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		<title>Sheets in Proteins - Revision history</title>
		<link>http://52.214.119.220/wiki/index.php?title=Sheets_in_Proteins&amp;action=history</link>
		<description>Revision history for this page on the wiki</description>
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			<title>Karsten Theis at 11:00, 6 August 2021</title>
			<link>http://52.214.119.220/wiki/index.php?title=Sheets_in_Proteins&amp;diff=3435237&amp;oldid=prev</link>
			<description>&lt;p&gt;&lt;/p&gt;

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				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;←Older revision&lt;/td&gt;
				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;Revision as of 11:00, 6 August 2021&lt;/td&gt;
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		&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 2:&lt;/td&gt;
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&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;A β-pleated sheet contains multiple peptide strands that are positioned adjacent to one another as the one shown on the right&amp;lt;ref&amp;gt;This model was hand constructed using HyperChem and setting all phi and psi values to -139&amp;amp;deg; and 135&amp;amp;deg;, respectively.&amp;lt;/ref&amp;gt; (&amp;lt;scene name='Sheets_in_Proteins/Syn_sheet1/2'&amp;gt; (Initial scene)&amp;lt;/scene&amp;gt;).  The planes of the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet2/2'&amp;gt;pleats&amp;lt;/scene&amp;gt; are formed by the planes of the peptide bond.  The alpha carbons of the peptide chain are at the valleys and peaks of the pleats.  The peptides are &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet3/3'&amp;gt;rainbow colored&amp;lt;/scene&amp;gt; (blue amino end changing to red carboxy end) to show that the adjacent peptides are running in opposite directions making the sheet antiparallel.  Another way of detecting the &amp;lt;scene name='43/437754/1/1'&amp;gt;antiparallel sheet&amp;lt;/scene&amp;gt; is by displaying as cartoon.  The adjacent chains align so that &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet4/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; are formed between the imino hydrogens of one chain and the carbonyl oxygens of an adjacent chain.  These hydrogen bonds provide the major attractive force which maintains the sheet structure.  Phi and psi values that permit this alignment in antiparallel sheets have &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet5/1'&amp;gt;median values&amp;lt;/scene&amp;gt; of -139&amp;amp;deg; and +135&amp;amp;deg;, respectively.  The median values for a parallel sheet are -119&amp;amp;deg; and +113&amp;amp;deg;.  &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;A β-pleated sheet contains multiple peptide strands that are positioned adjacent to one another as the one shown on the right&amp;lt;ref&amp;gt;This model was hand constructed using HyperChem and setting all phi and psi values to -139&amp;amp;deg; and 135&amp;amp;deg;, respectively.&amp;lt;/ref&amp;gt; (&amp;lt;scene name='Sheets_in_Proteins/Syn_sheet1/2'&amp;gt; (Initial scene)&amp;lt;/scene&amp;gt;).  The planes of the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet2/2'&amp;gt;pleats&amp;lt;/scene&amp;gt; are formed by the planes of the peptide bond.  The alpha carbons of the peptide chain are at the valleys and peaks of the pleats.  The peptides are &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet3/3'&amp;gt;rainbow colored&amp;lt;/scene&amp;gt; (blue amino end changing to red carboxy end) to show that the adjacent peptides are running in opposite directions making the sheet antiparallel.  Another way of detecting the &amp;lt;scene name='43/437754/1/1'&amp;gt;antiparallel sheet&amp;lt;/scene&amp;gt; is by displaying as cartoon.  The adjacent chains align so that &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet4/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; are formed between the imino hydrogens of one chain and the carbonyl oxygens of an adjacent chain.  These hydrogen bonds provide the major attractive force which maintains the sheet structure.  Phi and psi values that permit this alignment in antiparallel sheets have &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet5/1'&amp;gt;median values&amp;lt;/scene&amp;gt; of -139&amp;amp;deg; and +135&amp;amp;deg;, respectively.  The median values for a parallel sheet are -119&amp;amp;deg; and +113&amp;amp;deg;.  &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;-&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;Twisted &lt;/del&gt;sheets &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;are &lt;/del&gt;found in globular proteins. &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt; &lt;/del&gt;Unlike the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet6/2'&amp;gt;above two types&amp;lt;/scene&amp;gt; of sheets, the valleys and the peaks of a &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl2/2'&amp;gt;twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;This sheet is part of the structure of domain 2 of glycogen phosphorylase (PDB code [[1abb]]).&amp;lt;/ref&amp;gt; do not fall on parallel lines.  Observe that the sheet is &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/4'&amp;gt;parallel&amp;lt;/scene&amp;gt;, and showing &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  Notice that in contrast to the hydrogen bonds of the antiparallel sheet shown above where the bonds were parallel here the bonds are diagonal to each other.   Show &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl5/2'&amp;gt;phi and psi values&amp;lt;/scene&amp;gt; for randomly chosen residues.  There are a wide range of values for both phi and psi, -108&amp;amp;deg; to -142&amp;amp;deg; and +96&amp;amp;deg; to +148&amp;amp;deg;, respectively.  The above sheet shown in the context of &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/5'&amp;gt;domain 2&amp;lt;/scene&amp;gt; of glycogen phosphorylase. An examples of &amp;lt;scene name='Sheets_in_Proteins/1dtg1/2'&amp;gt;antiparallel twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;These sheets are part of the structure of human transferrin n-lobe mutant (PDB code [[1dtg]]).&amp;lt;/ref&amp;gt;.  Showing only the &amp;lt;scene name='Sheets_in_Proteins/1dtg2/2'&amp;gt;sheets&amp;lt;/scene&amp;gt;, and with &amp;lt;scene name='Sheets_in_Proteins/1dtg3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  &amp;lt;scene name='Sheets_in_Proteins/1dtg4/3'&amp;gt; Values&amp;lt;/scene&amp;gt; of phi and psi for randomly chosen residues; these values range from -98&amp;amp;deg; to -178&amp;amp;deg; and from +90&amp;amp;deg; to +167&amp;amp;deg;, respectively.  These ranges overlap the values for the twisted parallel showing that there is no differences in the ranges for the two types of twisted sheets.  Median values for phi and psi are -125&amp;amp;deg; and +140&amp;amp;deg;, respectively.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;Real &lt;/ins&gt;sheets &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;(rather than the simple models shown above) as &lt;/ins&gt;found in globular proteins &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;are &amp;lt;scene name='43/437754/6ssc_antiparallel/1'&amp;gt;twisted&amp;lt;/scene&amp;gt;&lt;/ins&gt;. Unlike the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet6/2'&amp;gt;above two types&amp;lt;/scene&amp;gt; of sheets, the valleys and the peaks of a &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl2/2'&amp;gt;twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;This sheet is part of the structure of domain 2 of glycogen phosphorylase (PDB code [[1abb]]).&amp;lt;/ref&amp;gt; do not fall on parallel lines.  Observe that the sheet is &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/4'&amp;gt;parallel&amp;lt;/scene&amp;gt;, and showing &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  Notice that in contrast to the hydrogen bonds of the antiparallel sheet shown above where the bonds were parallel here the bonds are diagonal to each other.   Show &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl5/2'&amp;gt;phi and psi values&amp;lt;/scene&amp;gt; for randomly chosen residues.  There are a wide range of values for both phi and psi, -108&amp;amp;deg; to -142&amp;amp;deg; and +96&amp;amp;deg; to +148&amp;amp;deg;, respectively.  The above sheet shown in the context of &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/5'&amp;gt;domain 2&amp;lt;/scene&amp;gt; of glycogen phosphorylase. An examples of &amp;lt;scene name='Sheets_in_Proteins/1dtg1/2'&amp;gt;antiparallel twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;These sheets are part of the structure of human transferrin n-lobe mutant (PDB code [[1dtg]]).&amp;lt;/ref&amp;gt;.  Showing only the &amp;lt;scene name='Sheets_in_Proteins/1dtg2/2'&amp;gt;sheets&amp;lt;/scene&amp;gt;, and with &amp;lt;scene name='Sheets_in_Proteins/1dtg3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  &amp;lt;scene name='Sheets_in_Proteins/1dtg4/3'&amp;gt; Values&amp;lt;/scene&amp;gt; of phi and psi for randomly chosen residues; these values range from -98&amp;amp;deg; to -178&amp;amp;deg; and from +90&amp;amp;deg; to +167&amp;amp;deg;, respectively.  These ranges overlap the values for the twisted parallel showing that there is no differences in the ranges for the two types of twisted sheets.  Median values for phi and psi are -125&amp;amp;deg; and +140&amp;amp;deg;, respectively.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;{{Clear}}&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;{{Clear}}&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</description>
