Purine nucleoside phosphorylase 3D structures - Revision history

Michal Harel at 07:28, 4 October 2023

Michal Harel — Wed, 04 Oct 2023 07:28:22 GMT

←Older revision		Revision as of 07:28, 4 October 2023
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	**[[3d1v]] – hPNP + mercapto-quinazolinone<br />		**[[3d1v]] – hPNP + mercapto-quinazolinone<br />
-	**[[7zsl]], [[7zsm]], [[7zsn]], [[7zso, [[7zsp]], [[7zsq]], [[7zsr]] – hPNP + inhibitor<br />	+	**[[7zsl]], [[7zsm]], [[7zsn]], [[7zso]], [[7zsp]], [[7zsq]], [[7zsr]] – hPNP + inhibitor<br />
	**[[5etj]], [[5ugf]] - hPNP (mutant) + inhibitor + phosphate<br />		**[[5etj]], [[5ugf]] - hPNP (mutant) + inhibitor + phosphate<br />
	**[[1z36]] – TvPNP + antibiotic<br />		**[[1z36]] – TvPNP + antibiotic<br />

Michal Harel at 07:27, 4 October 2023

Michal Harel — Wed, 04 Oct 2023 07:27:05 GMT

←Older revision		Revision as of 07:27, 4 October 2023
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	**[[4d8v]], [[4d8x]], [[4d8y]], [[4d98]] – BsPNP – ''Bacillus subtilis''<br />		**[[4d8v]], [[4d8x]], [[4d8y]], [[4d98]] – BsPNP – ''Bacillus subtilis''<br />
	**[[3tl6]] – EhPNP – ''Entamoeba histolica''<br />		**[[3tl6]] – EhPNP – ''Entamoeba histolica''<br />
-	**[[3uav]] – BcPNP – ''Bacillus cereus''<br />	+	**[[3uav]], [[7fbg]] – BcPNP – ''Bacillus cereus''<br />
	**[[4lkr]] – PNP – ''Shewanella oneidensis''<br />		**[[4lkr]] – PNP – ''Shewanella oneidensis''<br />
	**[[4tym]] – PNP – ''Streptococcus agalactiae'' <br />		**[[4tym]] – PNP – ''Streptococcus agalactiae'' <br />
		+	**[[8d38]] – PNP – ''Geobacillus Stearothermophilus'' <br />

	*Purine nucleoside phosphorylase binary complex with phosphate		*Purine nucleoside phosphorylase binary complex with phosphate
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	**[[5mx4]], [[5mx6]], [[5mx8]], [[5lu0]] - HpPNP + phosphate - ''Helicobacter pylori''<br />		**[[5mx4]], [[5mx6]], [[5mx8]], [[5lu0]] - HpPNP + phosphate - ''Helicobacter pylori''<br />
	**[[6aqu]] – PfPNP + phosphate – ''Plasmodium falciparum''<br />		**[[6aqu]] – PfPNP + phosphate – ''Plasmodium falciparum''<br />
		+	**[[3emv]] – PNP + phosphate – ''Plasmodium vivax''<br />

