SandboxGenetic322-6 - Revision history

David O'Brochta at 21:21, 31 January 2017

David O'Brochta — Tue, 31 Jan 2017 21:21:06 GMT

←Older revision		Revision as of 21:21, 31 January 2017
Line 15:		Line 15:
	One of the objectives is to have the students manipulate structures to appreciate the 3 dimensional nature of the molecules we are discussing and to begin to help them conceptualize how these molecule might interact etc.		One of the objectives is to have the students manipulate structures to appreciate the 3 dimensional nature of the molecules we are discussing and to begin to help them conceptualize how these molecule might interact etc.

		+	<StructureSection load='1bna' size='350' side='right' caption='Escherichia coli reca protein-bound DNA (PDB entry [[3rec]])' scene=''>

		+	Anything in this section will appear adjacent to the 3D structure and will be scrollable.
		+
		+	</StructureSection>

	'''HIV-1 Reverse Transcriptase'''		'''HIV-1 Reverse Transcriptase'''

David O'Brochta at 16:42, 23 January 2017

David O'Brochta — Mon, 23 Jan 2017 16:42:32 GMT

←Older revision		Revision as of 16:42, 23 January 2017
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-	''' Ishan Shah'''	+	TA: ''' Ishan Shah'''

David O'Brochta at 16:42, 23 January 2017

David O'Brochta — Mon, 23 Jan 2017 16:42:17 GMT

←Older revision		Revision as of 16:42, 23 January 2017
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	One of the objectives is to have the students manipulate structures to appreciate the 3 dimensional nature of the molecules we are discussing and to begin to help them conceptualize how these molecule might interact etc.		One of the objectives is to have the students manipulate structures to appreciate the 3 dimensional nature of the molecules we are discussing and to begin to help them conceptualize how these molecule might interact etc.
		+
		+

	'''HIV-1 Reverse Transcriptase'''		'''HIV-1 Reverse Transcriptase'''
	----		----
-	''' Ishan Shah
-	'''
	The <scene name='Reverse_transcriptase/Fingers/4'>Polymerase active site</scene> of Reverse Transcriptase is what recognizes the initial RNA molecule and begins Reverse Transcription of that molecule into DNA.		The <scene name='Reverse_transcriptase/Fingers/4'>Polymerase active site</scene> of Reverse Transcriptase is what recognizes the initial RNA molecule and begins Reverse Transcription of that molecule into DNA.
		+
		+
		+	''' Ishan Shah'''

David O'Brochta at 16:41, 23 January 2017

David O'Brochta — Mon, 23 Jan 2017 16:41:36 GMT

←Older revision		Revision as of 16:41, 23 January 2017
Line 15:		Line 15:
	One of the objectives is to have the students manipulate structures to appreciate the 3 dimensional nature of the molecules we are discussing and to begin to help them conceptualize how these molecule might interact etc.		One of the objectives is to have the students manipulate structures to appreciate the 3 dimensional nature of the molecules we are discussing and to begin to help them conceptualize how these molecule might interact etc.

		+	'''HIV-1 Reverse Transcriptase'''
	----		----
-	~~TA:~~ Ishan Shah	+	''' Ishan Shah
-		+	'''
	The <scene name='Reverse_transcriptase/Fingers/4'>Polymerase active site</scene> of Reverse Transcriptase is what recognizes the initial RNA molecule and begins Reverse Transcription of that molecule into DNA.		The <scene name='Reverse_transcriptase/Fingers/4'>Polymerase active site</scene> of Reverse Transcriptase is what recognizes the initial RNA molecule and begins Reverse Transcription of that molecule into DNA.

David O'Brochta at 16:40, 23 January 2017

David O'Brochta — Mon, 23 Jan 2017 16:40:29 GMT

←Older revision		Revision as of 16:40, 23 January 2017
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	<Structure load='1hmv' size='350' frame='true' align='right' caption='Structure of Reverse Transcriptase found in HIV-1' scene='Insert optional scene name here' />		<Structure load='1hmv' size='350' frame='true' align='right' caption='Structure of Reverse Transcriptase found in HIV-1' scene='Insert optional scene name here' />

-	TA: Ishan Shah
-	The <scene name='Reverse_transcriptase/Fingers/4'>Polymerase active site</scene> of Reverse Transcriptase is what recognizes the initial RNA molecule and begins Reverse Transcription of that molecule into DNA.
-	----
	This is a Sandbox page that you can use for creating our discussion project.		This is a Sandbox page that you can use for creating our discussion project.

