font echo 20 serif bold;color echo green; echo"Shift in Base Pair between A-B DNA"; select temp; animation mode palindrome;animation ON; </script>	+
-	~~<text>Shift in Base Pair between A-B DNA</text>~~	+
-	~~</item>~~	+
-	~~<item>~~	+
-	<script> moveto 1.0 0 0 1 0 400.0 0.0 0.0; restore state ab;define temp selected; cartoon OFF; spacefill 90; wireframe 50;select not 9:a; color translucent 0.9; centre selected;zoom 400;set echo bottom centre;font echo 20 serif bold;color echo green; echo"Change in Sugar Puckering from C2' endo in B-DNA to C3' endo in A-DNA"; select temp; refresh; animation mode palindrome;animation ON; </script>	+
-	~~<text>Change in Sugar Puckering from C2' endo in B-DNA to C3' endo in A-DNA</text>~~	+
-	~~</item>~~	+
-	~~<item>~~	+
-	<script>moveto 1.0 0 0 1 0 150.0 0.0 0.0;restore state ab;define temp selected; cartoon OFF;spacefill 400; zoom 150; set echo bottom centre;font echo 20 serif bold;color echo green; echo"Transition between A-B DNA spacefilling models"; select temp; animation mode palindrome;animation ON; </script>	+
-	~~<text>Transition between A-B DNA spacefilling models</text>~~	+
-	~~</item>~~	+
-	~~</jmolRadioGroup>~~	+
-	~~</jmol>~~	+
-		+
-	~~<jmol>~~	+
-	~~<jmolButton>~~	+
-	~~<target>6</target>~~	+
-	~~<script>moveto 1.0 0 0 1 0 100.0 0.0 0.0;load/wiki/images/5/50/Morph_test.pdb;animation ON; animation mode PALINDROME; cartoon ON;save state ab</script>~~	+
-	~~<text>Restore Original State </text>~~	+
-	~~</jmolButton>~~	+
-	~~</jmol>-->~~	+
-		+
-	~~''Morph Sources'' <ref>PMID: 10734184</ref> /~~ [[Morphs]]	+


Line 217:		Line 160:
	</jmol>-->		</jmol>-->

		+	</StructureSection>
	== References==		== References==
	<references/>		<references/>

Angel Herraez: new source to fix failures with animated model

Angel Herraez — Fri, 18 Dec 2020 19:05:50 GMT

new source to fix failures with animated model

←Older revision		Revision as of 19:05, 18 December 2020
Line 90:		Line 90:
	<!-- Loading and animating Initial Morph-->		<!-- Loading and animating Initial Morph-->

-	<StructureSection load='' name='AtoB' size='~~600~~' side='left' caption='Transition between A and B forms of DNA double helix' scene='43/438459/Spacefill_animated/3'>	+	<StructureSection load='' name='AtoB' size='550' side='left' caption='Transition between A and B forms of DNA double helix' scene='43/438459/Spacefill_animated/3'>

	This animated model displays the structural transformation between A and B forms of DNA.		This animated model displays the structural transformation between A and B forms of DNA.
		+
	<jmol>		<jmol>
	<jmolButton>		<jmolButton>
Line 99:		Line 100:
	<text>Sticks</text>		<text>Sticks</text>
	</jmolButton>		</jmolButton>
		+
	<jmolButton>		<jmolButton>
	<target>AtoB</target>		<target>AtoB</target>

Angel Herraez at 19:00, 18 December 2020

Angel Herraez — Fri, 18 Dec 2020 19:00:11 GMT

←Older revision		Revision as of 19:00, 18 December 2020
Line 93:		Line 93:

	This animated model displays the structural transformation between A and B forms of DNA.		This animated model displays the structural transformation between A and B forms of DNA.
-
-	<scene name='43/438459/Sticks_animated/1'>Sticks</scene> <scene name='43/438459/Spacefill_animated/3'>Spacefill</scene>
-
	<jmol>		<jmol>
	<jmolButton>		<jmolButton>
Line 101:		Line 98:
	<script>wireframe -0.2;</script>		<script>wireframe -0.2;</script>
	<text>Sticks</text>		<text>Sticks</text>
		+	</jmolButton>
		+	<jmolButton>
		+	<target>AtoB</target>
		+	<script>spacefill only;</script>
		+	<text>Spacefill</text>
	</jmolButton>		</jmolButton>
	</jmol>		</jmol>