	*Purine nucleoside phosphorylase complex with guanine and guanine derivatives		*Purine nucleoside phosphorylase complex with guanine and guanine derivatives
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	**[[3d1v]] – hPNP + mercapto-quinazolinone<br />		**[[3d1v]] – hPNP + mercapto-quinazolinone<br />
		+	**[[7zsl]], [[7zsm]], [[7zsn]], [[7zso, [[7zsp]], [[7zsq]], [[7zsr]] – hPNP + inhibitor<br />
	**[[5etj]], [[5ugf]] - hPNP (mutant) + inhibitor + phosphate<br />		**[[5etj]], [[5ugf]] - hPNP (mutant) + inhibitor + phosphate<br />
	**[[1z36]] – TvPNP + antibiotic<br />		**[[1z36]] – TvPNP + antibiotic<br />
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	**[[1k9s]], [[3ut6]] – EcPNP + formycin derivative + phosphate<br />		**[[1k9s]], [[3ut6]] – EcPNP + formycin derivative + phosphate<br />
	**[[7f3v]], [[7w1g]] – EcPNP (mutant) + UDP derivative + phosphate<br />		**[[7f3v]], [[7w1g]] – EcPNP (mutant) + UDP derivative + phosphate<br />
-	**[[6aqs]] – PfPNP (mutant) + inhibitor + phosphate<br />	+	**[[3fow]], [[6aqs]] – PfPNP (mutant) + inhibitor + phosphate<br />
	**[[5znc]], [[5zni]] – PfPNP + quinine derivative + phosphate<br />		**[[5znc]], [[5zni]] – PfPNP + quinine derivative + phosphate<br />
		+	**[[1nw4]] – PfPNP + inhibitor + sulfate<br />
	**[[3phc]] – PfPNP + inhibitor + phosphate<br />		**[[3phc]] – PfPNP + inhibitor + phosphate<br />
	**[[2p4s]] – PNP + inhibitor + phosphate – ''Anopheles gambiae''<br />		**[[2p4s]] – PNP + inhibitor + phosphate – ''Anopheles gambiae''<br />
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	**[[3of3]] – VcPNP + inhibitor + phosphate<br />		**[[3of3]] – VcPNP + inhibitor + phosphate<br />
	**[[4da6]], [[4da7]], [[4dar]] – BsPNP + drug<br />		**[[4da6]], [[4da7]], [[4dar]] – BsPNP + drug<br />
		+	**[[3ix2]] – MtPNP + drug<br />
		+	**[[8c25]] – MtPNP + inhibitor<br />

	*PNP DeoD-type		*PNP DeoD-type
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	**[[6f5a]], [[6f5i]], [[6g7x]] – HpPNP <br />		**[[6f5a]], [[6f5i]], [[6g7x]] – HpPNP <br />
	**[[6f4w]], [[6f4x]], [[6f52]] – HpPNP + formycin <br />		**[[6f4w]], [[6f4x]], [[6f52]] – HpPNP + formycin <br />
		+	**[[7ooy]], [[7ooz]], [[7op9]], [[7opa]] – HpPNP + purine derivative <br />
	**[[6xz2]] – EcPNP (mutant) + formycin <br />		**[[6xz2]] – EcPNP (mutant) + formycin <br />
	}}		}}

	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel at 10:20, 8 February 2022

Michal Harel — Tue, 08 Feb 2022 10:20:08 GMT

←Older revision		Revision as of 10:20, 8 February 2022
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	**[[1a69]], [[1pr1]] – EcPNP + formycin <br />		**[[1a69]], [[1pr1]] – EcPNP + formycin <br />
	**[[1k9s]], [[3ut6]] – EcPNP + formycin derivative + phosphate<br />		**[[1k9s]], [[3ut6]] – EcPNP + formycin derivative + phosphate<br />
		+	**[[7f3v]], [[7w1g]] – EcPNP (mutant) + UDP derivative + phosphate<br />
	**[[6aqs]] – PfPNP (mutant) + inhibitor + phosphate<br />		**[[6aqs]] – PfPNP (mutant) + inhibitor + phosphate<br />
	**[[5znc]], [[5zni]] – PfPNP + quinine derivative + phosphate<br />		**[[5znc]], [[5zni]] – PfPNP + quinine derivative + phosphate<br />
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	**[[6f5a]], [[6f5i]], [[6g7x]] – HpPNP <br />		**[[6f5a]], [[6f5i]], [[6g7x]] – HpPNP <br />
	**[[6f4w]], [[6f4x]], [[6f52]] – HpPNP + formycin <br />		**[[6f4w]], [[6f4x]], [[6f52]] – HpPNP + formycin <br />
		+	**[[6xz2]] – EcPNP (mutant) + formycin <br />
	}}		}}

	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel at 08:01, 20 October 2020

Michal Harel — Tue, 20 Oct 2020 08:01:55 GMT

Michal Harel: New page: ==3D structures of purine nucleoside phosphorylase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *'''Purine nuc...

Michal Harel — Thu, 05 Dec 2019 10:27:28 GMT

New page: ==3D structures of purine nucleoside phosphorylase== Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| *'''Purine nuc...