			<pubDate>Fri, 06 Aug 2021 11:00:06 GMT</pubDate>			<dc:creator>Karsten Theis</dc:creator>			<comments>http://52.214.119.220/wiki/index.php/Talk:Sheets_in_Proteins</comments>		</item>
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			<title>Karsten Theis: Beta strand moved to Sheets in Proteins over redirect: original title</title>
			<link>http://52.214.119.220/wiki/index.php?title=Sheets_in_Proteins&amp;diff=3071206&amp;oldid=prev</link>
			<description>&lt;p&gt;&lt;a href=&quot;/wiki/index.php/Beta_strand&quot; title=&quot;Beta strand&quot;&gt;Beta strand&lt;/a&gt; moved to &lt;a href=&quot;/wiki/index.php/Sheets_in_Proteins&quot; title=&quot;Sheets in Proteins&quot;&gt;Sheets in Proteins&lt;/a&gt; over redirect: original title&lt;/p&gt;

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				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;←Older revision&lt;/td&gt;
				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;Revision as of 20:16, 20 July 2019&lt;/td&gt;
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			<pubDate>Sat, 20 Jul 2019 20:16:47 GMT</pubDate>			<dc:creator>Karsten Theis</dc:creator>			<comments>http://52.214.119.220/wiki/index.php/Talk:Sheets_in_Proteins</comments>		</item>
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			<title>Karsten Theis: Sheets in Proteins moved to Beta strand: better search results</title>
			<link>http://52.214.119.220/wiki/index.php?title=Sheets_in_Proteins&amp;diff=3071204&amp;oldid=prev</link>
			<description>&lt;p&gt;&lt;a href=&quot;/wiki/index.php/Sheets_in_Proteins&quot; title=&quot;Sheets in Proteins&quot;&gt;Sheets in Proteins&lt;/a&gt; moved to &lt;a href=&quot;/wiki/index.php/Beta_strand&quot; title=&quot;Beta strand&quot;&gt;Beta strand&lt;/a&gt;: better search results&lt;/p&gt;

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				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;←Older revision&lt;/td&gt;
				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;Revision as of 20:16, 20 July 2019&lt;/td&gt;
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			<pubDate>Sat, 20 Jul 2019 20:16:04 GMT</pubDate>			<dc:creator>Karsten Theis</dc:creator>			<comments>http://52.214.119.220/wiki/index.php/Talk:Sheets_in_Proteins</comments>		</item>
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			<title>Eric Martz: /* Notes and References */</title>
			<link>http://52.214.119.220/wiki/index.php?title=Sheets_in_Proteins&amp;diff=2916047&amp;oldid=prev</link>
			<description>&lt;p&gt;&lt;span class=&quot;autocomment&quot;&gt;Notes and References&lt;/span&gt;&lt;/p&gt;

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				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;←Older revision&lt;/td&gt;
				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;Revision as of 22:09, 21 June 2018&lt;/td&gt;
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&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 5:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;{{Clear}}&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;{{Clear}}&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;nbsp;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;nbsp;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;== See Also ==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;nbsp;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;* [[User:Stephen Mills/Secondary Structure: Sheets]]&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt;&amp;nbsp;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;* [[Secondary structure]]&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;== Notes and References ==&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;== Notes and References ==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;lt;references/&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;lt;references/&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</description>
			<pubDate>Thu, 21 Jun 2018 22:09:54 GMT</pubDate>			<dc:creator>Eric Martz</dc:creator>			<comments>http://52.214.119.220/wiki/index.php/Talk:Sheets_in_Proteins</comments>		</item>
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			<title>Jaime Prilusky at 15:33, 21 June 2016</title>
			<link>http://52.214.119.220/wiki/index.php?title=Sheets_in_Proteins&amp;diff=2610449&amp;oldid=prev</link>
			<description>&lt;p&gt;&lt;/p&gt;

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				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;←Older revision&lt;/td&gt;
				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;Revision as of 15:33, 21 June 2016&lt;/td&gt;
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&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;lt;Structure load='Silk 64.mol' size='500' frame='true' align='right' caption='Structures of Sheets' scene='Sheets_in_Proteins/Syn_sheet1/2' /&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;lt;Structure load='Silk 64.mol' size='500' frame='true' align='right' caption='Structures of Sheets' scene='Sheets_in_Proteins/Syn_sheet1/2' /&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;-&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;A β-pleated sheet contains multiple peptide strands that are positioned adjacent to one another as the one shown on the right&amp;lt;ref&amp;gt;This model was hand constructed using HyperChem and setting all phi and psi values to -139&amp;amp;deg; and 135&amp;amp;deg;, respectively.&amp;lt;/ref&amp;gt; (&amp;lt;scene name='Sheets_in_Proteins/Syn_sheet1/2'&amp;gt; (Initial scene)&amp;lt;/scene&amp;gt;).  The planes of the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet2/2'&amp;gt;pleats&amp;lt;/scene&amp;gt; are formed by the planes of the peptide bond.  The alpha carbons of the peptide chain are at the valleys and peaks of the pleats.  The peptides are &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet3/3'&amp;gt;rainbow colored&amp;lt;/scene&amp;gt; (blue amino end changing to red carboxy end) to show that the adjacent peptides are running in opposite directions making the sheet antiparallel.  Another way of detecting the &amp;lt;scene name='&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;Sheets_in_Proteins&lt;/del&gt;/&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;Syn_sheet7&lt;/del&gt;/1'&amp;gt;antiparallel sheet&amp;lt;/scene&amp;gt; is by displaying as cartoon.  The adjacent chains align so that &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet4/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; are formed between the imino hydrogens of one chain and the carbonyl oxygens of an adjacent chain.  These hydrogen bonds provide the major attractive force which maintains the sheet structure.  Phi and psi values that permit this alignment in antiparallel sheets have &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet5/1'&amp;gt;median values&amp;lt;/scene&amp;gt; of -139&amp;amp;deg; and +135&amp;amp;deg;, respectively.  The median values for a parallel sheet are -119&amp;amp;deg; and +113&amp;amp;deg;.  &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;A β-pleated sheet contains multiple peptide strands that are positioned adjacent to one another as the one shown on the right&amp;lt;ref&amp;gt;This model was hand constructed using HyperChem and setting all phi and psi values to -139&amp;amp;deg; and 135&amp;amp;deg;, respectively.&amp;lt;/ref&amp;gt; (&amp;lt;scene name='Sheets_in_Proteins/Syn_sheet1/2'&amp;gt; (Initial scene)&amp;lt;/scene&amp;gt;).  The planes of the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet2/2'&amp;gt;pleats&amp;lt;/scene&amp;gt; are formed by the planes of the peptide bond.  The alpha carbons of the peptide chain are at the valleys and peaks of the pleats.  The peptides are &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet3/3'&amp;gt;rainbow colored&amp;lt;/scene&amp;gt; (blue amino end changing to red carboxy end) to show that the adjacent peptides are running in opposite directions making the sheet antiparallel.  Another way of detecting the &amp;lt;scene name='&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;43&lt;/ins&gt;/&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;437754/1&lt;/ins&gt;/1'&amp;gt;antiparallel sheet&amp;lt;/scene&amp;gt; is by displaying as cartoon.  The adjacent chains align so that &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet4/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; are formed between the imino hydrogens of one chain and the carbonyl oxygens of an adjacent chain.  These hydrogen bonds provide the major attractive force which maintains the sheet structure.  Phi and psi values that permit this alignment in antiparallel sheets have &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet5/1'&amp;gt;median values&amp;lt;/scene&amp;gt; of -139&amp;amp;deg; and +135&amp;amp;deg;, respectively.  The median values for a parallel sheet are -119&amp;amp;deg; and +113&amp;amp;deg;.  &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;Twisted sheets are found in globular proteins.  Unlike the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet6/2'&amp;gt;above two types&amp;lt;/scene&amp;gt; of sheets, the valleys and the peaks of a &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl2/2'&amp;gt;twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;This sheet is part of the structure of domain 2 of glycogen phosphorylase (PDB code [[1abb]]).&amp;lt;/ref&amp;gt; do not fall on parallel lines.  