Methyl CpG binding protein 3D structures - Revision history

Michal Harel at 09:41, 28 June 2023

Michal Harel — Wed, 28 Jun 2023 09:41:43 GMT

←Older revision		Revision as of 09:41, 28 June 2023
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	**[[3c2i]] – hMCP2 MBD domain (mutant) + DNA<br />		**[[3c2i]] – hMCP2 MBD domain (mutant) + DNA<br />
	**[[6cnp]], [[6cnq]], [[6c2f]], [[6c1y]], [[6c1v]], [[6c1u]], [[6c1t]], [[6c1a]], [[7mwk]], [[7mwm]], [[7ray]] – hMCP2 residues 143-220 + DNA<br />		**[[6cnp]], [[6cnq]], [[6c2f]], [[6c1y]], [[6c1v]], [[6c1u]], [[6c1t]], [[6c1a]], [[7mwk]], [[7mwm]], [[7ray]] – hMCP2 residues 143-220 + DNA<br />
		+	**[[8ajr]], [[8alq]] – hMCP2 residues 101-193 - NMR<br />
	**[[2ky8]] – cMBD2 MBD domain + DNA containing cytidine and uridine derivatives - NMR - chicken<br />		**[[2ky8]] – cMBD2 MBD domain + DNA containing cytidine and uridine derivatives - NMR - chicken<br />
	**[[1ub1]] – cMCP2 MBD domain – NMR<br />		**[[1ub1]] – cMCP2 MBD domain – NMR<br />
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	**[[3iho]], [[4e9e]] – hMBD4 glycosylate domain<br />		**[[3iho]], [[4e9e]] – hMBD4 glycosylate domain<br />
	**[[4e9g]] – hMBD4 glycosylate domain + DNA <br />		**[[4e9g]] – hMBD4 glycosylate domain + DNA <br />
-	**[[4dk9]], [[4e9f]] – hMBD4 glycosylate domain + DNA containing abasic dideoxyribose<br />	+	**[[4dk9]], [[4e9f]], [[7kz1]], [[7kzg]] – hMBD4 glycosylate domain + DNA containing abasic dideoxyribose<br />
		+	**[[7kz0]] – hMBD4 glycosylate domain + DNA containing pseudo-uridine<br />
	**[[4e9h]], [[4ea4]], [[4ea5]] – hMBD4 glycosylate domain (mutant) + DNA containing hydroxymethyluracil<br />		**[[4e9h]], [[4ea4]], [[4ea5]] – hMBD4 glycosylate domain (mutant) + DNA containing hydroxymethyluracil<br />
	**[[4lg7]], [[2moe]] – hMBD4 MBD + DNA containing cytidine derivative<br />		**[[4lg7]], [[2moe]] – hMBD4 MBD + DNA containing cytidine derivative<br />
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	**[[4ew0]] – mMBD4 glycosylate domain (mutant) + DNA containing hydroxymethyluracil<br />		**[[4ew0]] – mMBD4 glycosylate domain (mutant) + DNA containing hydroxymethyluracil<br />
	**[[3vxv]], [[3vxx]], [[3vyb]], [[3vyq]] – mMBD4 MBD + DNA containing cytidine derivative<br />		**[[3vxv]], [[3vxx]], [[3vyb]], [[3vyq]] – mMBD4 MBD + DNA containing cytidine derivative<br />
		+
		+	*Methyl CpG binding protein 5 (MBD5)
		+
		+	**[[7feo]] – AtMBD5 MBD domain – ''Arabidopsis thaliana'' - NMR<br />
		+
		+	*Methyl CpG binding protein 6 (MBD6)
		+
		+	**[[7fef]] – AtMBD6 101-193 <br />

	*Methyl CpG binding protein 8 (MBD8)		*Methyl CpG binding protein 8 (MBD8)

-	**[[7d8k]] – AtMBD8 MBD domain ~~– ''Arabidopsis thaliana''~~ - NMR<br />	+	**[[7d8k]] – AtMBD8 MBD domain - NMR<br />

	*Methyl CpG binding protein 11 (MBD11)		*Methyl CpG binding protein 11 (MBD11)

Michal Harel at 09:20, 2 November 2021

Michal Harel — Tue, 02 Nov 2021 09:20:15 GMT

Michal Harel at 07:08, 7 September 2020

Michal Harel — Mon, 07 Sep 2020 07:08:38 GMT

←Older revision		Revision as of 07:08, 7 September 2020
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	**[[6cev]], [[6ceu]], [[6ccg]], [[6cc8]] – hMBD3 MBD domain + DNA <br />		**[[6cev]], [[6ceu]], [[6ccg]], [[6cc8]] – hMBD3 MBD domain + DNA <br />