New page

==3D structures of purine nucleoside phosphorylase==

Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
{{#tree:id=OrganizedByTopic|openlevels=0|

*'''Purine nucleoside phosphorylase'''

**[[1ula]], [[1m73]] – hPNP – human 
**[[1pbn]] – bPNP – bovine 
**[[1odk]], [[1odl]] – TtPNP – ''Thermus thermophilus'' 
**[[1z33]] – TvPNP – ''Trichomonas vaginalis'' 
**[[1tcv]], [[1td1]], [[5cxs]], [[5cxq]] – SmPNP – ''Schistosoma mansoni'' 
**[[2b94]] – PNP – ''Plasmodium knowlesi'' 
**[[4mar]] – MrPNP – ''Meiothermus ruber'' 
**[[1ecp]], [[1oty]], [[1ou4]], [[1yqq]], [[1yqu]], [[1yr3]], [[3onv]], [[4rj2]], [[4ts3]], [[4ts9]] – EcPNP – ''Escherichia coli'' 
**[[1otx]], [[1oum]], [[1ov6]], [[3opv]], [[4tta]], [[4tti]], [[4ttj]] – EcPNP (mutant) 
**[[1vhj]] – VcPNP – ''Vibrio cholerae'' 
**[[1xe3]] – PNP – ''Bacillus anthracis'' 
**[[4d8v]], [[4d8x]], [[4d8y]], [[4d98]] – BsPNP – ''Bacillus subtilis'' 
**[[3tl6]] – EhPNP – ''Entamoeba histolica'' 
**[[3uav]] – BcPNP – ''Bacillus cereus'' 
**[[4lkr]] – PNP – ''Shewanella oneidensis'' 
**[[4tym]] – PNP – ''Streptococcus agalactiae'' 

*Purine nucleoside phosphorylase binary complex with phosphate

**[[4gka]] – hPNP (mutant) + phosphate 
**[[1a9o]], [[3pnp]], [[4pnp]] – bPNP + phosphate 
**[[1qe5]] – CePNP + phosphate - ''Cellulomonas'' 
**[[1tcu]] – SmPNP + phosphate 
**[[3khs]] – PNP + phosphate – grouper iridovirus 
**[[4m3n]] – MrPNP + phosphate 
**[[3ooe]], [[3ooh]] – EcPNP + phosphate 
**[[4ldn]] – PNP + phosphate – ''Vibrio fischeri'' 
**[[4m7w]] – PNP + phosphate – ''Leptotrichia buccalis'' 
**[[5mx4]], [[5mx6]], [[5mx8]], [[5lu0]] - HpPNP + phosphate - ''Helicobacter pylori'' 
**[[6aqu]] – PfPNP + phosphate – ''Plasmodium falciparum'' 

*Purine nucleoside phosphorylase complex with guanine and guanine derivatives

**[[1ulb]], [[1v2h]] – hPNP + guanine 
**[[4ece]] – hPNP (mutant) + guanine 
**[[1rfg]] – hPNP + guanosine 
**[[1yry]], [[3iny]] – hPNP + guanine derivative 
**[[1pwy]], [[1v41]], [[1v45]] – hPNP + antiviral drug 
**[[1v48]], [[2ai1]], [[2ai3]], [[3fuc]] – bPNP + guanine derivative 
**[[1b8n]] – bPNP + guanine derivative + phosphate 
**[[3e9z]] – SmPNP + guanine derivative 
**[[3iex]] – SmPNP + guanosine 
**[[1odj]] – TtPNP + guanosine 
**[[4da0]], [[4da8]], [[4dae]] – BsPNP + guanosine derivative 
**[[1vmk]] – PNP + guanine – ''Thermotoga maritima'' 
**[[3iom]] – MtPNP + guanine derivative - ''Mycobacterium tuberculosis'' 
**[[5i3c]] - EcPNP + guanine derivative 
**[[1c3x]] – CePNP + guanine derivative + phosphate 

*Purine nucleoside phosphorylase complex with inosine and inosine derivatives

**[[1rct]] – hPNP + inosine 
**[[1v3q]] – hPNP + anti HIV drug 
**[[1a9q]], [[1a9s]] – bPNP + inosine 
**[[2ai2]] – bPNP + inosine derivative 
**[[1a9t]], [[1a9p]], [[4pnp]] – bPNP + deazainosine + phosphate 
**[[3faz]] – SmPNP + inosine 
**[[5tbv]] – SmPNP + tubercidine 
**[[5tbt]] – SmPNP + cytidine 
**[[1z38]] – TvPNP + inosine 
**[[3uax]] – BcPNP + inosine 
**[[2bsx]] – PfPNP + inosine 
**[[1z39]] – TvPNP + deoxyinosine 
**[[1pr0]] - EcPNP + inosine + phosphate 