Angel Herraez at 18:58, 18 December 2020

Angel Herraez — Fri, 18 Dec 2020 18:58:19 GMT

←Older revision		Revision as of 18:58, 18 December 2020
Line 88:		Line 88:
	<!-- Generation of smooth transition between animated morphs each of which depicts a different change-->		<!-- Generation of smooth transition between animated morphs each of which depicts a different change-->

-	<StructureSection load='' size='~~400~~' side='left' caption='Transition between A and B forms of DNA double helix' scene='43/438459/Spacefill_animated/3'>	+	<!-- Loading and animating Initial Morph-->
		+
		+	<StructureSection load='' name='AtoB' size='600' side='left' caption='Transition between A and B forms of DNA double helix' scene='43/438459/Spacefill_animated/3'>

	This animated model displays the structural transformation between A and B forms of DNA.		This animated model displays the structural transformation between A and B forms of DNA.
Line 94:		Line 96:
	<scene name='43/438459/Sticks_animated/1'>Sticks</scene> <scene name='43/438459/Spacefill_animated/3'>Spacefill</scene>		<scene name='43/438459/Sticks_animated/1'>Sticks</scene> <scene name='43/438459/Spacefill_animated/3'>Spacefill</scene>

-	</StructureSection>
-
-
-	<!-- Loading and animating Initial Morph-->
-	<!--
	<jmol>		<jmol>
-	<~~jmolApplet~~>	+	<jmolButton>
-	<~~name~~>AtoB</~~name~~>	+	<target>AtoB</target>
-	<~~size~~>~~660</size>~~	+	<script>wireframe -0.2;</script>
-	~~<color>white</color>~~	+	<text>Sticks</text>
-	~~<uploadedFileContents>morph_a~~-b.~~pdb~~</~~uploadedFileContents~~>	+	</jmolButton>
-	<~~script~~>~~animation ON; animation mode PALINDROME; cartoon ON; save state ab;~~</~~script> <!-- State is saved here when page loads but unable to restore state. It is being required to save state again and then restore works--~~>	+
-	</~~jmolApplet~~>	+
	</jmol>		</jmol>
-	-->	+
		+	</StructureSection>
		+

	<!--To activate the below options saving initial state again as restore state after above step is not working-->		<!--To activate the below options saving initial state again as restore state after above step is not working-->

Angel Herraez at 18:42, 18 December 2020

Angel Herraez — Fri, 18 Dec 2020 18:42:12 GMT

←Older revision		Revision as of 18:42, 18 December 2020
Line 97:		Line 97:


-	<!-- Loading and animating Initial Morph-->	+	<!-- Loading and animating Initial Morph-->
		+	<!--
	<jmol>		<jmol>
	<jmolApplet>		<jmolApplet>
Line 107:		Line 108:
	</jmolApplet>		</jmolApplet>
	</jmol>		</jmol>
		+	-->

	<!--To activate the below options saving initial state again as restore state after above step is not working-->		<!--To activate the below options saving initial state again as restore state after above step is not working-->

Angel Herraez: fix parts not working; the script applied to morph_a-b.pdb was not closed properly after "save state ab"

Angel Herraez — Fri, 18 Dec 2020 09:09:10 GMT

fix parts not working; the script applied to morph_a-b.pdb was not closed properly after "save state ab"

←Older revision		Revision as of 09:09, 18 December 2020
Line 104:		Line 104:
	<color>white</color>		<color>white</color>
	<uploadedFileContents>morph_a-b.pdb</uploadedFileContents>		<uploadedFileContents>morph_a-b.pdb</uploadedFileContents>
-	<script>animation ON; animation mode PALINDROME; cartoon ON; save state ab </script> <!-- State is saved here when page loads but unable to restore state. It is being required to save state again and then restore works-->	+	<script>animation ON; animation mode PALINDROME; cartoon ON; save state ab;</script> <!-- State is saved here when page loads but unable to restore state. It is being required to save state again and then restore works-->
	</jmolApplet>		</jmolApplet>
	</jmol>		</jmol>