Observe that the sheet is &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/4'&amp;gt;parallel&amp;lt;/scene&amp;gt;, and showing &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  Notice that in contrast to the hydrogen bonds of the antiparallel sheet shown above where the bonds were parallel here the bonds are diagonal to each other.   Show &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl5/2'&amp;gt;phi and psi values&amp;lt;/scene&amp;gt; for randomly chosen residues.  There are a wide range of values for both phi and psi, -108&amp;amp;deg; to -142&amp;amp;deg; and +96&amp;amp;deg; to +148&amp;amp;deg;, respectively.  The above sheet shown in the context of &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/5'&amp;gt;domain 2&amp;lt;/scene&amp;gt; of glycogen phosphorylase. An examples of &amp;lt;scene name='Sheets_in_Proteins/1dtg1/2'&amp;gt;antiparallel twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;These sheets are part of the structure of human transferrin n-lobe mutant (PDB code [[1dtg]]).&amp;lt;/ref&amp;gt;.  Showing only the &amp;lt;scene name='Sheets_in_Proteins/1dtg2/2'&amp;gt;sheets&amp;lt;/scene&amp;gt;, and with &amp;lt;scene name='Sheets_in_Proteins/1dtg3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  &amp;lt;scene name='Sheets_in_Proteins/1dtg4/3'&amp;gt; Values&amp;lt;/scene&amp;gt; of phi and psi for randomly chosen residues; these values range from -98&amp;amp;deg; to -178&amp;amp;deg; and from +90&amp;amp;deg; to +167&amp;amp;deg;, respectively.  These ranges overlap the values for the twisted parallel showing that there is no differences in the ranges for the two types of twisted sheets.  Median values for phi and psi are -125&amp;amp;deg; and +140&amp;amp;deg;, respectively.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;Twisted sheets are found in globular proteins.  Unlike the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet6/2'&amp;gt;above two types&amp;lt;/scene&amp;gt; of sheets, the valleys and the peaks of a &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl2/2'&amp;gt;twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;This sheet is part of the structure of domain 2 of glycogen phosphorylase (PDB code [[1abb]]).&amp;lt;/ref&amp;gt; do not fall on parallel lines.  Observe that the sheet is &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/4'&amp;gt;parallel&amp;lt;/scene&amp;gt;, and showing &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  Notice that in contrast to the hydrogen bonds of the antiparallel sheet shown above where the bonds were parallel here the bonds are diagonal to each other.   Show &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl5/2'&amp;gt;phi and psi values&amp;lt;/scene&amp;gt; for randomly chosen residues.  There are a wide range of values for both phi and psi, -108&amp;amp;deg; to -142&amp;amp;deg; and +96&amp;amp;deg; to +148&amp;amp;deg;, respectively.  The above sheet shown in the context of &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/5'&amp;gt;domain 2&amp;lt;/scene&amp;gt; of glycogen phosphorylase. An examples of &amp;lt;scene name='Sheets_in_Proteins/1dtg1/2'&amp;gt;antiparallel twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;These sheets are part of the structure of human transferrin n-lobe mutant (PDB code [[1dtg]]).&amp;lt;/ref&amp;gt;.  Showing only the &amp;lt;scene name='Sheets_in_Proteins/1dtg2/2'&amp;gt;sheets&amp;lt;/scene&amp;gt;, and with &amp;lt;scene name='Sheets_in_Proteins/1dtg3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  &amp;lt;scene name='Sheets_in_Proteins/1dtg4/3'&amp;gt; Values&amp;lt;/scene&amp;gt; of phi and psi for randomly chosen residues; these values range from -98&amp;amp;deg; to -178&amp;amp;deg; and from +90&amp;amp;deg; to +167&amp;amp;deg;, respectively.  These ranges overlap the values for the twisted parallel showing that there is no differences in the ranges for the two types of twisted sheets.  Median values for phi and psi are -125&amp;amp;deg; and +140&amp;amp;deg;, respectively.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</description>
			<pubDate>Tue, 21 Jun 2016 15:33:33 GMT</pubDate>			<dc:creator>Jaime Prilusky</dc:creator>			<comments>http://52.214.119.220/wiki/index.php/Talk:Sheets_in_Proteins</comments>		</item>
		<item>
			<title>Karl Oberholser at 16:11, 21 June 2012</title>
			<link>http://52.214.119.220/wiki/index.php?title=Sheets_in_Proteins&amp;diff=1410368&amp;oldid=prev</link>
			<description>&lt;p&gt;&lt;/p&gt;

			&lt;table style=&quot;background-color: white; color:black;&quot;&gt;
			&lt;col class='diff-marker' /&gt;
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				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;←Older revision&lt;/td&gt;
				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;Revision as of 16:11, 21 June 2012&lt;/td&gt;
			&lt;/tr&gt;
		&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 2:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 2:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;A β-pleated sheet contains multiple peptide strands that are positioned adjacent to one another as the one shown on the right&amp;lt;ref&amp;gt;This model was hand constructed using HyperChem and setting all phi and psi values to -139&amp;amp;deg; and 135&amp;amp;deg;, respectively.&amp;lt;/ref&amp;gt; (&amp;lt;scene name='Sheets_in_Proteins/Syn_sheet1/2'&amp;gt; (Initial scene)&amp;lt;/scene&amp;gt;).  The planes of the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet2/2'&amp;gt;pleats&amp;lt;/scene&amp;gt; are formed by the planes of the peptide bond.  The alpha carbons of the peptide chain are at the valleys and peaks of the pleats.  The peptides are &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet3/3'&amp;gt;rainbow colored&amp;lt;/scene&amp;gt; (blue amino end changing to red carboxy end) to show that the adjacent peptides are running in opposite directions making the sheet antiparallel.  Another way of detecting the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet7/1'&amp;gt;antiparallel sheet&amp;lt;/scene&amp;gt; is by displaying as cartoon.  The adjacent chains align so that &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet4/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; are formed between the imino hydrogens of one chain and the carbonyl oxygens of an adjacent chain.  These hydrogen bonds provide the major attractive force which maintains the sheet structure.  Phi and psi values that permit this alignment in antiparallel sheets have &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet5/1'&amp;gt;median values&amp;lt;/scene&amp;gt; of -139&amp;amp;deg; and +135&amp;amp;deg;, respectively.  The median values for a parallel sheet are -119&amp;amp;deg; and +113&amp;amp;deg;.  &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;A β-pleated sheet contains multiple peptide strands that are positioned adjacent to one another as the one shown on the right&amp;lt;ref&amp;gt;This model was hand constructed using HyperChem and setting all phi and psi values to -139&amp;amp;deg; and 135&amp;amp;deg;, respectively.&amp;lt;/ref&amp;gt; (&amp;lt;scene name='Sheets_in_Proteins/Syn_sheet1/2'&amp;gt; (Initial scene)&amp;lt;/scene&amp;gt;).  The planes of the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet2/2'&amp;gt;pleats&amp;lt;/scene&amp;gt; are formed by the planes of the peptide bond.  The alpha carbons of the peptide chain are at the valleys and peaks of the pleats.  The peptides are &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet3/3'&amp;gt;rainbow colored&amp;lt;/scene&amp;gt; (blue amino end changing to red carboxy end) to show that the adjacent peptides are running in opposite directions making the sheet antiparallel.  Another way of detecting the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet7/1'&amp;gt;antiparallel sheet&amp;lt;/scene&amp;gt; is by displaying as cartoon.  The adjacent chains align so that &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet4/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; are formed between the imino hydrogens of one chain and the carbonyl oxygens of an adjacent chain.  These hydrogen bonds provide the major attractive force which maintains the sheet structure.  Phi and psi values that permit this alignment in antiparallel sheets have &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet5/1'&amp;gt;median values&amp;lt;/scene&amp;gt; of -139&amp;amp;deg; and +135&amp;amp;deg;, respectively.  The median values for a parallel sheet are -119&amp;amp;deg; and +113&amp;amp;deg;.  &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;-&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;Twisted sheets are found in globular proteins.  Unlike the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet6/2'&amp;gt;above two types&amp;lt;/scene&amp;gt; of sheets, the valleys and the peaks of a &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl2/2'&amp;gt;twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;This sheet is part of the structure of domain 2 of glycogen phosphorylase (PDB code [[1abb]]).&amp;lt;/ref&amp;gt; do not fall on parallel lines.  Observe that the sheet is &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/4'&amp;gt;parallel&amp;lt;/scene&amp;gt;, and showing &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  Notice that in contrast to the hydrogen bonds of the antiparallel sheet shown above where the bonds were parallel here the bonds are diagonal to each other.   Show &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl5/2'&amp;gt;phi and psi values&amp;lt;/scene&amp;gt; for randomly chosen residues.  