*Purine nucleoside phosphorylase complex with xanthine and xanthine derivatives

**[[1pf7]], [[1rr6]], [[1rsz]], [[1rt9]], [[3k8o]], [[3k8q]] – hPNP + transition state analog 
**[[2on6]] – hPNP (mutant) + transition state analog 
**[[2a0w]], [[2a0x]], [[2a0y]], [[2oc4]], [[2oc9]] – hPNP (mutant) + hypoxanthine derivative 
**[[2q7o]], [[3phb]] – hPNP + transition state analog + phosphate 
**[[4ear]], [[4eb8]] – hPNP (mutant) + transition state analog + phosphate 
**[[1vfn]], [[1a9r]] – bPNP + hypoxanthine 
**[[1b8o]], [[1g2o]] – bPNP + hypoxanthine derivative + phosphate 
**[[3bgs]] – bPNP + transition state analog + phosphate 
**[[3fnq]], [[5tbu]] – SmPNP + hypoxanthine 
**[[4dab]] – BsPNP + hypoxanthine 
**[[4uc0]] – PNP + hypoxanthine – ''Agrobacterium vitis'' 
**[[5ifk]] - PNP + hypoxanthine - ''Kluyveromyces lactis'' 
**[[3enz]] – PfPNP + hypoxanthine + ribose + arsenate 
**[[5iu6]] - EcPNP + hypoxanthine derivative 
**[[3odg]] – YpPNP + xanthine – ''Yersinia pseudotuberculosis'' 
**[[3mb8]] – PNP + transition state analog + phosphate – ''Toxoplasma gondii'' 
**[[3scz]] – MtPNP + hypoxanthine 
**[[1n3i]] – MtPNP + deazahypoxanthine + phosphate 
**[[1i80]] – MtPNP + iminoribitol + deazahypoxanthine + phosphate 

*Purine nucleoside phosphorylase complex with adenine and adenine derivatives

**[[3ggs]] – hPNP (mutant) + adenosine derivative 
**[[1odi]] – TtPNP + adenosine 
**[[1z34]], [[1z35]], [[1z37]] – TvPNP + adenosine derivative 
**[[4ns1]] – PgPNP + adenosine derivative – ''Porphyromonas gingivalis'' 
**[[4nsn]] – PgPNP + adenine 
**[[3e9r]], [[5tbs]] – SmPNP + adenine 
**[[3f8w]] – SmPNP + adenosine 
**[[4dao]] – BsPNP + adenine 
**[[1vhw]] – VcPNP + adenosine 
**[[3u40]] – EhPNP + adenosine 
**[[4d9h]] – BsPNP + adenosine 
**[[4dan]] – BsPNP + adenosine derivative 
**[[2ac7]], [[3uaw]] – BcPNP + adenosine 
**[[3uay]], [[3uaz]] – BcPNP (mutant) + adenosine 
**[[4m1e]] – PNP + adenine – ''Planctomyces limnophilus'' 
**[[4lna]] – PNP + adenine + phosphate – ''Spirosoma linguale'' 
**[[1pk7]] - EcPNP + adenosine + phosphate 
**[[1pk9]], [[1pke]], [[1pr5]], [[1pr6]], [[1pw7]] - EcPNP + adenosine derivative + phosphate 

*Purine nucleoside phosphorylase complex with purine and purine derivatives

**[[3gb9]] – hPNP (mutant) + purine derivative 
**[[1lv8]], [[1lvu]], [[2qpl]] – bPNP + purine derivative 
**[[1fxu]] – bPNP + purine derivative + phosphate 
**[[1ovg]] - EcPNP (mutant) + purine derivative 
**[[1pr2]], [[1pr4]] – EcPNP + purine derivative + phosphate 

