Proteopedia:DIY:Templates - Revision history

Karsten Theis at 13:20, 16 February 2021

Karsten Theis — Tue, 16 Feb 2021 13:20:59 GMT

←Older revision		Revision as of 13:20, 16 February 2021
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	'''Templates as a tool'''		'''Templates as a tool'''

-	Existing templates can be used in Proteopedia pages to call commonly used wiki-text or Jmol code. A good description of how to use them, with color templates, can be found [[DRuMS#The DRuMS Color Schemes\|here]]. Additional templates can be made.	+	Existing templates can be used in Proteopedia pages to call commonly used wiki-text or Jmol code. A good description of how to use them, with color templates, can be found [[DRuMS#The DRuMS Color Schemes\|here]]. Additional templates can be made, and you find a list of existing templates under [https://proteopedia.org/wiki/index.php?title=Special%3AAllpages&from=Abstract&namespace=10 All Pages].

	This page is meant to be a resource for finding and using templates.		This page is meant to be a resource for finding and using templates.

Wayne Decatur at 21:43, 29 December 2020

Wayne Decatur — Tue, 29 Dec 2020 21:43:43 GMT

←Older revision		Revision as of 21:43, 29 December 2020
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	* See [[DRuMS#The DRuMS Color Schemes\|DRuMS color template]].		* See [[DRuMS#The DRuMS Color Schemes\|DRuMS color template]].

-	* See [[Help:Coloring_text#Color_Scheme_Templates]].	+	* See [[Help:Coloring_text#Color_Scheme_Templates\|Color Scheme Templates]].

	Additional examples not listed there:		Additional examples not listed there:
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	* [[DRuMS#The DRuMS Color Schemes\|DRuMS color templates]]		* [[DRuMS#The DRuMS Color Schemes\|DRuMS color templates]]
	* [[Help:Color_Keys]]		* [[Help:Color_Keys]]
		+	* [[Help:Coloring_text]]

Wayne Decatur: add link to coloring text templates

Wayne Decatur — Tue, 29 Dec 2020 21:42:27 GMT

add link to coloring text templates

←Older revision		Revision as of 21:42, 29 December 2020
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	* See [[DRuMS#The DRuMS Color Schemes\|DRuMS color template]].		* See [[DRuMS#The DRuMS Color Schemes\|DRuMS color template]].
		+
		+	* See [[Help:Coloring_text#Color_Scheme_Templates]].

	Additional examples not listed there:		Additional examples not listed there:

Wayne Decatur: fix bracket typo

Wayne Decatur — Tue, 29 Dec 2020 21:39:00 GMT

fix bracket typo

←Older revision		Revision as of 21:39, 29 December 2020
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	* See [[DRuMS#The DRuMS Color Schemes\|DRuMS color template]].		* See [[DRuMS#The DRuMS Color Schemes\|DRuMS color template]].

-	Additional ~~ones~~ not listed there:	+	Additional examples not listed there:

	{{Button ColorLeucine}}		{{Button ColorLeucine}}
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	{{Button HeteroCPKColorScheme}} (No-demo made yet.)		{{Button HeteroCPKColorScheme}} (No-demo made yet.)

-	{{[User:Wayne Decatur/Template ColorKey Composition lcprotein\|Template ColorKey Composition protein}} - `protein` darkened for light backgrounds	+	{{User:Wayne Decatur/Template ColorKey Composition lcprotein\|Template ColorKey Composition protein}} - `protein` darkened for light backgrounds

	</StructureSection>		</StructureSection>

Angel Herraez: merging templates from other pages

Angel Herraez — Wed, 16 Aug 2017 11:13:42 GMT

merging templates from other pages

←Older revision		Revision as of 11:13, 16 August 2017
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	This page is meant to be a resource for finding and using templates.		This page is meant to be a resource for finding and using templates.

