Glutamate dehydrogenase 3D structures - Revision history

Joel L. Sussman at 07:16, 16 March 2023

Joel L. Sussman — Thu, 16 Mar 2023 07:16:47 GMT

←Older revision		Revision as of 07:16, 16 March 2023
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	**[[1hwy]] – bGLDH + NAD + 2-oxoglutarate <br />		**[[1hwy]] – bGLDH + NAD + 2-oxoglutarate <br />
-	**[[1hwz]] – bGLDH + NADP + GTP + Glu<br />
-	**[[3mw9]] - bGLDH + NAD + GTP + Glu<br />
	**[[3ete]], [[3etg]] - bGLDH + NADP + GTP + inhibitor + Glu<br />		**[[3ete]], [[3etg]] - bGLDH + NADP + GTP + inhibitor + Glu<br />
-	**[[3qmu]] - bGLDH + NADP + epicatechin-e-gallate<br />
	**[[8ar7]] – bGLDH1 + ADP + Leu<br />		**[[8ar7]] – bGLDH1 + ADP + Leu<br />
	**[[3jd3]], [[3jd4]] – bGLDH1 + GTP + NAD<br />		**[[3jd3]], [[3jd4]] – bGLDH1 + GTP + NAD<br />

Michal Harel at 10:19, 14 March 2023

Michal Harel — Tue, 14 Mar 2023 10:19:13 GMT

←Older revision		Revision as of 10:19, 14 March 2023
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	**[[3aoe]] - TtGLDH + Leu – ''Thermus thermophilus''<br />		**[[3aoe]] - TtGLDH + Leu – ''Thermus thermophilus''<br />
	**[[5gud]] – CgGLDH + NADP - ''Corynebacterium glutamicum'' <br />		**[[5gud]] – CgGLDH + NADP - ''Corynebacterium glutamicum'' <br />
-	**[[8hho]], [[8hiq]], [[8hiz]], [[8hj3, [[8hj9]] – TpGLDH + NADP – Cryo EM <br />	+	**[[8hho]], [[8hiq]], [[8hiz]], [[8hj3]], [[8hj9]] – TpGLDH + NADP – Cryo EM <br />
	**[[5xvv]] – AnGLDH + oxoglutarate <br />		**[[5xvv]] – AnGLDH + oxoglutarate <br />
	**[[7mfm]], [[7mft]] – BsGLDH + glutamate synthase – Cryo EM <br />		**[[7mfm]], [[7mft]] – BsGLDH + glutamate synthase – Cryo EM <br />

Michal Harel at 10:18, 14 March 2023

Michal Harel — Tue, 14 Mar 2023 10:18:39 GMT

←Older revision		Revision as of 10:18, 14 March 2023
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	**[[1bgv]] – CsGLDH + Glu<br />		**[[1bgv]] – CsGLDH + Glu<br />
	**[[1v9l]] - GLDH + NAD – ''Pyrobaculum islandicum''<br />		**[[1v9l]] - GLDH + NAD – ''Pyrobaculum islandicum''<br />
-	**[[3aoe - TtGLDH + Leu – ''Thermus thermophilus''<br />	+	**[[3aoe]] - TtGLDH + Leu – ''Thermus thermophilus''<br />
	**[[5gud]] – CgGLDH + NADP - ''Corynebacterium glutamicum'' <br />		**[[5gud]] – CgGLDH + NADP - ''Corynebacterium glutamicum'' <br />
	**[[8hho]], [[8hiq]], [[8hiz]], [[8hj3, [[8hj9]] – TpGLDH + NADP – Cryo EM <br />		**[[8hho]], [[8hiq]], [[8hiz]], [[8hj3, [[8hj9]] – TpGLDH + NADP – Cryo EM <br />

Michal Harel at 10:17, 14 March 2023

Michal Harel — Tue, 14 Mar 2023 10:17:54 GMT

←Older revision		Revision as of 10:17, 14 March 2023
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	*Glutamate dehydrogenase binary complex		*Glutamate dehydrogenase binary complex

-	**[[~~nqt~~]], [[6dhk]], [[8ar8]] - bGLDH + ADP<br />	+	**[[1nqt]], [[6dhk]], [[8ar8]] - bGLDH + ADP<br />
	**[[3jd0]] – bGLDH1 + GTP<br />		**[[3jd0]] – bGLDH1 + GTP<br />
	**[[3etd]] – bGLDH1 + drug<br />		**[[3etd]] – bGLDH1 + drug<br />