There are a wide range of values for both phi and psi, -108&amp;amp;deg; to -142&amp;amp;deg; and +96&amp;amp;deg; to +148&amp;amp;deg;, respectively.  The above sheet shown in the context of &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/5'&amp;gt;domain 2&amp;lt;/scene&amp;gt; of glycogen phosphorylase. An examples of &amp;lt;scene name='Sheets_in_Proteins/1dtg1/&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;1&lt;/del&gt;'&amp;gt;antiparallel twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;These sheets are part of the structure of human transferrin n-lobe mutant (PDB code [[1dtg]]).&amp;lt;/ref&amp;gt;.  Showing only the &amp;lt;scene name='Sheets_in_Proteins/1dtg2/2'&amp;gt;sheets&amp;lt;/scene&amp;gt;, and with &amp;lt;scene name='Sheets_in_Proteins/1dtg3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  &amp;lt;scene name='Sheets_in_Proteins/1dtg4/3'&amp;gt; Values&amp;lt;/scene&amp;gt; of phi and psi for randomly chosen residues; these values range from -98&amp;amp;deg; to -178&amp;amp;deg; and from +90&amp;amp;deg; to +167&amp;amp;deg;, respectively.  These ranges overlap the values for the twisted parallel showing that there is no differences in the ranges for the two types of twisted sheets.  Median values for phi and psi are -125&amp;amp;deg; and +140&amp;amp;deg;, respectively.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;Twisted sheets are found in globular proteins.  Unlike the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet6/2'&amp;gt;above two types&amp;lt;/scene&amp;gt; of sheets, the valleys and the peaks of a &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl2/2'&amp;gt;twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;This sheet is part of the structure of domain 2 of glycogen phosphorylase (PDB code [[1abb]]).&amp;lt;/ref&amp;gt; do not fall on parallel lines.  Observe that the sheet is &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/4'&amp;gt;parallel&amp;lt;/scene&amp;gt;, and showing &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  Notice that in contrast to the hydrogen bonds of the antiparallel sheet shown above where the bonds were parallel here the bonds are diagonal to each other.   Show &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl5/2'&amp;gt;phi and psi values&amp;lt;/scene&amp;gt; for randomly chosen residues.  There are a wide range of values for both phi and psi, -108&amp;amp;deg; to -142&amp;amp;deg; and +96&amp;amp;deg; to +148&amp;amp;deg;, respectively.  The above sheet shown in the context of &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/5'&amp;gt;domain 2&amp;lt;/scene&amp;gt; of glycogen phosphorylase. An examples of &amp;lt;scene name='Sheets_in_Proteins/1dtg1/&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;2&lt;/ins&gt;'&amp;gt;antiparallel twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;These sheets are part of the structure of human transferrin n-lobe mutant (PDB code [[1dtg]]).&amp;lt;/ref&amp;gt;.  Showing only the &amp;lt;scene name='Sheets_in_Proteins/1dtg2/2'&amp;gt;sheets&amp;lt;/scene&amp;gt;, and with &amp;lt;scene name='Sheets_in_Proteins/1dtg3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  &amp;lt;scene name='Sheets_in_Proteins/1dtg4/3'&amp;gt; Values&amp;lt;/scene&amp;gt; of phi and psi for randomly chosen residues; these values range from -98&amp;amp;deg; to -178&amp;amp;deg; and from +90&amp;amp;deg; to +167&amp;amp;deg;, respectively.  These ranges overlap the values for the twisted parallel showing that there is no differences in the ranges for the two types of twisted sheets.  Median values for phi and psi are -125&amp;amp;deg; and +140&amp;amp;deg;, respectively.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;{{Clear}}&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;{{Clear}}&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</description>
			<pubDate>Thu, 21 Jun 2012 16:11:27 GMT</pubDate>			<dc:creator>Karl Oberholser</dc:creator>			<comments>http://52.214.119.220/wiki/index.php/Talk:Sheets_in_Proteins</comments>		</item>
		<item>
			<title>Karl Oberholser at 16:01, 21 June 2012</title>
			<link>http://52.214.119.220/wiki/index.php?title=Sheets_in_Proteins&amp;diff=1410367&amp;oldid=prev</link>
			<description>&lt;p&gt;&lt;/p&gt;

			&lt;table style=&quot;background-color: white; color:black;&quot;&gt;
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				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;←Older revision&lt;/td&gt;
				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;Revision as of 16:01, 21 June 2012&lt;/td&gt;
			&lt;/tr&gt;
		&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 2:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 2:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;A β-pleated sheet contains multiple peptide strands that are positioned adjacent to one another as the one shown on the right&amp;lt;ref&amp;gt;This model was hand constructed using HyperChem and setting all phi and psi values to -139&amp;amp;deg; and 135&amp;amp;deg;, respectively.&amp;lt;/ref&amp;gt; (&amp;lt;scene name='Sheets_in_Proteins/Syn_sheet1/2'&amp;gt; (Initial scene)&amp;lt;/scene&amp;gt;).  The planes of the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet2/2'&amp;gt;pleats&amp;lt;/scene&amp;gt; are formed by the planes of the peptide bond.  The alpha carbons of the peptide chain are at the valleys and peaks of the pleats.  The peptides are &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet3/3'&amp;gt;rainbow colored&amp;lt;/scene&amp;gt; (blue amino end changing to red carboxy end) to show that the adjacent peptides are running in opposite directions making the sheet antiparallel.  Another way of detecting the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet7/1'&amp;gt;antiparallel sheet&amp;lt;/scene&amp;gt; is by displaying as cartoon.  The adjacent chains align so that &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet4/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; are formed between the imino hydrogens of one chain and the carbonyl oxygens of an adjacent chain.  These hydrogen bonds provide the major attractive force which maintains the sheet structure.  Phi and psi values that permit this alignment in antiparallel sheets have &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet5/1'&amp;gt;median values&amp;lt;/scene&amp;gt; of -139&amp;amp;deg; and +135&amp;amp;deg;, respectively.  The median values for a parallel sheet are -119&amp;amp;deg; and +113&amp;amp;deg;.  &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;A β-pleated sheet contains multiple peptide strands that are positioned adjacent to one another as the one shown on the right&amp;lt;ref&amp;gt;This model was hand constructed using HyperChem and setting all phi and psi values to -139&amp;amp;deg; and 135&amp;amp;deg;, respectively.&amp;lt;/ref&amp;gt; (&amp;lt;scene name='Sheets_in_Proteins/Syn_sheet1/2'&amp;gt; (Initial scene)&amp;lt;/scene&amp;gt;).  The planes of the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet2/2'&amp;gt;pleats&amp;lt;/scene&amp;gt; are formed by the planes of the peptide bond.  The alpha carbons of the peptide chain are at the valleys and peaks of the pleats.  The peptides are &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet3/3'&amp;gt;rainbow colored&amp;lt;/scene&amp;gt; (blue amino end changing to red carboxy end) to show that the adjacent peptides are running in opposite directions making the sheet antiparallel.  Another way of detecting the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet7/1'&amp;gt;antiparallel sheet&amp;lt;/scene&amp;gt; is by displaying as cartoon.  The adjacent chains align so that &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet4/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; are formed between the imino hydrogens of one chain and the carbonyl oxygens of an adjacent chain.  These hydrogen bonds provide the major attractive force which maintains the sheet structure.  Phi and psi values that permit this alignment in antiparallel sheets have &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet5/1'&amp;gt;median values&amp;lt;/scene&amp;gt; of -139&amp;amp;deg; and +135&amp;amp;deg;, respectively.  The median values for a parallel sheet are -119&amp;amp;deg; and +113&amp;amp;deg;.  &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;-&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;Twisted sheets are found in globular proteins.  Unlike the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet6/2'&amp;gt;above two types&amp;lt;/scene&amp;gt; of sheets, the valleys and the peaks of a &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl2/2'&amp;gt;twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;This sheet is part of the structure of domain 2 of glycogen phosphorylase (PDB code [[1abb]]).&amp;lt;/ref&amp;gt; do not fall on parallel lines.  Observe that the sheet is &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/4'&amp;gt;parallel&amp;lt;/scene&amp;gt;, and showing &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  Notice that in contrast to the hydrogen bonds of the antiparallel sheet shown above where the bonds were parallel here the bonds are diagonal to each other.   Show &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl5/2'&amp;gt;phi and psi values&amp;lt;/scene&amp;gt; for randomly chosen residues.  There are a wide range of values for both phi and psi, -108&amp;amp;deg; to -142&amp;amp;deg; and +96&amp;amp;deg; to +148&amp;amp;deg;, respectively.  