		+	<StructureSection load='' size='300' side='right' caption='Surface to test templates' scene='60/607777/Surf_test/1' pspeed='8'>

		+	==Surface display==

-	==Surface ~~fade templates and buttons~~==	+	===Surface toggles===
-	~~<Structure load='Insert PDB code or filename here' size='350' frame='true' align='right' caption='Surface Fade Demo Display' scene='60/607777/Surf_test/1' pspeed~~=~~'8' />~~	+

		+	These 3 controls are inserted using templates:

-	===~~Template Versions Ready to Use Anywhere Easily~~===	+	{{Button Toggle Surface}} · {{Link Toggle Surface}} · {{Checkbox Toggle Surface}}
		+
		+	:<small>''Note to Wiki admin's: for the checkboxes to work, you must add a function setupCheckboxShiftClick() that overrides the one included in wikibits.js''</small>
		+
		+	===Surface fade templates===
		+	Ready to use anywhere easily:

	{{Link FadeSurfaceBasic}} (basic)		{{Link FadeSurfaceBasic}} (basic)
Line 21:		Line 28:
	{{Link FadeInSurface}}		{{Link FadeInSurface}}

-	As ~~Buttons~~:<br/>	+	As buttons:<br/>

	{{Button FadeSurfaceBasic}} (basic)		{{Button FadeSurfaceBasic}} (basic)
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	{{Button FadeInSurface}}		{{Button FadeInSurface}}

-		+	===Surface fade code-in-page versions===
-		+
-		+
-	===Surface ~~Fade Code~~-in-~~Page Versions~~===	+

	While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.		While not templates, carry out similar functions as the `Surface Fade` templates and may be useful for further development or as examples of using Jmol coding in Proteopedia pages.
Line 61:		Line 65:


		+	==Atom rendering style==

-	==Label-handling ~~templates~~==	+	These controls are not templates, but inserted directly as wiki extension tags:
		+
		+	<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>spacefill on</scriptWhenChecked>
		+	<scriptWhenUnchecked>spacefill off</scriptWhenUnchecked>
		+	<text>spacefill on/off</text>
		+	</jmolCheckbox>
		+	</jmol>
		+
		+	<jmol>
		+	<jmolRadioGroup>
		+	<item>
		+	<text>spacefill on</text>
		+	<script>spacefill on</script>
		+	</item>
		+	<item>
		+	<text>spacefill off</text>
		+	<script>spacefill off</script>
		+	</item>
		+	</jmolRadioGroup>
		+	</jmol>
		+
		+	==Label handling==

	{{Link Toggle LabelsOff}} (No-demo made yet.)		{{Link Toggle LabelsOff}} (No-demo made yet.)

-	==Color ~~Handling Templates~~==	+	==Color handling==

	* See [[DRuMS#The DRuMS Color Schemes\|DRuMS color template]].		* See [[DRuMS#The DRuMS Color Schemes\|DRuMS color template]].

-	Additional ones not listed ~~[[DRuMS#The DRuMS Color Schemes\|~~there]]:	+	Additional ones not listed there:

-	{{Button ColorLeucine}} ~~(No-demo made yet.)~~	+	{{Button ColorLeucine}}

	{{Button ColorReceptorLeucine}} (No-demo made yet.)		{{Button ColorReceptorLeucine}} (No-demo made yet.)
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	{{[User:Wayne Decatur/Template ColorKey Composition lcprotein\|Template ColorKey Composition protein}} - `protein` darkened for light backgrounds		{{[User:Wayne Decatur/Template ColorKey Composition lcprotein\|Template ColorKey Composition protein}} - `protein` darkened for light backgrounds

		+	</StructureSection>

-	==Checkboxes and toggles templates==
-
-	See [[User:Angel_Herraez/Sandbox_2\|here]] for demo and how to make.

	==See Also==		==See Also==

Wayne Decatur: /* See Also */

Wayne Decatur — Mon, 31 Jul 2017 19:59:39 GMT

Wayne Decatur at 16:03, 24 July 2017

Wayne Decatur — Mon, 24 Jul 2017 16:03:47 GMT

←Older revision		Revision as of 16:03, 24 July 2017
Line 1:		Line 1:
	'''Templates as a tool'''		'''Templates as a tool'''

		+	Existing templates can be used in Proteopedia pages to call commonly used wiki-text or Jmol code. A good description of how to use them, with color templates, can be found [[DRuMS#The DRuMS Color Schemes\|here]]. Additional templates can be made.

		+	This page is meant to be a resource for finding and using templates.


Line 81:		Line 83:
	==Checkboxes and toggles templates==		==Checkboxes and toggles templates==

-	See [[~~http://proteopedia.org/wiki/index.php/~~User:Angel_Herraez/Sandbox_2\|here]] for demo and how to make.	+	See [[User:Angel_Herraez/Sandbox_2\|here]] for demo and how to make.

