Structural bioinformatics servers - Revision history

Eric Martz at 20:16, 15 December 2020

Eric Martz — Tue, 15 Dec 2020 20:16:33 GMT

←Older revision		Revision as of 20:16, 15 December 2020
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	* [[Biological unit\|Biological units: generation of specific oligomers]]<ref name="fgij" />		* [[Biological unit\|Biological units: generation of specific oligomers]]<ref name="fgij" />
	* [[Cation-pi interactions]], identification of<ref name="fgij">Also available within [[FirstGlance in Jmol]] under ''Key Resources''.</ref>		* [[Cation-pi interactions]], identification of<ref name="fgij">Also available within [[FirstGlance in Jmol]] under ''Key Resources''.</ref>
		+	* [[Cavity programs]]
	* Clashes, atomic: see ''Quality assessment''		* Clashes, atomic: see ''Quality assessment''
	* Comparative modeling: see ''Homology Modeling''		* Comparative modeling: see ''Homology Modeling''

Eric Martz — Fri, 12 Oct 2012 19:36:21 GMT

External Articles

←Older revision		Revision as of 19:36, 12 October 2012
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	* [[Structural genomics]], notably the [http://targetdb.sbkb.org/TargetDB/ Target Database for Structural Biology]		* [[Structural genomics]], notably the [http://targetdb.sbkb.org/TargetDB/ Target Database for Structural Biology]

-	==External ~~Articles~~==	+	==External Resources==

	* Binding sites detection: [http://probis.cmm.ki.si/ ProBIS Server]		* Binding sites detection: [http://probis.cmm.ki.si/ ProBIS Server]
	* [http://www.umass.edu/microbio/chime/pe_beta/pe/protexpl/psbiores.htm Protein Structure Bioinformatics Resources], a list from the early 2000's compiled by [[User:Eric Martz]] for [[Protein Explorer]].		* [http://www.umass.edu/microbio/chime/pe_beta/pe/protexpl/psbiores.htm Protein Structure Bioinformatics Resources], a list from the early 2000's compiled by [[User:Eric Martz]] for [[Protein Explorer]].
		+	* [http://www.sbkb.org/ Structural Biology Knowledgebase] of PSI\|Nature.

	==Notes==		==Notes==
	<references />		<references />

Eric Martz — Fri, 12 Oct 2012 19:30:08 GMT

External Articles

←Older revision		Revision as of 19:30, 12 October 2012
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	==External Articles==		==External Articles==

		+	* Binding sites detection: [http://probis.cmm.ki.si/ ProBIS Server]
	* [http://www.umass.edu/microbio/chime/pe_beta/pe/protexpl/psbiores.htm Protein Structure Bioinformatics Resources], a list from the early 2000's compiled by [[User:Eric Martz]] for [[Protein Explorer]].		* [http://www.umass.edu/microbio/chime/pe_beta/pe/protexpl/psbiores.htm Protein Structure Bioinformatics Resources], a list from the early 2000's compiled by [[User:Eric Martz]] for [[Protein Explorer]].

	==Notes==		==Notes==
	<references />		<references />

Eric Martz — Fri, 02 Mar 2012 21:37:02 GMT

External Articles

←Older revision		Revision as of 21:37, 2 March 2012
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	==External Articles==		==External Articles==

-	* [http://www.umass.edu/microbio/chime/pe_beta/pe/protexpl/psbiores.htm Protein Structure Bioinformatics Resources]	+	* [http://www.umass.edu/microbio/chime/pe_beta/pe/protexpl/psbiores.htm Protein Structure Bioinformatics Resources], a list from the early 2000's compiled by [[User:Eric Martz]] for [[Protein Explorer]].