The above sheet shown in the context of &amp;lt;scene name='Sheets_in_Proteins/&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;Gly_phosyl4&lt;/del&gt;/&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;1&lt;/del&gt;'&amp;gt;domain 2&amp;lt;/scene&amp;gt; of glycogen phosphorylase. &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;There are also &lt;/del&gt;examples of &amp;lt;scene name='Sheets_in_Proteins/1dtg1/1'&amp;gt;antiparallel &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;sheets&lt;/del&gt;&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;These sheets are part of the structure of human transferrin n-lobe mutant (PDB code [[1dtg]]).&amp;lt;/ref&amp;gt;.  Showing only the &amp;lt;scene name='Sheets_in_Proteins/1dtg2/2'&amp;gt;sheets&amp;lt;/scene&amp;gt;, and with &amp;lt;scene name='Sheets_in_Proteins/1dtg3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  &amp;lt;scene name='Sheets_in_Proteins/1dtg4/3'&amp;gt; Values&amp;lt;/scene&amp;gt; of phi and psi for randomly chosen residues; these values range from -98&amp;amp;deg; to -178&amp;amp;deg; and from +90&amp;amp;deg; to +167&amp;amp;deg;, respectively.  These ranges overlap the values for the twisted parallel showing that there is no differences in the ranges for the two types of twisted sheets.  Median values for phi and psi are -125&amp;amp;deg; and +140&amp;amp;deg;, respectively.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;Twisted sheets are found in globular proteins.  Unlike the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet6/2'&amp;gt;above two types&amp;lt;/scene&amp;gt; of sheets, the valleys and the peaks of a &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl2/2'&amp;gt;twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;This sheet is part of the structure of domain 2 of glycogen phosphorylase (PDB code [[1abb]]).&amp;lt;/ref&amp;gt; do not fall on parallel lines.  Observe that the sheet is &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/4'&amp;gt;parallel&amp;lt;/scene&amp;gt;, and showing &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  Notice that in contrast to the hydrogen bonds of the antiparallel sheet shown above where the bonds were parallel here the bonds are diagonal to each other.   Show &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl5/2'&amp;gt;phi and psi values&amp;lt;/scene&amp;gt; for randomly chosen residues.  There are a wide range of values for both phi and psi, -108&amp;amp;deg; to -142&amp;amp;deg; and +96&amp;amp;deg; to +148&amp;amp;deg;, respectively.  The above sheet shown in the context of &amp;lt;scene name='Sheets_in_Proteins/&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;Gly_phosyl&lt;/ins&gt;/&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;5&lt;/ins&gt;'&amp;gt;domain 2&amp;lt;/scene&amp;gt; of glycogen phosphorylase. &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;An &lt;/ins&gt;examples of &amp;lt;scene name='Sheets_in_Proteins/1dtg1/1'&amp;gt;antiparallel &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;twisted sheet&lt;/ins&gt;&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;These sheets are part of the structure of human transferrin n-lobe mutant (PDB code [[1dtg]]).&amp;lt;/ref&amp;gt;.  Showing only the &amp;lt;scene name='Sheets_in_Proteins/1dtg2/2'&amp;gt;sheets&amp;lt;/scene&amp;gt;, and with &amp;lt;scene name='Sheets_in_Proteins/1dtg3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  &amp;lt;scene name='Sheets_in_Proteins/1dtg4/3'&amp;gt; Values&amp;lt;/scene&amp;gt; of phi and psi for randomly chosen residues; these values range from -98&amp;amp;deg; to -178&amp;amp;deg; and from +90&amp;amp;deg; to +167&amp;amp;deg;, respectively.  These ranges overlap the values for the twisted parallel showing that there is no differences in the ranges for the two types of twisted sheets.  Median values for phi and psi are -125&amp;amp;deg; and +140&amp;amp;deg;, respectively.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;{{Clear}}&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;{{Clear}}&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</description>
			<pubDate>Thu, 21 Jun 2012 16:01:00 GMT</pubDate>			<dc:creator>Karl Oberholser</dc:creator>			<comments>http://52.214.119.220/wiki/index.php/Talk:Sheets_in_Proteins</comments>		</item>
		<item>
			<title>Karl Oberholser at 15:32, 15 June 2012</title>
			<link>http://52.214.119.220/wiki/index.php?title=Sheets_in_Proteins&amp;diff=1407747&amp;oldid=prev</link>
			<description>&lt;p&gt;&lt;/p&gt;

			&lt;table style=&quot;background-color: white; color:black;&quot;&gt;
			&lt;col class='diff-marker' /&gt;
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				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;←Older revision&lt;/td&gt;
				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;Revision as of 15:32, 15 June 2012&lt;/td&gt;
			&lt;/tr&gt;
		&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;lt;Structure load='Silk 64.mol' size='500' frame='true' align='right' caption='Structures of Sheets' scene='Sheets_in_Proteins/Syn_sheet1/2' /&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;lt;Structure load='Silk 64.mol' size='500' frame='true' align='right' caption='Structures of Sheets' scene='Sheets_in_Proteins/Syn_sheet1/2' /&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;-&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;A β-pleated sheet contains multiple peptide strands that are positioned adjacent to one another as the one shown on the right&amp;lt;ref&amp;gt;This model was hand constructed using HyperChem and setting all &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;psi and &lt;/del&gt;phi values to &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;135&lt;/del&gt;&amp;amp;deg; and &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-139&lt;/del&gt;&amp;amp;deg;, respectively.&amp;lt;/ref&amp;gt; (&amp;lt;scene name='Sheets_in_Proteins/Syn_sheet1/2'&amp;gt; (Initial scene)&amp;lt;/scene&amp;gt;).  The planes of the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet2/2'&amp;gt;pleats&amp;lt;/scene&amp;gt; are formed by the planes of the peptide bond.  The alpha carbons of the peptide chain are at the valleys and peaks of the pleats.  The peptides are &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet3/3'&amp;gt;rainbow colored&amp;lt;/scene&amp;gt; (blue amino end changing to red carboxy end) to show that the adjacent peptides are running in opposite directions making the sheet antiparallel.  Another way of detecting the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet7/1'&amp;gt;antiparallel sheet&amp;lt;/scene&amp;gt; is by displaying as cartoon.  The adjacent chains align so that &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet4/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; are formed between the imino hydrogens of one chain and the carbonyl oxygens of an adjacent chain.  These hydrogen bonds provide the major attractive force which maintains the sheet structure.  Phi and psi values that permit this alignment in antiparallel sheets have &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet5/1'&amp;gt;median values&amp;lt;/scene&amp;gt; of -139&amp;amp;deg; and +135&amp;amp;deg;, respectively.  The median values for a parallel sheet are -119&amp;amp;deg; and +113&amp;amp;deg;.  &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;A β-pleated sheet contains multiple peptide strands that are positioned adjacent to one another as the one shown on the right&amp;lt;ref&amp;gt;This model was hand constructed using HyperChem and setting all phi &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;and psi &lt;/ins&gt;values to &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-139&lt;/ins&gt;&amp;amp;deg; and &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;135&lt;/ins&gt;&amp;amp;deg;, respectively.&amp;lt;/ref&amp;gt; (&amp;lt;scene name='Sheets_in_Proteins/Syn_sheet1/2'&amp;gt; (Initial scene)&amp;lt;/scene&amp;gt;).  The planes of the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet2/2'&amp;gt;pleats&amp;lt;/scene&amp;gt; are formed by the planes of the peptide bond.  The alpha carbons of the peptide chain are at the valleys and peaks of the pleats.  The peptides are &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet3/3'&amp;gt;rainbow colored&amp;lt;/scene&amp;gt; (blue amino end changing to red carboxy end) to show that the adjacent peptides are running in opposite directions making the sheet antiparallel.  Another way of detecting the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet7/1'&amp;gt;antiparallel sheet&amp;lt;/scene&amp;gt; is by displaying as cartoon.  The adjacent chains align so that &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet4/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; are formed between the imino hydrogens of one chain and the carbonyl oxygens of an adjacent chain.  These hydrogen bonds provide the major attractive force which maintains the sheet structure.  Phi and psi values that permit this alignment in antiparallel sheets have &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet5/1'&amp;gt;median values&amp;lt;/scene&amp;gt; of -139&amp;amp;deg; and +135&amp;amp;deg;, respectively.  The median values for a parallel sheet are -119&amp;amp;deg; and +113&amp;amp;deg;.  &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;Twisted sheets are found in globular proteins.  