*Other purine nucleoside phosphorylase complexes

**[[3d1v]] – hPNP + mercapto-quinazolinone 
**[[5etj]], [[5ugf]] - hPNP (mutant) + inhibitor + phosphate 
**[[1z36]] – TvPNP + antibiotic 
**[[2i4t]], [[2isc]] – TvPNP + inhibitor + phosphate 
**[[3djf]] – SmPNP + inhibitor 
**[[3e0q]] – SmPNP + pyrimidine derivative 
**[[3fb1]] – SmPNP + ribose-1-phosphate 
**[[6awe]], [[6axa]], [[6b2l]], [[6b37]], [[6b3l]], [[6b4q]], [[6b4t]], [[6b56]], [[6b6k]], [[6b71]], [[6b7i]], [[6bb7]], [[6bfv]], [[6bhb]], [[6bi1]], [[6bi9]], [[6bif]], [[6bj6]], [[6bj7]] – SmPNP + inhibitor 
**[[5ko5]] - SmPNP + cytosine 
**[[5ko6]] - SmPNP + cytosine + ribose-1-phosphate 
**[[1a69]], [[1pr1]] – EcPNP + formycin 
**[[1k9s]], [[3ut6]] – EcPNP + formycin derivative + phosphate 
**[[6aqs]]]] – PfPNP (mutant) + inhibitor + phosphate 
**[[3phc]] – PfPNP + inhibitor + phosphate 
**[[2p4s]] – PNP + inhibitor + phosphate – ''Anopheles gambiae'' 
**[[3occ]] – YpPNP + inhibitor + phosphate 
**[[3of3]] – VcPNP + inhibitor + phosphate 
**[[4da6]], [[4da7]], [[4dar]] – BsPNP + drug 

*PNP DeoD-type

**[[6f5a]], [[6f5i]], [[6g7x]] – HpPNP 
**[[6f4w]], [[6f4x]], [[6f52]] – HpPNP + formycin 
}}

[[Category:Topic Page]]

←Older revision		Revision as of 08:01, 20 October 2020
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	**[[1z36]] – TvPNP + antibiotic<br />		**[[1z36]] – TvPNP + antibiotic<br />
	**[[2i4t]], [[2isc]] – TvPNP + inhibitor + phosphate<br />		**[[2i4t]], [[2isc]] – TvPNP + inhibitor + phosphate<br />
-	**[[3djf]] – SmPNP + inhibitor<br />
	**[[3e0q]] – SmPNP + pyrimidine derivative<br />		**[[3e0q]] – SmPNP + pyrimidine derivative<br />
	**[[3fb1]] – SmPNP + ribose-1-phosphate <br />		**[[3fb1]] – SmPNP + ribose-1-phosphate <br />
-	**[[6awe]], [[6axa]], [[6b2l]], [[6b37]], [[6b3l]], [[6b4q]], [[6b4t]], [[6b56]], [[6b6k]], [[6b71]], [[6b7i]], [[6bb7]], [[6bfv]], [[6bhb]], [[6bi1]], [[6bi9]], [[6bif]], [[6bj6]], [[6bj7]] – SmPNP + inhibitor <br />	+	**[[6awe]], [[6axa]], [[6b2l]], [[6b37]], [[6b3l]], [[6b4q]], [[6b4t]], [[6b56]], [[6b6k]], [[6b71]], [[6b7i]], [[6bb7]], [[6bfv]], [[6bhb]], [[6bi1]], [[6bi9]], [[6bif]], [[6bj6]], [[6bj7]], [[3djf]] – SmPNP + inhibitor <br />
	**[[5ko5]] - SmPNP + cytosine<br />		**[[5ko5]] - SmPNP + cytosine<br />
	**[[5ko6]] - SmPNP + cytosine + ribose-1-phosphate<br />		**[[5ko6]] - SmPNP + cytosine + ribose-1-phosphate<br />
	**[[1a69]], [[1pr1]] – EcPNP + formycin <br />		**[[1a69]], [[1pr1]] – EcPNP + formycin <br />
	**[[1k9s]], [[3ut6]] – EcPNP + formycin derivative + phosphate<br />		**[[1k9s]], [[3ut6]] – EcPNP + formycin derivative + phosphate<br />
-	**[[6aqs]]]] – PfPNP (mutant) + inhibitor + phosphate<br />	+	**[[6aqs]] – PfPNP (mutant) + inhibitor + phosphate<br />
		+	**[[5znc]], [[5zni]] – PfPNP + quinine derivative + phosphate<br />
	**[[3phc]] – PfPNP + inhibitor + phosphate<br />		**[[3phc]] – PfPNP + inhibitor + phosphate<br />
	**[[2p4s]] – PNP + inhibitor + phosphate – ''Anopheles gambiae''<br />		**[[2p4s]] – PNP + inhibitor + phosphate – ''Anopheles gambiae''<br />