http://52.214.119.220/wiki/index.php?title=Sandbox_Assemblies/2lev&action=history Revision history for this page on the wiki en MediaWiki 1.11.2 Thu, 09 Apr 2026 16:47:50 GMT http://52.214.119.220/wiki/index.php?title=Sandbox_Assemblies/2lev&diff=2525367&oldid=prev <p>test page for loading of mmCIF assemblies</p> <table style="background-color: white; color:black;"> <col class='diff-marker' /> <col class='diff-content' /> <col class='diff-marker' /> <col class='diff-content' /> <tr> <td colspan='2' style="background-color: white; color:black;">←Older revision</td> <td colspan='2' style="background-color: white; color:black;">Revision as of 10:25, 28 January 2016</td> </tr> <tr><td colspan="2" class="diff-lineno">Line 4:</td> <td colspan="2" class="diff-lineno">Line 4:</td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>It should load as simplified model (C&amp;alpha; cartoon of model 1) and then available as full model (ensemble).</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>It should load as simplified model (C&amp;alpha; cartoon of model 1) and then available as full model (ensemble).</div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div>Full model is fine, but simple model lacks the DNA; <del style="color: red; font-weight: bold; text-decoration: none;">something </del>to <del style="color: red; font-weight: bold; text-decoration: none;">investigate </del>(<del style="color: red; font-weight: bold; text-decoration: none;">we didn't experiment </del>with <del style="color: red; font-weight: bold; text-decoration: none;">nucleics </del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div>Full model is fine, but simple model lacks the DNA; <ins style="color: red; font-weight: bold; text-decoration: none;">the problem seems </ins>to <ins style="color: red; font-weight: bold; text-decoration: none;">be in Jmol parsing the nucleic atoms in the assembly mmCIF file </ins>(<ins style="color: red; font-weight: bold; text-decoration: none;">an issue either </ins>with <ins style="color: red; font-weight: bold; text-decoration: none;">file format or with Jmol mmCIF reader</ins>)</div></td></tr> <tr><td class='diff-marker'>-</td><td style="background: #ffa; color:black; font-size: smaller;"><div><del style="color: red; font-weight: bold; text-decoration: none;">when setting up the new script</del>)<del style="color: red; font-weight: bold; text-decoration: none;">.</del></div></td><td class='diff-marker'>+</td><td style="background: #cfc; color:black; font-size: smaller;"><div></div></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"></td></tr> <tr><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;Structure load='2lev_1' size='350' scene='' /&gt;</div></td><td class='diff-marker'> </td><td style="background: #eee; color:black; font-size: smaller;"><div>&lt;Structure load='2lev_1' size='350' scene='' /&gt;</div></td></tr> </table> Thu, 28 Jan 2016 10:25:39 GMT Angel Herraez http://52.214.119.220/wiki/index.php/Talk:Sandbox_Assemblies/2lev http://52.214.119.220/wiki/index.php?title=Sandbox_Assemblies/2lev&diff=2523843&oldid=prev <p>test page for loading of mmCIF assemblies</p> <p><b>New page</b></p><div>2lev has 20 models, from solution scattering + solution NMR (hybrid).<br /> It has protein + DNA.<br /> <br /> It should load as simplified model (C&amp;alpha; cartoon of model 1) and then available as full model (ensemble).<br /> <br /> Full model is fine, but simple model lacks the DNA; something to investigate (we didn't experiment with nucleics <br /> when setting up the new script).<br /> <br /> &lt;Structure load='2lev_1' size='350' scene='' /&gt;</div> Wed, 27 Jan 2016 23:46:30 GMT Angel Herraez http://52.214.119.220/wiki/index.php/Talk:Sandbox_Assemblies/2lev