Unlike the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet6/2'&amp;gt;above two types&amp;lt;/scene&amp;gt; of sheets, the valleys and the peaks of a &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl2/2'&amp;gt;twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;This sheet is part of the structure of domain 2 of glycogen phosphorylase (PDB code [[1abb]]).&amp;lt;/ref&amp;gt; do not fall on parallel lines.  Observe that the sheet is &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/4'&amp;gt;parallel&amp;lt;/scene&amp;gt;, and showing &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  Notice that in contrast to the hydrogen bonds of the antiparallel sheet shown above where the bonds were parallel here the bonds are diagonal to each other.   Show &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl5/2'&amp;gt;phi and psi values&amp;lt;/scene&amp;gt; for randomly chosen residues.  There are a wide range of values for both phi and psi, -108&amp;amp;deg; to -142&amp;amp;deg; and +96&amp;amp;deg; to +148&amp;amp;deg;, respectively.  The above sheet shown in the context of &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl4/1'&amp;gt;domain 2&amp;lt;/scene&amp;gt; of glycogen phosphorylase. There are also examples of &amp;lt;scene name='Sheets_in_Proteins/1dtg1/1'&amp;gt;antiparallel sheets&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;These sheets are part of the structure of human transferrin n-lobe mutant (PDB code [[1dtg]]).&amp;lt;/ref&amp;gt;.  Showing only the &amp;lt;scene name='Sheets_in_Proteins/1dtg2/2'&amp;gt;sheets&amp;lt;/scene&amp;gt;, and with &amp;lt;scene name='Sheets_in_Proteins/1dtg3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  &amp;lt;scene name='Sheets_in_Proteins/1dtg4/3'&amp;gt; Values&amp;lt;/scene&amp;gt; of phi and psi for randomly chosen residues; these values range from -98&amp;amp;deg; to -178&amp;amp;deg; and from +90&amp;amp;deg; to +167&amp;amp;deg;, respectively.  These ranges overlap the values for the twisted parallel showing that there is no differences in the ranges for the two types of twisted sheets.  Median values for phi and psi are -125&amp;amp;deg; and +140&amp;amp;deg;, respectively.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;Twisted sheets are found in globular proteins.  Unlike the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet6/2'&amp;gt;above two types&amp;lt;/scene&amp;gt; of sheets, the valleys and the peaks of a &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl2/2'&amp;gt;twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;This sheet is part of the structure of domain 2 of glycogen phosphorylase (PDB code [[1abb]]).&amp;lt;/ref&amp;gt; do not fall on parallel lines.  Observe that the sheet is &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/4'&amp;gt;parallel&amp;lt;/scene&amp;gt;, and showing &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  Notice that in contrast to the hydrogen bonds of the antiparallel sheet shown above where the bonds were parallel here the bonds are diagonal to each other.   Show &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl5/2'&amp;gt;phi and psi values&amp;lt;/scene&amp;gt; for randomly chosen residues.  There are a wide range of values for both phi and psi, -108&amp;amp;deg; to -142&amp;amp;deg; and +96&amp;amp;deg; to +148&amp;amp;deg;, respectively.  The above sheet shown in the context of &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl4/1'&amp;gt;domain 2&amp;lt;/scene&amp;gt; of glycogen phosphorylase. There are also examples of &amp;lt;scene name='Sheets_in_Proteins/1dtg1/1'&amp;gt;antiparallel sheets&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;These sheets are part of the structure of human transferrin n-lobe mutant (PDB code [[1dtg]]).&amp;lt;/ref&amp;gt;.  Showing only the &amp;lt;scene name='Sheets_in_Proteins/1dtg2/2'&amp;gt;sheets&amp;lt;/scene&amp;gt;, and with &amp;lt;scene name='Sheets_in_Proteins/1dtg3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  &amp;lt;scene name='Sheets_in_Proteins/1dtg4/3'&amp;gt; Values&amp;lt;/scene&amp;gt; of phi and psi for randomly chosen residues; these values range from -98&amp;amp;deg; to -178&amp;amp;deg; and from +90&amp;amp;deg; to +167&amp;amp;deg;, respectively.  These ranges overlap the values for the twisted parallel showing that there is no differences in the ranges for the two types of twisted sheets.  Median values for phi and psi are -125&amp;amp;deg; and +140&amp;amp;deg;, respectively.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</description>
			<pubDate>Fri, 15 Jun 2012 15:32:18 GMT</pubDate>			<dc:creator>Karl Oberholser</dc:creator>			<comments>http://52.214.119.220/wiki/index.php/Talk:Sheets_in_Proteins</comments>		</item>
		<item>
			<title>Karl Oberholser at 15:28, 15 June 2012</title>
			<link>http://52.214.119.220/wiki/index.php?title=Sheets_in_Proteins&amp;diff=1407746&amp;oldid=prev</link>
			<description>&lt;p&gt;&lt;/p&gt;

			&lt;table style=&quot;background-color: white; color:black;&quot;&gt;
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				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;←Older revision&lt;/td&gt;
				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;Revision as of 15:28, 15 June 2012&lt;/td&gt;
			&lt;/tr&gt;
		&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;lt;Structure load='Silk 64.mol' size='500' frame='true' align='right' caption='Structures of Sheets' scene='Sheets_in_Proteins/Syn_sheet1/2' /&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;lt;Structure load='Silk 64.mol' size='500' frame='true' align='right' caption='Structures of Sheets' scene='Sheets_in_Proteins/Syn_sheet1/2' /&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;-&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;A β-pleated sheet contains multiple peptide strands that are positioned adjacent to one another as the one shown on the right&amp;lt;ref&amp;gt;This model was hand constructed using HyperChem and setting all psi and phi values to 135&amp;amp;deg; and -139&amp;amp;deg;, respectively.&amp;lt;/ref&amp;gt; (&amp;lt;scene name='Sheets_in_Proteins/Syn_sheet1/2'&amp;gt; (Initial scene)&amp;lt;/scene&amp;gt;).  The planes of the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet2/2'&amp;gt;pleats&amp;lt;/scene&amp;gt; are formed by the planes of the peptide bond.  The alpha carbons of the peptide chain are at the valleys and peaks of the pleats.  The peptides are &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet3/3'&amp;gt;rainbow colored&amp;lt;/scene&amp;gt; (blue amino end changing to red carboxy end) to show that the adjacent peptides are running in opposite directions making the sheet antiparallel.  Another way of detecting the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet7/1'&amp;gt;antiparallel sheet&amp;lt;/scene&amp;gt; is by displaying as cartoon.  The adjacent chains align so that &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet4/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; are formed between the imino hydrogens of one chain and the carbonyl oxygens of an adjacent chain.  These hydrogen bonds provide the major attractive force which maintains the sheet structure.  &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;Psi &lt;/del&gt;and &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;phi &lt;/del&gt;values that permit this alignment in antiparallel sheets have &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet5/1'&amp;gt;median values&amp;lt;/scene&amp;gt; of &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;+135&lt;/del&gt;&amp;amp;deg; and &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-139&lt;/del&gt;&amp;amp;deg;, respectively.  The median values for a parallel sheet are &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;+113&lt;/del&gt;&amp;amp;deg; and &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-119&lt;/del&gt;&amp;amp;deg;.  &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;A β-pleated sheet contains multiple peptide strands that are positioned adjacent to one another as the one shown on the right&amp;lt;ref&amp;gt;This model was hand constructed using HyperChem and setting all psi and phi values to 135&amp;amp;deg; and -139&amp;amp;deg;, respectively.&amp;lt;/ref&amp;gt; (&amp;lt;scene name='Sheets_in_Proteins/Syn_sheet1/2'&amp;gt; (Initial scene)&amp;lt;/scene&amp;gt;).  The planes of the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet2/2'&amp;gt;pleats&amp;lt;/scene&amp;gt; are formed by the planes of the peptide bond.  The alpha carbons of the peptide chain are at the valleys and peaks of the pleats.  The peptides are &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet3/3'&amp;gt;rainbow colored&amp;lt;/scene&amp;gt; (blue amino end changing to red carboxy end) to show that the adjacent peptides are running in opposite directions making the sheet antiparallel.  Another way of detecting the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet7/1'&amp;gt;antiparallel sheet&amp;lt;/scene&amp;gt; is by displaying as cartoon.  The adjacent chains align so that &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet4/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt; are formed between the imino hydrogens of one chain and the carbonyl oxygens of an adjacent chain.  These hydrogen bonds provide the major attractive force which maintains the sheet structure.  &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;Phi &lt;/ins&gt;and &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;psi &lt;/ins&gt;values that permit this alignment in antiparallel sheets have &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet5/1'&amp;gt;median values&amp;lt;/scene&amp;gt; of &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-139&lt;/ins&gt;&amp;amp;deg; and &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;+135&lt;/ins&gt;&amp;amp;deg;, respectively.  