	==See Also==		==See Also==

Wayne Decatur: /* Color Handling Templates */

Wayne Decatur — Mon, 24 Jul 2017 15:59:34 GMT

Color Handling Templates

←Older revision		Revision as of 15:59, 24 July 2017
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	{{Button HeteroCPKColorScheme}} (No-demo made yet.)		{{Button HeteroCPKColorScheme}} (No-demo made yet.)

		+	{{[User:Wayne Decatur/Template ColorKey Composition lcprotein\|Template ColorKey Composition protein}} - `protein` darkened for light backgrounds

		+
		+	==Checkboxes and toggles templates==
		+
		+	See [[http://proteopedia.org/wiki/index.php/User:Angel_Herraez/Sandbox_2\|here]] for demo and how to make.

	==See Also==		==See Also==

Wayne Decatur at 15:52, 24 July 2017

Wayne Decatur — Mon, 24 Jul 2017 15:52:59 GMT

←Older revision		Revision as of 15:52, 24 July 2017
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	* See [[DRuMS#The DRuMS Color Schemes\|DRuMS color template]].		* See [[DRuMS#The DRuMS Color Schemes\|DRuMS color template]].

-	~~Proteopedia's ''Scene Authoring Tool'' implement much of the~~ DRuMS ~~color schemes, but not all.~~	+	Additional ones not listed [[DRuMS#The DRuMS Color Schemes\|there]]:
-	~~Several portions not implemented concern nucleotides.~~	+
-	~~{{Template:ColorKey Purines}}, {{Template:ColorKey Pyrimidines}},~~	+
-	~~<br>~~	+
-	~~{{Template:ColorKey Bases Nucleotides}},~~	+
-	~~<br>~~	+
-	~~{{Template:ColorKey Bases DNA}},~~	+
-	~~<br>~~	+
-	~~{{Template~~:~~ColorKey Bases RNA}}.~~	+
-	~~</big></blockquote>~~	+

-	~~The above colored terms were generated by including the following Template wikitext blocks:~~	+	{{Button ColorLeucine}} (No-demo made yet.)
-	~~<pre>~~	+
-	{{~~Template:ColorKey Purines~~}}	+
-	~~{{Template:ColorKey Pyrimidines}}~~	+
-	~~{{Template:ColorKey Bases Nucleotides}}~~	+
-	~~{{Template:ColorKey Bases DNA}}~~	+
-	~~{{Template:ColorKey Bases RNA}}~~	+
-	~~</pre>~~	+
-	~~<applet load='Image:Kt7.pdb.gz' size='250' frame='true' align='right' scene='User:Wayne_Decatur/kink~~-turn_motif/Kt7_halo/1' />A template exists for a related button that can be incorporated into Proteopedia pages and behaves similar to green scene link; when the button is pressed it results in coloring of the nucleotides according to the bases {{ColorKey Bases Nucleotides}}. ~~Example:~~	+
-	~~{{Button Toggle NucleicDrumsColorScheme}}~~	+
-	~~<br>~~	+
-	~~           <scene name='User:Wayne_Decatur/kink-turn_motif/Kt7_halo/1'>Reset</scene>~~	+

		+	{{Button ColorReceptorLeucine}} (No-demo made yet.)

-	~~ ~~	+	{{Button HeteroCPKColorScheme}} (No-demo made yet.)
-	~~ ~~	+
-		+
-		+
-	~~Similarly, for {{Template:ColorKey Purines}}/{{ColorKey Pyrimidines}}:<br>~~	+
-	{{Button ~~Toggle PurinePyrimidineDrumsColorScheme~~}}	+
-	~~<br>~~	+
-	~~           <scene name='User:Wayne_Decatur/kink~~-~~turn_motif/Kt7_halo/1'>Reset</scene>~~	+
-		+
-	~~ ~~	+
-		+
-	~~{{Button Toggle NucleicDrumsColorScheme}}~~	+
-		+
-	~~{{Button Toggle NucleicDrumsColorSchemeWcartoon}}~~	+
-		+
-	~~{{Button Toggle PurinePyrimidineDrumsColorScheme}}~~	+
-		+
-	~~These are based on the following mnemonics for A, C, G, T, & U:~~	+
-	~~<br><b><big>~~	+
-	~~<font color="#5050ff">Azure</font>,~~	+
-	~~<font color="#e00000">Crimson</font>,~~	+
-	~~<font color="#00c000">Green</font>,~~	+
-	~~<font color="#d0d000">Tweety Bird</font>,~~	+
-	~~<font color="#cc9900">Umber</font>~~.~~</big></b>~~	+
-	~~<blockquote><big>~~	+
-		+
-	~~{{ColorKey Bases RNA}}~~	+
-		+
-	~~{{ColorKey Bases DNA}}~~	+
-		+
-	~~{{ColorKey Bases Nucleotides}}~~	+
-		+
-	~~{ColorKey Purines Pyrimidines}}~~	+
-		+
-	~~{{ColorKey Purines}}~~	+
-		+
-	~~{{ColorKey Pyrimidines}}~~	+
-		+
-	~~{{Button ColorLeucine}}~~	+
-		+
-	~~{{Button ColorReceptorLeucine}}~~	+
-		+
-	~~{{Button HeteroCPKColorScheme}}~~	+