-	*Methyl CpG binding protein 4 (MBD4)	+	*Methyl CpG binding protein 4 (MBD4)); Domains – MBD 83-149; glycosylate 426-580

	**[[3iho]], [[4e9e]] – hMBD4 glycosylate domain<br />		**[[3iho]], [[4e9e]] – hMBD4 glycosylate domain<br />

Michal Harel: New page: ==3D structures of methyl CpG binding protein== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Methyl CpG binding...

Michal Harel — Wed, 30 Oct 2019 09:45:28 GMT

New page: ==3D structures of methyl CpG binding protein== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *Methyl CpG binding...

New page

==3D structures of methyl CpG binding protein==

Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|

*Methyl CpG binding protein 1 (MBD1)Domains - MBD 1-77; CXXC1 – 167-222; zinc finger 330-388;

**[[6d1t]] – hMBD1 MBD domain + DNA – human 
**[[1ig4]] – hMBD1 MBD domain + DNA – NMR 
**[[1d9n]] - hMBD1 MBD domain – NMR 
**[[4d4w]] - hMBD1 CXXC1 domain – NMR 
**[[5w9q]] – hMBD1 zinc finger domain + DNA 

*Methyl CpG binding protein 2 (MBD2)); Domains - MBD 77-167; coiled-coil 137-178;

**[[2l2l]] - hMBD2 coiled-coil domain + transcriptional repressor p66-α coiled-coil domain – NMR 
**[[6ogj]], [[6ogk]] – hMBD2 MBD + DNA 
**[[5bt2]] – hMBD2 MBD + methylated DNA 
**[[1qk9]] - hMCP2 MBD domain – NMR 
**[[3c2i]] – hMCP2 MBD domain (mutant) + DNA 
**[[6cnp]], [[6cnq]], [[6c2f]], [[6c1y]], [[6c1v]], [[6c1u]], [[6c1t]], [[6c1a]] – hMCP2 residues 143-220 + DNA 
**[[2ky8]] – cMBD2 MBD domain + DNA containing cytidine and uridine derivatives - NMR - chicken 
**[[1ub1]] – cMCP2 MBD domain – NMR 

*Methyl CpG binding protein 3 (MBD3)); Domains - MBD 1-77

**[[2mb7]] – hMBD3 MBD domain – NMR 
**[[6cev]], [[6ceu]], [[6ccg]], [[6cc8]] – hMBD3 MBD domain + DNA 

*Methyl CpG binding protein 4 (MBD4)

**[[3iho]], [[4e9e]] – hMBD4 glycosylate domain 
**[[4e9g]] – hMBD4 glycosylate domain + DNA 
**[[4dk9]], [[4e9f]] – hMBD4 glycosylate domain + DNA containing abasic dideoxyribose 
**[[4e9h]], [[4ea4]], [[4ea5]] – hMBD4 glycosylate domain (mutant) + DNA containing hydroxymethyluracil 
**[[4lg7]], [[2moe]] – hMBD4 MBD + DNA containing cytidine derivative 
**[[5chz]] – hMBD4 MBD + DNA containing mismatch 
**[[4ofa]], [[4ofe]], [[4ofh]] – hMBD4 MBD (mutant) + DNA containing mismatch 
**[[1ngn]] - mMBD4 glycosylate domain – mouse 
**[[4ew4]] – mMBD4 glycosylate domain + DNA containing abasic dideoxyribose 
**[[4evv]] – mMBD4 glycosylate domain + DNA containing mismatch 
**[[4ew0]] – mMBD4 glycosylate domain (mutant) + DNA containing hydroxymethyluracil 
**[[3vxv]], [[3vxx]], [[3vyb]], [[3vyq]] – mMBD4 MBD + DNA containing cytidine derivative 

Methyl CpG binding protein 11 (MBD11)

**[[6acv]] – MBD11 MBD domain – ''Arabidopsis thaliana'' - NMR 
}}

[[Category:Topic Page]]

←Older revision		Revision as of 09:20, 2 November 2021
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	**[[5w9q]] – hMBD1 zinc finger domain + DNA <br />		**[[5w9q]] – hMBD1 zinc finger domain + DNA <br />