The median values for a parallel sheet are &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-119&lt;/ins&gt;&amp;amp;deg; and &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;+113&lt;/ins&gt;&amp;amp;deg;.  &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;-&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;Twisted sheets are found in globular proteins.  Unlike the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet6/2'&amp;gt;above two types&amp;lt;/scene&amp;gt; of sheets, the valleys and the peaks of a &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl2/2'&amp;gt;twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;This sheet is part of the structure of domain 2 of glycogen phosphorylase (PDB code [[1abb]]).&amp;lt;/ref&amp;gt; do not fall on parallel lines.  Observe that the sheet is &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/4'&amp;gt;parallel&amp;lt;/scene&amp;gt;, and showing &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  Notice that in contrast to the hydrogen bonds of the antiparallel sheet shown above where the bonds were parallel here the bonds are diagonal to each other.   Show &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl5/2'&amp;gt;&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;psi and &lt;/del&gt;phi values&amp;lt;/scene&amp;gt; for randomly chosen residues.  There are a wide range of values for both &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;psi and &lt;/del&gt;phi, &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;+96&lt;/del&gt;&amp;amp;deg; to &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;+148&lt;/del&gt;&amp;amp;deg; and &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-108&lt;/del&gt;&amp;amp;deg; to &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-142&lt;/del&gt;&amp;amp;deg;, respectively.  The above sheet shown in the context of &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl4/1'&amp;gt;domain 2&amp;lt;/scene&amp;gt; of glycogen phosphorylase. There are also examples of &amp;lt;scene name='Sheets_in_Proteins/1dtg1/1'&amp;gt;antiparallel sheets&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;These sheets are part of the structure of human transferrin n-lobe mutant (PDB code [[1dtg]]).&amp;lt;/ref&amp;gt;.  Showing only the &amp;lt;scene name='Sheets_in_Proteins/1dtg2/2'&amp;gt;sheets&amp;lt;/scene&amp;gt;, and with &amp;lt;scene name='Sheets_in_Proteins/1dtg3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  &amp;lt;scene name='Sheets_in_Proteins/1dtg4/3'&amp;gt; Values&amp;lt;/scene&amp;gt; of &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;psi and &lt;/del&gt;phi for randomly chosen residues; these values range from &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;+90&lt;/del&gt;&amp;amp;deg; to &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;+167&lt;/del&gt;&amp;amp;deg; and from &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-98&lt;/del&gt;&amp;amp;deg; to &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-178&lt;/del&gt;&amp;amp;deg;, respectively.  These ranges overlap the values for the twisted parallel showing that there is no differences in the ranges for the two types of twisted sheets.  Median values for &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;psi and &lt;/del&gt;phi are &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;+140&lt;/del&gt;&amp;amp;deg; and &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-125&lt;/del&gt;&amp;amp;deg;, respectively.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;Twisted sheets are found in globular proteins.  Unlike the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet6/2'&amp;gt;above two types&amp;lt;/scene&amp;gt; of sheets, the valleys and the peaks of a &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl2/2'&amp;gt;twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;This sheet is part of the structure of domain 2 of glycogen phosphorylase (PDB code [[1abb]]).&amp;lt;/ref&amp;gt; do not fall on parallel lines.  Observe that the sheet is &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/4'&amp;gt;parallel&amp;lt;/scene&amp;gt;, and showing &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  Notice that in contrast to the hydrogen bonds of the antiparallel sheet shown above where the bonds were parallel here the bonds are diagonal to each other.   Show &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl5/2'&amp;gt;phi &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;and psi &lt;/ins&gt;values&amp;lt;/scene&amp;gt; for randomly chosen residues.  There are a wide range of values for both phi &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;and psi&lt;/ins&gt;, &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-108&lt;/ins&gt;&amp;amp;deg; to &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-142&lt;/ins&gt;&amp;amp;deg; and &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;+96&lt;/ins&gt;&amp;amp;deg; to &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;+148&lt;/ins&gt;&amp;amp;deg;, respectively.  The above sheet shown in the context of &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl4/1'&amp;gt;domain 2&amp;lt;/scene&amp;gt; of glycogen phosphorylase. There are also examples of &amp;lt;scene name='Sheets_in_Proteins/1dtg1/1'&amp;gt;antiparallel sheets&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;These sheets are part of the structure of human transferrin n-lobe mutant (PDB code [[1dtg]]).&amp;lt;/ref&amp;gt;.  Showing only the &amp;lt;scene name='Sheets_in_Proteins/1dtg2/2'&amp;gt;sheets&amp;lt;/scene&amp;gt;, and with &amp;lt;scene name='Sheets_in_Proteins/1dtg3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  &amp;lt;scene name='Sheets_in_Proteins/1dtg4/3'&amp;gt; Values&amp;lt;/scene&amp;gt; of phi &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;and psi &lt;/ins&gt;for randomly chosen residues; these values range from &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-98&lt;/ins&gt;&amp;amp;deg; to &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-178&lt;/ins&gt;&amp;amp;deg; and from &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;+90&lt;/ins&gt;&amp;amp;deg; to &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;+167&lt;/ins&gt;&amp;amp;deg;, respectively.  These ranges overlap the values for the twisted parallel showing that there is no differences in the ranges for the two types of twisted sheets.  Median values for phi &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;and psi &lt;/ins&gt;are &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;-125&lt;/ins&gt;&amp;amp;deg; and &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;+140&lt;/ins&gt;&amp;amp;deg;, respectively.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;{{Clear}}&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;{{Clear}}&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</description>
			<pubDate>Fri, 15 Jun 2012 15:28:41 GMT</pubDate>			<dc:creator>Karl Oberholser</dc:creator>			<comments>http://52.214.119.220/wiki/index.php/Talk:Sheets_in_Proteins</comments>		</item>
		<item>
			<title>Angel Herraez: fix some typos, insert degree symbols</title>
			<link>http://52.214.119.220/wiki/index.php?title=Sheets_in_Proteins&amp;diff=1369553&amp;oldid=prev</link>
			<description>&lt;p&gt;fix some typos, insert degree symbols&lt;/p&gt;

			&lt;table style=&quot;background-color: white; color:black;&quot;&gt;
			&lt;col class='diff-marker' /&gt;
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				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;←Older revision&lt;/td&gt;
				&lt;td colspan='2' style=&quot;background-color: white; color:black;&quot;&gt;Revision as of 18:12, 1 April 2012&lt;/td&gt;
			&lt;/tr&gt;
		&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;lt;Structure load='Silk 64.mol' size='500' frame='true' align='right' caption='Structures of Sheets' scene='Sheets_in_Proteins/Syn_sheet1/2' /&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;&amp;lt;Structure load='Silk 64.mol' size='500' frame='true' align='right' caption='Structures of Sheets' scene='Sheets_in_Proteins/Syn_sheet1/2' /&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;-&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;A β-pleated sheet contains multiple peptide strands that are positioned adjacent to one another as the one shown on the right&amp;lt;ref&amp;gt;This model was hand constructed using HyperChem and setting all psi and phi values to 135&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;lt;sup&amp;gt;0&amp;lt;/sup&amp;gt; &lt;/del&gt;and -139&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;lt;sup&amp;gt;0&amp;lt;/sup&amp;gt;&lt;/del&gt;, respectively.&amp;lt;/ref&amp;gt;&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;.  &lt;/del&gt;(&amp;lt;scene name='Sheets_in_Proteins/Syn_sheet1/2'&amp;gt; (Initial scene)&amp;lt;/scene&amp;gt;)  The planes of the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet2/2'&amp;gt;pleats&amp;lt;/scene&amp;gt; are formed by the planes of the peptide bond.  The alpha carbons of the peptide chain are at the valleys and peaks of the pleats.  The peptides are &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet3/3'&amp;gt;rainbow colored&amp;lt;/scene&amp;gt; (blue amino end changing to red carboxy end) to show that the adjacent peptides are running in opposite directions making the sheet antiparallel.  