Michal Harel at 10:16, 14 March 2023

Michal Harel — Tue, 14 Mar 2023 10:16:59 GMT

←Older revision		Revision as of 10:16, 14 March 2023
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	**[[6g2u]] – hGLDH2<br />		**[[6g2u]] – hGLDH2<br />
	**[[1nr7]] – bGLDH – bovine<br />		**[[1nr7]] – bGLDH – bovine<br />
-	**[[6dhn]], [[6dhl~~]], [[3jcg~~]] – bGLDH1<br />	+	**[[6dhn]], [[6dhl]] – bGLDH1<br />
-	**[[5k12]] – bGLDH1 – Cryo-EM<br />	+	**[[3jcz]], [[5k12]], [[7vda]], [[8ew0]] – bGLDH1 – Cryo-EM<br />
	**[[6yeh]] – AtGLDH1 – ''Arabidopsis thaliana''<br />		**[[6yeh]] – AtGLDH1 – ''Arabidopsis thaliana''<br />
	**[[1gtm]] – GLDH – ''Pyrococcus furiosus''<br />		**[[1gtm]] – GLDH – ''Pyrococcus furiosus''<br />
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	**[[2bma]] – PfGLDH – ''Plasmodium falciparum''<br />		**[[2bma]] – PfGLDH – ''Plasmodium falciparum''<br />
	**[[3r3j]] - PfGLDH (mutant)<br />		**[[3r3j]] - PfGLDH (mutant)<br />
-	**[[3k8z]], [[3k92]] – ~~GLDH~~ (mutant) – ''Bacillus subtilis''<br />	+	**[[3k8z]], [[3k92]] – BsGLDH (mutant) – ''Bacillus subtilis''<br />
	**[[2yfq]] - GLDH – ''Peptoniphilus asaccharolyticus''<br />		**[[2yfq]] - GLDH – ''Peptoniphilus asaccharolyticus''<br />
	**[[3sbo]], [[4bht]], [[4fcc]] - EcGLDH – ''Escherichia coli''<br />		**[[3sbo]], [[4bht]], [[4fcc]] - EcGLDH – ''Escherichia coli''<br />
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	**[[7f77]] – CaGLDH3 – ''Candida albican''<br />		**[[7f77]] – CaGLDH3 – ''Candida albican''<br />