Wayne Decatur at 15:47, 24 July 2017

Wayne Decatur — Mon, 24 Jul 2017 15:47:47 GMT

←Older revision		Revision as of 15:47, 24 July 2017
Line 69:		Line 69:

	Proteopedia's ''Scene Authoring Tool'' implement much of the DRuMS color schemes, but not all.		Proteopedia's ''Scene Authoring Tool'' implement much of the DRuMS color schemes, but not all.
-	Several portions not implemented concern nucleotides. ~~These are based on the following mnemonics for A, C, G, T, & U:~~	+	Several portions not implemented concern nucleotides.
-	~~<br><b><big>~~	+
-	~~<font color="#5050ff">Azure</font>,~~	+
-	~~<font color="#e00000">Crimson</font>,~~	+
-	~~<font color="#00c000">Green</font>,~~	+
-	~~<font color="#d0d000">Tweety Bird</font>,~~	+
-	~~<font color="#cc9900">Umber</font>.</big></b>~~	+
-	~~<blockquote><big>~~	+
	{{Template:ColorKey Purines}}, {{Template:ColorKey Pyrimidines}},		{{Template:ColorKey Purines}}, {{Template:ColorKey Pyrimidines}},
	<br>		<br>
Line 94:		Line 87:
	{{Template:ColorKey Bases RNA}}		{{Template:ColorKey Bases RNA}}
	</pre>		</pre>
-	<applet load='Image:Kt7.pdb.gz' size='~~150~~' frame='true' align='~~left~~' scene='User:Wayne_Decatur/kink-turn_motif/Kt7_halo/1' />A template exists for a related button that can be incorporated into Proteopedia pages and behaves similar to green scene link; when the button is pressed it results in coloring of the nucleotides according to the bases {{ColorKey Bases Nucleotides}}. Example:	+	<applet load='Image:Kt7.pdb.gz' size='250' frame='true' align='right' scene='User:Wayne_Decatur/kink-turn_motif/Kt7_halo/1' />A template exists for a related button that can be incorporated into Proteopedia pages and behaves similar to green scene link; when the button is pressed it results in coloring of the nucleotides according to the bases {{ColorKey Bases Nucleotides}}. Example:
	{{Button Toggle NucleicDrumsColorScheme}}		{{Button Toggle NucleicDrumsColorScheme}}
	<br>		<br>
Line 116:		Line 109:

	{{Button Toggle PurinePyrimidineDrumsColorScheme}}		{{Button Toggle PurinePyrimidineDrumsColorScheme}}
		+
		+	These are based on the following mnemonics for A, C, G, T, & U:
		+	<br><b><big>
		+	<font color="#5050ff">Azure</font>,
		+	<font color="#e00000">Crimson</font>,
		+	<font color="#00c000">Green</font>,
		+	<font color="#d0d000">Tweety Bird</font>,
		+	<font color="#cc9900">Umber</font>.</big></b>
		+	<blockquote><big>

	{{ColorKey Bases RNA}}		{{ColorKey Bases RNA}}

←Older revision		Revision as of 19:59, 31 July 2017
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	* [[Proteopedia:Cookbook]]		* [[Proteopedia:Cookbook]]
	* [[DRuMS#The DRuMS Color Schemes\|DRuMS color templates]]		* [[DRuMS#The DRuMS Color Schemes\|DRuMS color templates]]
		+	* [[Help:Color_Keys]]