Another way of detecting the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet7/1'&amp;gt;antiparallel sheet&amp;lt;/scene&amp;gt; is by displaying as cartoon.  The adjacent chains align so that &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet4/1'&amp;gt;&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;hydrogne &lt;/del&gt;bonds&amp;lt;/scene&amp;gt; are formed between the imino hydrogens of one chain and the carbonyl oxygens of an adjacent chain.  These hydrogen bonds provide the major attractive force which maintains the sheet structure.  Psi and phi values that permit this alignment in antiparallel sheets have &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet5/1'&amp;gt;median values&amp;lt;/scene&amp;gt; of +135&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;lt;sup&amp;gt;0&amp;lt;/sup&amp;gt; &lt;/del&gt;and -139&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;lt;sup&amp;gt;0&amp;lt;/sup&amp;gt;&lt;/del&gt;, respectively.  The median values for a parallel sheet are +113&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;lt;sup&amp;gt;0&amp;lt;/sup&amp;gt; &lt;/del&gt;and -119&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;lt;sup&amp;gt;0&amp;lt;/sup&amp;gt;&lt;/del&gt;.  &lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;A β-pleated sheet contains multiple peptide strands that are positioned adjacent to one another as the one shown on the right&amp;lt;ref&amp;gt;This model was hand constructed using HyperChem and setting all psi and phi values to 135&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg; &lt;/ins&gt;and -139&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg;&lt;/ins&gt;, respectively.&amp;lt;/ref&amp;gt; (&amp;lt;scene name='Sheets_in_Proteins/Syn_sheet1/2'&amp;gt; (Initial scene)&amp;lt;/scene&amp;gt;)&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;. &lt;/ins&gt; The planes of the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet2/2'&amp;gt;pleats&amp;lt;/scene&amp;gt; are formed by the planes of the peptide bond.  The alpha carbons of the peptide chain are at the valleys and peaks of the pleats.  The peptides are &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet3/3'&amp;gt;rainbow colored&amp;lt;/scene&amp;gt; (blue amino end changing to red carboxy end) to show that the adjacent peptides are running in opposite directions making the sheet antiparallel.  Another way of detecting the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet7/1'&amp;gt;antiparallel sheet&amp;lt;/scene&amp;gt; is by displaying as cartoon.  The adjacent chains align so that &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet4/1'&amp;gt;&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;hydrogen &lt;/ins&gt;bonds&amp;lt;/scene&amp;gt; are formed between the imino hydrogens of one chain and the carbonyl oxygens of an adjacent chain.  These hydrogen bonds provide the major attractive force which maintains the sheet structure.  Psi and phi values that permit this alignment in antiparallel sheets have &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet5/1'&amp;gt;median values&amp;lt;/scene&amp;gt; of +135&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg; &lt;/ins&gt;and -139&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg;&lt;/ins&gt;, respectively.  The median values for a parallel sheet are +113&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg; &lt;/ins&gt;and -119&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg;&lt;/ins&gt;.  &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt;-&lt;/td&gt;&lt;td style=&quot;background: #ffa; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;Twisted sheets are found in globular proteins.  Unlike the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet6/2'&amp;gt;above two types&amp;lt;/scene&amp;gt; of sheets the valleys and the peaks of a &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl2/2'&amp;gt;twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;This sheet is part of the structure of domain 2 of glycogen phosphorylase (PDB code [[1abb]]).&amp;lt;/ref&amp;gt; do not fall on parallel lines.  Observe that the sheet is &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/4'&amp;gt;parallel&amp;lt;/scene&amp;gt;, and showing &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  Notice that in contrast to the hydrogen bonds of the antiparallel sheet shown above where the bonds were parallel here the bonds are diagonal to each other.   Show &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl5/2'&amp;gt;psi and phi values&amp;lt;/scene&amp;gt; for randomly chosen residues.  There are a wide range of values for both psi and phi, +96 to +148 and -108 to -142, respectively.  The above sheet shown in the context of &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl4/1'&amp;gt;domain 2&amp;lt;/scene&amp;gt; of glycogen phosphorylase. &lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt; Examples &lt;/del&gt;of &amp;lt;scene name='Sheets_in_Proteins/1dtg1/1'&amp;gt;antiparallel sheets&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;These sheets are part of the structure of human transferrin n-lobe mutant (PDB code [[1dtg]]).&amp;lt;/ref&amp;gt;.  Showing only the &amp;lt;scene name='Sheets_in_Proteins/1dtg2/2'&amp;gt;sheets&amp;lt;/scene&amp;gt;, and with &amp;lt;scene name='Sheets_in_Proteins/1dtg3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  &amp;lt;scene name='Sheets_in_Proteins/1dtg4/3'&amp;gt; Values&amp;lt;/scene&amp;gt; of psi and phi for randomly chosen residues; these values range from +90 to +167 and from -98 to -178, respectively.  These ranges overlap the values for the twisted parallel showing that there is no differences in the ranges for the two types of twisted sheets.  Median values for psi and phi are +140&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;lt;sup&amp;gt;0&amp;lt;/sup&amp;gt; &lt;/del&gt;and -125&lt;del style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;lt;sup&amp;gt;0&amp;lt;/sup&amp;gt;&lt;/del&gt;, respectively.&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;background: #cfc; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;Twisted sheets are found in globular proteins.  Unlike the &amp;lt;scene name='Sheets_in_Proteins/Syn_sheet6/2'&amp;gt;above two types&amp;lt;/scene&amp;gt; of sheets&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;, &lt;/ins&gt;the valleys and the peaks of a &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl2/2'&amp;gt;twisted sheet&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;This sheet is part of the structure of domain 2 of glycogen phosphorylase (PDB code [[1abb]]).&amp;lt;/ref&amp;gt; do not fall on parallel lines.  Observe that the sheet is &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl/4'&amp;gt;parallel&amp;lt;/scene&amp;gt;, and showing &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  Notice that in contrast to the hydrogen bonds of the antiparallel sheet shown above where the bonds were parallel here the bonds are diagonal to each other.   Show &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl5/2'&amp;gt;psi and phi values&amp;lt;/scene&amp;gt; for randomly chosen residues.  There are a wide range of values for both psi and phi, +96&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg; &lt;/ins&gt;to +148&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg; &lt;/ins&gt;and -108&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg; &lt;/ins&gt;to -142&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg;&lt;/ins&gt;, respectively.  The above sheet shown in the context of &amp;lt;scene name='Sheets_in_Proteins/Gly_phosyl4/1'&amp;gt;domain 2&amp;lt;/scene&amp;gt; of glycogen phosphorylase. &lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;There are also examples &lt;/ins&gt;of &amp;lt;scene name='Sheets_in_Proteins/1dtg1/1'&amp;gt;antiparallel sheets&amp;lt;/scene&amp;gt;&amp;lt;ref&amp;gt;These sheets are part of the structure of human transferrin n-lobe mutant (PDB code [[1dtg]]).&amp;lt;/ref&amp;gt;.  Showing only the &amp;lt;scene name='Sheets_in_Proteins/1dtg2/2'&amp;gt;sheets&amp;lt;/scene&amp;gt;, and with &amp;lt;scene name='Sheets_in_Proteins/1dtg3/1'&amp;gt;hydrogen bonds&amp;lt;/scene&amp;gt;.  &amp;lt;scene name='Sheets_in_Proteins/1dtg4/3'&amp;gt; Values&amp;lt;/scene&amp;gt; of psi and phi for randomly chosen residues; these values range from +90&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg; &lt;/ins&gt;to +167&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg; &lt;/ins&gt;and from -98&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg; &lt;/ins&gt;to -178&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg;&lt;/ins&gt;, respectively.  These ranges overlap the values for the twisted parallel showing that there is no differences in the ranges for the two types of twisted sheets.  Median values for psi and phi are +140&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg; &lt;/ins&gt;and -125&lt;ins style=&quot;color: red; font-weight: bold; text-decoration: none;&quot;&gt;&amp;amp;deg;&lt;/ins&gt;, respectively.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;{{Clear}}&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background: #eee; color:black; font-size: smaller;&quot;&gt;&lt;div&gt;{{Clear}}&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</description>
			<pubDate>Sun, 01 Apr 2012 18:12:26 GMT</pubDate>			<dc:creator>Angel Herraez</dc:creator>			<comments>http://52.214.119.220/wiki/index.php/Talk:Sheets_in_Proteins</comments>		</item>
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