-	*Glutamate dehydrogenase complex	+	*Glutamate dehydrogenase binary complex

-	**[[~~1hwy]] – bGLDH + NAD + 2-oxoglutarate <br />~~	+	**[[nqt]], [[6dhk]], [[8ar8]] - bGLDH + ADP<br />
-	**[[6dhd]] – bGLDH + NADP + GTP + glutamate <br />	+
-	**[[6dhm]] - bGLDH + NAD + GTP + glutamate <br />	+
-	**[[3ete]], [[~~3etg]] - bGLDH + NADP + GTP + inhibitor + glutamate <br />~~	+
-	**[[1nqt]], [[~~6dhk~~]] - bGLDH + ADP~~<br />~~	+
-	**[[6dhq]] - bGLDH + NADP + epicatechin-3-gallate<br />	+
	**[[3jd0]] – bGLDH1 + GTP<br />		**[[3jd0]] – bGLDH1 + GTP<br />
		+	**[[3etd]] – bGLDH1 + drug<br />
	**[[3jd1]], [[3jd2]] – bGLDH1 + NAD<br />		**[[3jd1]], [[3jd2]] – bGLDH1 + NAD<br />
-	**[[3jd3]], [[3jd4]] – bGLDH1 + GTP + NAD<br />
-	**[[6dhm]], [[6dhq]] – bGLDH1 + GTP + NADP + Glu<br />
-	**[[6dhd]], [[6dhn]] – bGLDH1 + GTP + NAD + Glu<br />
	**[[6dhl]] – bGLDH1 + epicatechin gallate<br />		**[[6dhl]] – bGLDH1 + epicatechin gallate<br />
	**[[6yei]] – AtGLDH1 + NAD <br />		**[[6yei]] – AtGLDH1 + NAD <br />
-	**[[1bgv]] – CsGLDH + ~~glutamate~~ <br />	+	**[[1bgv]] – CsGLDH + Glu<br />
	**[[1v9l]] - GLDH + NAD – ''Pyrobaculum islandicum''<br />		**[[1v9l]] - GLDH + NAD – ''Pyrobaculum islandicum''<br />
-	**[[3aoe]] - TtGLDH + ~~leucine~~ – ''Thermus thermophilus''<br />	+	**[[3aoe - TtGLDH + Leu – ''Thermus thermophilus''<br />
-	**[[~~3aog]] - TtGLDH + NH4 + glutamate <br />~~	+	**[[5gud]] – CgGLDH + NADP - ''Corynebacterium glutamicum'' <br />
-	**[[4fhn]] – ~~EcGLDH + Nup37 + Nup120<br />~~	+	**[[8hho]], [[8hiq]], [[8hiz]], [[8hj3, [[8hj9]] – TpGLDH + NADP – Cryo EM <br />
-	**[[5ijz]] - CgGLDH + ~~NAD + 2~~-~~oxoglutarate –~~ ''Corynebacterium glutamicum''<br />	+
-	**[[~~5gud~~]] – ~~CgGLDH~~ + NADP <br />	+
	**[[5xvv]] – AnGLDH + oxoglutarate <br />		**[[5xvv]] – AnGLDH + oxoglutarate <br />
		+	**[[7mfm]], [[7mft]] – BsGLDH + glutamate synthase – Cryo EM <br />
		+
		+	*Glutamate dehydrogenase higher complex
		+
		+	**[[1hwy]] – bGLDH + NAD + 2-oxoglutarate <br />
		+	**[[1hwz]] – bGLDH + NADP + GTP + Glu<br />
		+	**[[3mw9]] - bGLDH + NAD + GTP + Glu<br />
		+	**[[3ete]], [[3etg]] - bGLDH + NADP + GTP + inhibitor + Glu<br />
		+	**[[3qmu]] - bGLDH + NADP + epicatechin-e-gallate<br />
		+	**[[8ar7]] – bGLDH1 + ADP + Leu<br />
		+	**[[3jd3]], [[3jd4]] – bGLDH1 + GTP + NAD<br />
		+	**[[6dhm]], [[6dhq]] – bGLDH1 + GTP + NADP + Glu<br />
		+	**[[6dhd]], [[6dhn]] – bGLDH1 + GTP + NAD + Glu<br />
		+	**[[3aog]] - TtGLDH + NH4 + Glu<br />
		+	**[[4fhn]] – EcGLDH + Nup37 + Nup120<br />
		+	**[[5ijz]] - CgGLDH + NAD + 2-oxoglutarate <br />
	**[[5xvx]] – AnGLDH + NADP + oxoglutarate <br />		**[[5xvx]] – AnGLDH + NADP + oxoglutarate <br />
	**[[5xw0]] – AnGLDH + NADP + isophthalate <br />		**[[5xw0]] – AnGLDH + NADP + isophthalate <br />
	**[[5xwc]] – AnGLDH + NADP + iminoglutarate + amino-hydroxyglutarate<br />		**[[5xwc]] – AnGLDH + NADP + iminoglutarate + amino-hydroxyglutarate<br />
	**[[7f79]] – CaGLDH + NADP + ketoglutarate <br />		**[[7f79]] – CaGLDH + NADP + ketoglutarate <br />
		+	**[[7ecs]] – AtGLDH + NADP + malonate – ''Aspergillus terreus''<br />
		+	**[[7ect]] – AtGLDH + NADP + tartrate <br />
		+	**[[7ecr]] – AtGLDH + ADP-ribose + succinate <br />
		+
	}}		}}

	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel at 09:29, 8 August 2021

Michal Harel — Sun, 08 Aug 2021 09:29:28 GMT

←Older revision		Revision as of 09:29, 8 August 2021
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	**[[4xgi]] – GLDH – ''Burkholderia thailandensis''<br />		**[[4xgi]] – GLDH – ''Burkholderia thailandensis''<br />
	**[[5xvi]] – AnGLDH – ''Aspergillus niger''<br />		**[[5xvi]] – AnGLDH – ''Aspergillus niger''<br />
		+	**[[7jsr]] – MsGLDH – ''Mycolicibacterium smegmatis'' <br />
		+	**[[7a1d]] – MsGLDH - Cryo-EM<br />
		+	**[[7f77]] – CaGLDH3 – ''Candida albican''<br />

