Sandbox Assemblies - Revision history

Angel Herraez: test page for loading of mmCIF assemblies

Angel Herraez — Thu, 28 Jan 2016 00:10:49 GMT

test page for loading of mmCIF assemblies

←Older revision		Revision as of 00:10, 28 January 2016
Line 52:		Line 52:
	</tr>		</tr>
	</table>		</table>
		+
		+	Hints: to check the proper loading of simplified vs. full model:
		+	* check nr. of models in menu > Model(s)
		+	* if there are no ligands, menu > select > element will display either just Carbon or C,O,N...
		+	* if there are ligands, open the console and try "select protein and not _C"

Angel Herraez: test page for loading of mmCIF assemblies

Angel Herraez — Thu, 28 Jan 2016 00:07:55 GMT

test page for loading of mmCIF assemblies

←Older revision		Revision as of 00:07, 28 January 2016
Line 1:		Line 1:
	==Testing mmCIF assembly files==		==Testing mmCIF assembly files==
		+	Index to test pages:

	<table>		<table>
-	<tr>	+	<tr>
-	<td>~~4MNE has~~ 1 ~~model, from~~ X-ray	+	<th> </th>
-	</td>	+	<th>Calpha only?</th>
-	<td><~~Structure load~~=~~'4mne_1' size~~=~~'350' frame~~=~~'true'~~ align=~~'right' caption~~=~~'assembly for 4mne.pdb' scene~~='' />	+	<th>nr. models</th>
-	</td>	+	<th>exp.technique</th>
-	</tr>	+	</tr>
-		+	<tr>
-	<tr>	+	<td>[[Sandbox_Assemblies/4mne\|4mne]]</td>
-	<td>~~1AE4 is~~ C~~α~~-~~only, has~~ 1 ~~model, from~~ X-ray	+	<td><div align="center"></div></td>
-	</td>	+	<td><div align="center">1</div></td>
-	<td><~~Structure load~~=~~'1ae4_1' size='350' frame='true'~~ align=~~'right' caption='assembly for 1ae4.pdb' scene=''~~ />	+	<td>X-ray</td>
-	</td>	+	</tr>
-	</tr>	+	<tr>
-		+	<td>[[Sandbox_Assemblies/1ae4\|1ae4]]</td>
		+	<td><div align="center">C</div></td>
		+	<td><div align="center">1</div></td>
		+	<td>X-ray</td>
		+	</tr>
		+	<tr>
		+	<td>[[Sandbox_Assemblies/2k8v\|2k8v]]</td>
		+	<td><div align="center"></div></td>
		+	<td><div align="center">40</div></td>
		+	<td>solution NMR</td>
		+	</tr>
		+	<tr>
		+	<td>[[Sandbox_Assemblies/1m8m\|1m8m]]</td>
		+	<td><div align="center"></div></td>
		+	<td><div align="center">12</div></td>
		+	<td>solid-state NMR</td>
		+	</tr>
		+	<tr>
		+	<td>[[Sandbox_Assemblies/2qfg\|2qfg]]</td>
		+	<td><div align="center">C</div></td>
		+	<td><div align="center">12</div></td>
		+	<td>X-ray solution scattering</td>
		+	</tr>
		+	<tr>
		+	<td>[[Sandbox_Assemblies/2ic4\|2ic4]]</td>
		+	<td><div align="center">C</div></td>
		+	<td><div align="center">1</div></td>
		+	<td>X-ray solution scattering</td>
		+	</tr>
		+	<tr>
		+	<td>[[Sandbox_Assemblies/2lev\|2lev]]</td>
		+	<td><div align="center"></div></td>
		+	<td><div align="center">20</div></td>
		+	<td>hybrid, sol'n scattering + sol'n NMR</td>
		+	</tr>
	</table>		</table>

Angel Herraez: test page for loading of mmCIF assemblies

Angel Herraez — Wed, 27 Jan 2016 23:06:06 GMT

test page for loading of mmCIF assemblies

←Older revision		Revision as of 23:06, 27 January 2016
Line 1:		Line 1:
	==Testing mmCIF assembly files==		==Testing mmCIF assembly files==
-	<StructureSection load='1xxx_1' size='340' side='right' caption='assembly for 1xxx.pdb' scene=''>
-	Testing mmCIF assembly files

		+	<table>
		+	<tr>
		+	<td>4MNE has 1 model, from X-ray
		+	</td>
		+	<td><Structure load='4mne_1' size='350' frame='true' align='right' caption='assembly for 4mne.pdb' scene='' />
		+	</td>
		+	</tr>

-	</~~StructureSection~~>	+	<tr>
		+	<td>1AE4 is Cα-only, has 1 model, from X-ray
		+	</td>
		+	<td><Structure load='1ae4_1' size='350' frame='true' align='right' caption='assembly for 1ae4.pdb' scene='' />
		+	</td>
		+	</tr>
		+
		+	</table>

Angel Herraez: test page for loading of mmCIF assemblies

Angel Herraez — Wed, 27 Jan 2016 21:05:44 GMT

test page for loading of mmCIF assemblies

←Older revision		Revision as of 21:05, 27 January 2016
Line 1:		Line 1:
-	==~~Your Heading Here (maybe something like 'Structure')~~==	+	==Testing mmCIF assembly files==
	<StructureSection load='1xxx_1' size='340' side='right' caption='assembly for 1xxx.pdb' scene=''>		<StructureSection load='1xxx_1' size='340' side='right' caption='assembly for 1xxx.pdb' scene=''>
	Testing mmCIF assembly files		Testing mmCIF assembly files

Angel Herraez: test page for loading of mmCIF assemblies

Angel Herraez — Wed, 27 Jan 2016 20:49:54 GMT

test page for loading of mmCIF assemblies

New page

==Your Heading Here (maybe something like 'Structure')==
<StructureSection load='1xxx_1' size='340' side='right' caption='assembly for 1xxx.pdb' scene=''>
Testing mmCIF assembly files

</StructureSection>