	==Notes==		==Notes==
	<references />		<references />

Eric Martz — Fri, 02 Mar 2012 21:35:55 GMT

External Articles

←Older revision		Revision as of 21:35, 2 March 2012
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	==External Articles==		==External Articles==
		+
		+	* [http://www.umass.edu/microbio/chime/pe_beta/pe/protexpl/psbiores.htm Protein Structure Bioinformatics Resources]

	==Notes==		==Notes==
	<references />		<references />

Eric Martz — Fri, 02 Mar 2012 21:34:16 GMT

Articles in Proteopedia

←Older revision		Revision as of 21:34, 2 March 2012
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	* [[Interface analysis servers]]		* [[Interface analysis servers]]
	* [[Intrinsically Disordered Protein\|Intrinsically disordered regions]], identification of		* [[Intrinsically Disordered Protein\|Intrinsically disordered regions]], identification of
		+	* [[Membrane proteins]]
	* [[Morphs]], constructing and animating		* [[Morphs]], constructing and animating
	* [[Quality assessment for molecular models]]		* [[Quality assessment for molecular models]]

Eric Martz — Fri, 02 Mar 2012 21:31:50 GMT

Articles in Proteopedia

←Older revision		Revision as of 21:31, 2 March 2012
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	* [[Quality assessment for molecular models]]		* [[Quality assessment for molecular models]]
	* Quaternary structure servers: see ''Biological Unit'' and ''Interface analysis servers''		* Quaternary structure servers: see ''Biological Unit'' and ''Interface analysis servers''
		+	* [[Structural genomics]], notably the [http://targetdb.sbkb.org/TargetDB/ Target Database for Structural Biology]

	==External Articles==		==External Articles==

Eric Martz — Fri, 02 Mar 2012 21:20:31 GMT

Articles in Proteopedia

←Older revision		Revision as of 21:20, 2 March 2012
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	* [[Conservation, Evolutionary]] notably [[ConSurfDB vs. ConSurf\|ConSurf]]<ref name="pp">Also available within Proteopedia, in the blue box under the molecule, on all pages titled with a [[PDB code]].</ref><ref name="fgij" />		* [[Conservation, Evolutionary]] notably [[ConSurfDB vs. ConSurf\|ConSurf]]<ref name="pp">Also available within Proteopedia, in the blue box under the molecule, on all pages titled with a [[PDB code]].</ref><ref name="fgij" />
	* Evolutionary conservation: see ''Conservation, Evolutionary''		* Evolutionary conservation: see ''Conservation, Evolutionary''
		+	* [[Site\|Functional sites]], identifying
	* [[Homology modeling servers]]		* [[Homology modeling servers]]
	* [[Improving published models]] e.g. MolProbity and PDB_REDO.		* [[Improving published models]] e.g. MolProbity and PDB_REDO.

Eric Martz — Fri, 02 Mar 2012 21:17:09 GMT

Articles in Proteopedia

←Older revision		Revision as of 21:17, 2 March 2012
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	* [[Interface analysis servers]]		* [[Interface analysis servers]]
	* [[Intrinsically Disordered Protein\|Intrinsically disordered regions]], identification of		* [[Intrinsically Disordered Protein\|Intrinsically disordered regions]], identification of
		+	* [[Morphs]], constructing and animating
	* [[Quality assessment for molecular models]]		* [[Quality assessment for molecular models]]
	* Quaternary structure servers: see ''Biological Unit'' and ''Interface analysis servers''		* Quaternary structure servers: see ''Biological Unit'' and ''Interface analysis servers''

Eric Martz — Fri, 02 Mar 2012 21:13:50 GMT

Articles in Proteopedia

←Older revision		Revision as of 21:13, 2 March 2012
Line 5:		Line 5:
	* [[Biological unit\|Biological units: generation of specific oligomers]]<ref name="fgij" />		* [[Biological unit\|Biological units: generation of specific oligomers]]<ref name="fgij" />
	* [[Cation-pi interactions]], identification of<ref name="fgij">Also available within [[FirstGlance in Jmol]] under ''Key Resources''.</ref>		* [[Cation-pi interactions]], identification of<ref name="fgij">Also available within [[FirstGlance in Jmol]] under ''Key Resources''.</ref>
		+	* Clashes, atomic: see ''Quality assessment''
	* Comparative modeling: see ''Homology Modeling''		* Comparative modeling: see ''Homology Modeling''
	* [[Conservation, Evolutionary]] notably [[ConSurfDB vs. ConSurf\|ConSurf]]<ref name="pp">Also available within Proteopedia, in the blue box under the molecule, on all pages titled with a [[PDB code]].</ref><ref name="fgij" />		* [[Conservation, Evolutionary]] notably [[ConSurfDB vs. ConSurf\|ConSurf]]<ref name="pp">Also available within Proteopedia, in the blue box under the molecule, on all pages titled with a [[PDB code]].</ref><ref name="fgij" />