	*Glutamate dehydrogenase complex		*Glutamate dehydrogenase complex
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	**[[3jd1]], [[3jd2]] – bGLDH1 + NAD<br />		**[[3jd1]], [[3jd2]] – bGLDH1 + NAD<br />
	**[[3jd3]], [[3jd4]] – bGLDH1 + GTP + NAD<br />		**[[3jd3]], [[3jd4]] – bGLDH1 + GTP + NAD<br />
		+	**[[6dhm]], [[6dhq]] – bGLDH1 + GTP + NADP + Glu<br />
		+	**[[6dhd]], [[6dhn]] – bGLDH1 + GTP + NAD + Glu<br />
		+	**[[6dhl]] – bGLDH1 + epicatechin gallate<br />
	**[[6yei]] – AtGLDH1 + NAD <br />		**[[6yei]] – AtGLDH1 + NAD <br />
	**[[1bgv]] – CsGLDH + glutamate <br />		**[[1bgv]] – CsGLDH + glutamate <br />
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	**[[5xw0]] – AnGLDH + NADP + isophthalate <br />		**[[5xw0]] – AnGLDH + NADP + isophthalate <br />
	**[[5xwc]] – AnGLDH + NADP + iminoglutarate + amino-hydroxyglutarate<br />		**[[5xwc]] – AnGLDH + NADP + iminoglutarate + amino-hydroxyglutarate<br />
		+	**[[7f79]] – CaGLDH + NADP + ketoglutarate <br />
	}}		}}

	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel at 07:08, 4 August 2020

Michal Harel — Tue, 04 Aug 2020 07:08:48 GMT

Michal Harel at 08:40, 11 July 2019

Michal Harel — Thu, 11 Jul 2019 08:40:27 GMT

←Older revision		Revision as of 08:40, 11 July 2019
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	**[[3r3j]] - PfGLDH (mutant)<br />		**[[3r3j]] - PfGLDH (mutant)<br />
	**[[3k8z]], [[3k92]] – GLDH (mutant) – ''Bacillus subtilis''<br />		**[[3k8z]], [[3k92]] – GLDH (mutant) – ''Bacillus subtilis''<br />
-	**[[2yfq]] - ~~bGLDH~~ – ''Peptoniphilus asaccharolyticus''<br />	+	**[[2yfq]] - GLDH – ''Peptoniphilus asaccharolyticus''<br />
	**[[3sbo]], [[4bht]], [[4fcc]] - EcGLDH – ''Escherichia coli''<br />		**[[3sbo]], [[4bht]], [[4fcc]] - EcGLDH – ''Escherichia coli''<br />
	**[[2yfh]] – EcGLDH/CsGLDH<br />		**[[2yfh]] – EcGLDH/CsGLDH<br />

Michal Harel: New page: ==3D structures of glutamate dehydrogenase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Glutamate dehydrogena...

Michal Harel — Thu, 11 Jul 2019 08:40:09 GMT

New page: ==3D structures of glutamate dehydrogenase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Glutamate dehydrogena...

New page

==3D structures of glutamate dehydrogenase==

Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|

*Glutamate dehydrogenase

**[[1l1f]] – hGLDH1 – human 
**[[1nr1]], [[6dqg]] – hGLDH1 (mutant) 
**[[6g2u]] – hGLDH2 
**[[1nr7]] – bGLDH – bovine 
**[[6dhn]], [[6dhl]], [[3jcg]] – bGLDH1 
**[[5k12]] – bGLDH1 – Cryo-EM 
**[[1gtm]] – GLDH – ''Pyrococcus furiosus'' 
**[[1hrd]] – CsGLDH – ''Clostridium symbiosum'' 
**[[1aup]], [[1k89]] – CsGLDH (mutant) 
**[[1bvu]] – GLDH – ''Thermococcus litoralis'' 
**[[1euz]] - GLDH – ''Thermococcus profundus'' 
**[[1b26]] – TmGLDH – ''Thermotoga maritima'' 
**[[1b3b]], [[2tmg]] - TmGLDH (mutant) 
**[[2bma]] – PfGLDH – ''Plasmodium falciparum'' 
**[[3r3j]] - PfGLDH (mutant) 
**[[3k8z]], [[3k92]] – GLDH (mutant) – ''Bacillus subtilis'' 
**[[2yfq]] - bGLDH – ''Peptoniphilus asaccharolyticus'' 
**[[3sbo]], [[4bht]], [[4fcc]] - EcGLDH – ''Escherichia coli'' 
**[[2yfh]] – EcGLDH/CsGLDH 
**[[4xgi]] – GLDH – ''Burkholderia thailandensis'' 
**[[5xvi]] – AnGLDH – ''Aspergillus niger'' 