Line 17:		Line 14:

	One of the objectives is to have the students manipulate structures to appreciate the 3 dimensional nature of the molecules we are discussing and to begin to help them conceptualize how these molecule might interact etc.		One of the objectives is to have the students manipulate structures to appreciate the 3 dimensional nature of the molecules we are discussing and to begin to help them conceptualize how these molecule might interact etc.
		+
		+	----
		+	TA: Ishan Shah
		+
		+	The <scene name='Reverse_transcriptase/Fingers/4'>Polymerase active site</scene> of Reverse Transcriptase is what recognizes the initial RNA molecule and begins Reverse Transcription of that molecule into DNA.

David O'Brochta at 16:39, 23 January 2017

David O'Brochta — Mon, 23 Jan 2017 16:39:56 GMT

←Older revision		Revision as of 16:39, 23 January 2017
Line 2:		Line 2:

	TA: Ishan Shah		TA: Ishan Shah
-	The ~~active site of Reverse Transcriptase~~ <scene name='Reverse_transcriptase/Fingers/4'>Polymerase active site</scene>	+	The <scene name='Reverse_transcriptase/Fingers/4'>Polymerase active site</scene> of Reverse Transcriptase is what recognizes the initial RNA molecule and begins Reverse Transcription of that molecule into DNA.
	----		----
	This is a Sandbox page that you can use for creating our discussion project.		This is a Sandbox page that you can use for creating our discussion project.

David O'Brochta at 16:37, 23 January 2017

David O'Brochta — Mon, 23 Jan 2017 16:37:52 GMT

←Older revision		Revision as of 16:37, 23 January 2017
Line 2:		Line 2:

	TA: Ishan Shah		TA: Ishan Shah
		+	The active site of Reverse Transcriptase <scene name='Reverse_transcriptase/Fingers/4'>Polymerase active site</scene>
	----		----
	This is a Sandbox page that you can use for creating our discussion project.		This is a Sandbox page that you can use for creating our discussion project.

David O'Brochta at 16:27, 23 January 2017

David O'Brochta — Mon, 23 Jan 2017 16:27:51 GMT

←Older revision		Revision as of 16:27, 23 January 2017
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-	<Structure load='1hmv' size='350' frame='true' align='right' caption='Structure of HIV-1 ~~Reverse Transcriptase~~' scene='Insert optional scene name here' />	+	<Structure load='1hmv' size='350' frame='true' align='right' caption='Structure of Reverse Transcriptase found in HIV-1' scene='Insert optional scene name here' />

	TA: Ishan Shah		TA: Ishan Shah

David O'Brochta at 16:17, 23 January 2017

David O'Brochta — Mon, 23 Jan 2017 16:17:58 GMT

←Older revision		Revision as of 16:17, 23 January 2017
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		+	<Structure load='1hmv' size='350' frame='true' align='right' caption='Structure of HIV-1 Reverse Transcriptase' scene='Insert optional scene name here' />
		+
		+	TA: Ishan Shah
		+	----
	This is a Sandbox page that you can use for creating our discussion project.		This is a Sandbox page that you can use for creating our discussion project.

David O'Brochta: New page: This is a Sandbox page that you can use for creating our discussion project. I would like for you to watch the short training videos. Each is short and you can view them all in about 40 ...

David O'Brochta — Wed, 04 Jan 2017 21:08:21 GMT

New page: This is a Sandbox page that you can use for creating our discussion project. I would like for you to watch the short training videos. Each is short and you can view them all in about 40 ...

New page

This is a Sandbox page that you can use for creating our discussion project.

I would like for you to watch the short training videos. Each is short and you can view them all in about 40 mins. These provide the basic knowledge you will need to our discussion sections.

I need you to get some basic familiarity with this package so you will be able to help students.

Our first three discussions will focus on 'structure'. Structure of DNA, proteins, and RNA.

The students will work in 2 person teams and will create a Proteopedia page on their assigned molecule and will be asked to research their molecule and create 'scenes' which are representations of the molecule that illustrates some key features.

There will be a work sheet the students will follow to help them through the project.

One of the objectives is to have the students manipulate structures to appreciate the 3 dimensional nature of the molecules we are discussing and to begin to help them conceptualize how these molecule might interact etc.