-	*Methyl CpG binding protein 2 (MBD2)); Domains - MBD 77-167; coiled-coil 137-178;	+	*Methyl CpG binding protein 2 (MBD2) or MeCP2; Domains - MBD 77-167; coiled-coil 137-178;

		+	**[[7ao8]], [[7ao9]], [[7aoa]] – hMBD2 + MTA1 + HDAC1 + RBBP4 – Cryo EM<br />
	**[[2l2l]] - hMBD2 coiled-coil domain + transcriptional repressor p66-α coiled-coil domain – NMR<br />		**[[2l2l]] - hMBD2 coiled-coil domain + transcriptional repressor p66-α coiled-coil domain – NMR<br />
-	**[[6ogj]], [[6ogk]] – hMBD2 MBD + DNA <br />	+	**[[6ogj]], [[6ogk]], [[6yww]] – hMBD2 MBD + DNA <br />
	**[[5bt2]] – hMBD2 MBD + methylated DNA <br />		**[[5bt2]] – hMBD2 MBD + methylated DNA <br />
	**[[1qk9]] - hMCP2 MBD domain – NMR<br />		**[[1qk9]] - hMCP2 MBD domain – NMR<br />
	**[[3c2i]] – hMCP2 MBD domain (mutant) + DNA<br />		**[[3c2i]] – hMCP2 MBD domain (mutant) + DNA<br />
-	**[[6cnp]], [[6cnq]], [[6c2f]], [[6c1y]], [[6c1v]], [[6c1u]], [[6c1t]], [[6c1a]] – hMCP2 residues 143-220 + DNA<br />	+	**[[6cnp]], [[6cnq]], [[6c2f]], [[6c1y]], [[6c1v]], [[6c1u]], [[6c1t]], [[6c1a]], [[7mwk]], [[7mwm]], [[7ray]] – hMCP2 residues 143-220 + DNA<br />
	**[[2ky8]] – cMBD2 MBD domain + DNA containing cytidine and uridine derivatives - NMR - chicken<br />		**[[2ky8]] – cMBD2 MBD domain + DNA containing cytidine and uridine derivatives - NMR - chicken<br />
	**[[1ub1]] – cMCP2 MBD domain – NMR<br />		**[[1ub1]] – cMCP2 MBD domain – NMR<br />
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	**[[4e9h]], [[4ea4]], [[4ea5]] – hMBD4 glycosylate domain (mutant) + DNA containing hydroxymethyluracil<br />		**[[4e9h]], [[4ea4]], [[4ea5]] – hMBD4 glycosylate domain (mutant) + DNA containing hydroxymethyluracil<br />
	**[[4lg7]], [[2moe]] – hMBD4 MBD + DNA containing cytidine derivative<br />		**[[4lg7]], [[2moe]] – hMBD4 MBD + DNA containing cytidine derivative<br />
-	**[[5chz]] – hMBD4 MBD + DNA containing mismatch<br />	+	**[[5chz]], [[6vjw]] – hMBD4 MBD + DNA containing mismatch<br />
	**[[4ofa]], [[4ofe]], [[4ofh]] – hMBD4 MBD (mutant) + DNA containing mismatch<br />		**[[4ofa]], [[4ofe]], [[4ofh]] – hMBD4 MBD (mutant) + DNA containing mismatch<br />
	**[[1ngn]] - mMBD4 glycosylate domain – mouse<br />		**[[1ngn]] - mMBD4 glycosylate domain – mouse<br />
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	**[[3vxv]], [[3vxx]], [[3vyb]], [[3vyq]] – mMBD4 MBD + DNA containing cytidine derivative<br />		**[[3vxv]], [[3vxx]], [[3vyb]], [[3vyq]] – mMBD4 MBD + DNA containing cytidine derivative<br />

-	Methyl CpG binding protein 11 (~~MBD11~~)	+	*Methyl CpG binding protein 8 (MBD8)

-	**[[~~6acv~~]] – ~~MBD11~~ MBD domain – ''Arabidopsis thaliana'' - NMR<br />	+	**[[7d8k]] – AtMBD8 MBD domain – ''Arabidopsis thaliana'' - NMR<br />
		+
		+	*Methyl CpG binding protein 11 (MBD11)
		+
		+	**[[6acv]] – AtMBD11 MBD domain - NMR<br />
	}}		}}

	[[Category:Topic Page]]		[[Category:Topic Page]]