*Glutamate dehydrogenase complex

**[[1hwy]] – bGLDH + NAD + 2-oxoglutarate 
**[[6dhd]] – bGLDH + NADP + GTP + glutamate 
**[[6dhm]] - bGLDH + NAD + GTP + glutamate 
**[[3ete]], [[3etg]] - bGLDH + NADP + GTP + inhibitor + glutamate 
**[[1nqt]], [[6dhk]] - bGLDH + ADP 
**[[6dhq]] - bGLDH + NADP + epicatechin-3-gallate 
**[[3jd0]] – bGLDH1 + GTP 
**[[3jd1]], [[3jd2]] – bGLDH1 + NAD 
**[[3jd3]], [[3jd4]] – bGLDH1 + GTP + NAD 
**[[1bgv]] – CsGLDH + glutamate 
**[[1v9l]] - GLDH + NAD – ''Pyrobaculum islandicum'' 
**[[3aoe]] - TtGLDH + leucine – ''Thermus thermophilus'' 
**[[3aog]] - TtGLDH + NH4 + glutamate 
**[[4fhn]] – EcGLDH + Nup37 + Nup120 
**[[5ijz]] - CgGLDH + NAD + 2-oxoglutarate – ''Corynebacterium glutamicum'' 
**[[5gud]] – CgGLDH + NADP 
**[[5xvv]] – AnGLDH + oxoglutarate 
**[[5xvx]] – AnGLDH + NADP + oxoglutarate 
**[[5xw0]] – AnGLDH + NADP + isophthalate 
**[[5xwc]] – AnGLDH + NADP + iminoglutarate + amino-hydroxyglutarate 
}}

[[Category:Topic Page]]

←Older revision		Revision as of 07:08, 4 August 2020
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	**[[6dhn]], [[6dhl]], [[3jcg]] – bGLDH1<br />		**[[6dhn]], [[6dhl]], [[3jcg]] – bGLDH1<br />
	**[[5k12]] – bGLDH1 – Cryo-EM<br />		**[[5k12]] – bGLDH1 – Cryo-EM<br />
		+	**[[6yeh]] – AtGLDH1 – ''Arabidopsis thaliana''<br />
	**[[1gtm]] – GLDH – ''Pyrococcus furiosus''<br />		**[[1gtm]] – GLDH – ''Pyrococcus furiosus''<br />
	**[[1hrd]] – CsGLDH – ''Clostridium symbiosum''<br />		**[[1hrd]] – CsGLDH – ''Clostridium symbiosum''<br />
	**[[1aup]], [[1k89]] – CsGLDH (mutant)<br />		**[[1aup]], [[1k89]] – CsGLDH (mutant)<br />
	**[[1bvu]] – GLDH – ''Thermococcus litoralis''<br />		**[[1bvu]] – GLDH – ''Thermococcus litoralis''<br />
-	**[[1euz]] - ~~GLDH~~ – ''Thermococcus profundus''<br />	+	**[[1euz]] - TpGLDH – ''Thermococcus profundus''<br />
		+	**[[6jna]], [[6jnc]], [[6jn9]], [[6jnd]] – TpGLDH – Cryo EM<br />
	**[[1b26]] – TmGLDH – ''Thermotoga maritima''<br />		**[[1b26]] – TmGLDH – ''Thermotoga maritima''<br />
	**[[1b3b]], [[2tmg]] - TmGLDH (mutant)<br />		**[[1b3b]], [[2tmg]] - TmGLDH (mutant)<br />
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	**[[3jd1]], [[3jd2]] – bGLDH1 + NAD<br />		**[[3jd1]], [[3jd2]] – bGLDH1 + NAD<br />
	**[[3jd3]], [[3jd4]] – bGLDH1 + GTP + NAD<br />		**[[3jd3]], [[3jd4]] – bGLDH1 + GTP + NAD<br />
		+	**[[6yei]] – AtGLDH1 + NAD <br />
	**[[1bgv]] – CsGLDH + glutamate <br />		**[[1bgv]] – CsGLDH + glutamate <br />
	**[[1v9l]] - GLDH + NAD – ''Pyrobaculum islandicum''<br />		**[[1v9l]] - GLDH + NAD – ''Pyrobaculum islandicum''<br />