Template:STRUCTURE 1jk3 - Revision history

OCA at 16:03, 27 July 2012

OCA — Fri, 27 Jul 2012 16:03:11 GMT

←Older revision		Revision as of 16:03, 27 July 2012
Line 1:		Line 1:
	{{Structure		{{Structure
-	\|PDB= {{{PDB}}}\|SCENE={{{SCENE\|}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|[[1jk3]], resolution 1.09Å (<scene name='initialview01'>default scene</scene>)}}}	+	\|PDB= {{{PDB}}}\|SCENE={{{SCENE\|}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|[[1jk3]], [[Resolution\|resolution]] 1.09Å (<scene name='initialview01'>default scene</scene>)}}}
	\|LIGAND= <scene name='pdbligand=BAT:4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE'>BAT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>		\|LIGAND= <scene name='pdbligand=BAT:4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE'>BAT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
	\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Macrophage_elastase Macrophage elastase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.65 3.4.24.65] </span>		\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Macrophage_elastase Macrophage elastase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.65 3.4.24.65] </span>
-	\|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04278 ZnMc_MMP]</span>
	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jk3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jk3 OCA], [http://www.ebi.ac.uk/pdbsum/1jk3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1jk3 RCSB]</span>		\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jk3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jk3 OCA], [http://www.ebi.ac.uk/pdbsum/1jk3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1jk3 RCSB]</span>
	\|FUNCTION={{GO\|id=GO:0008233 \| text = peptidase activity}}{{GO\|id=GO:0008270 \| text = zinc ion binding}}{{GO\|id=GO:0003824 \| text = catalytic activity}}{{GO\|id=GO:0016787 \| text = hydrolase activity}}{{GO\|id=GO:0005509 \| text = calcium ion binding}}{{GO\|id=GO:0008237 \| text = metallopeptidase activity}}{{GO\|id=GO:0046872 \| text = metal ion binding}}{{GO\|id=GO:0004234 \| text = macrophage elastase activity}}{{GO\|id=GO:0004222 \| text = metalloendopeptidase activity}}		\|FUNCTION={{GO\|id=GO:0008233 \| text = peptidase activity}}{{GO\|id=GO:0008270 \| text = zinc ion binding}}{{GO\|id=GO:0003824 \| text = catalytic activity}}{{GO\|id=GO:0016787 \| text = hydrolase activity}}{{GO\|id=GO:0005509 \| text = calcium ion binding}}{{GO\|id=GO:0008237 \| text = metallopeptidase activity}}{{GO\|id=GO:0046872 \| text = metal ion binding}}{{GO\|id=GO:0004234 \| text = macrophage elastase activity}}{{GO\|id=GO:0004222 \| text = metalloendopeptidase activity}}
Line 9:		Line 8:
	\|COMPONENT={{GO\|id=GO:0005578 \| text = proteinaceous extracellular matrix}}		\|COMPONENT={{GO\|id=GO:0005578 \| text = proteinaceous extracellular matrix}}
	\|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1jk3A00 1Jk3A00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006025 Ipr006025], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000585 Ipr000585], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001818 Ipr001818], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006026 Ipr006026], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002477 Ipr002477]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00413 PF00413]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=66790 d1jk3a_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P39900 P39900]</span>		\|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1jk3A00 1Jk3A00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006025 Ipr006025], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000585 Ipr000585], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001818 Ipr001818], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006026 Ipr006026], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002477 Ipr002477]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00413 PF00413]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=66790 d1jk3a_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P39900 P39900]</span>
-	\|~~FARESOURCES~~=~~<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=MMP12 MMP12]</span>~~	+	\|uPDB=1JK3\|CONSURF={{!}}-
-	\|CONSURF={{!}}-	+
	{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif\|center]]		{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif\|center]]
	{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"		{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"

OCA at 07:40, 18 February 2009

OCA — Wed, 18 Feb 2009 07:40:55 GMT

←Older revision		Revision as of 07:40, 18 February 2009
Line 1:		Line 1:
-	{{~~StructureD~~	+	{{Structure
-	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|1jk3, resolution 1.09Å (<scene name='initialview01'>~~initial~~ scene</scene>)}}}	+	\|PDB= {{{PDB}}}\|SCENE={{{SCENE\|}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|[[1jk3]], resolution 1.09Å (<scene name='initialview01'>default scene</scene>)}}}
	\|LIGAND= <scene name='pdbligand=BAT:4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE'>BAT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>		\|LIGAND= <scene name='pdbligand=BAT:4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE'>BAT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
	\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Macrophage_elastase Macrophage elastase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.65 3.4.24.65] </span>		\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Macrophage_elastase Macrophage elastase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.65 3.4.24.65] </span>
Line 10:		Line 10:
	\|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1jk3A00 1Jk3A00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006025 Ipr006025], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000585 Ipr000585], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001818 Ipr001818], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006026 Ipr006026], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002477 Ipr002477]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00413 PF00413]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=66790 d1jk3a_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P39900 P39900]</span>		\|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1jk3A00 1Jk3A00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006025 Ipr006025], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000585 Ipr000585], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001818 Ipr001818], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006026 Ipr006026], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002477 Ipr002477]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00413 PF00413]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=66790 d1jk3a_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P39900 P39900]</span>
	\|FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=MMP12 MMP12]</span>		\|FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=MMP12 MMP12]</span>
		+	\|CONSURF={{!}}-
		+	{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif\|center]]
		+	{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
		+	{{!}} '''Toggle Conservation Colors:'''
		+	{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
		+	Rows = identical sequences:
		+	<jmol>
		+	<jmolButton>
		+	<script></script>
		+	<text>A [x]</text>
		+	<name>jmb_1jk3_A</name>
		+	<title>toggle chain A</title>
		+	<jsscript>ConsurfChainButton(elementClicked)</jsscript>
		+	<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
		+	</jmolButton>
		+	</jmol>
		+
	}}		}}

OCA at 17:21, 1 July 2008

OCA — Tue, 01 Jul 2008 17:21:51 GMT

←Older revision		Revision as of 17:21, 1 July 2008
Line 9:		Line 9:
	\|COMPONENT={{GO\|id=GO:0005578 \| text = proteinaceous extracellular matrix}}		\|COMPONENT={{GO\|id=GO:0005578 \| text = proteinaceous extracellular matrix}}
	\|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1jk3A00 1Jk3A00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006025 Ipr006025], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000585 Ipr000585], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001818 Ipr001818], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006026 Ipr006026], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002477 Ipr002477]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00413 PF00413]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=66790 d1jk3a_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P39900 P39900]</span>		\|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1jk3A00 1Jk3A00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006025 Ipr006025], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000585 Ipr000585], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001818 Ipr001818], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006026 Ipr006026], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002477 Ipr002477]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00413 PF00413]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=66790 d1jk3a_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P39900 P39900]</span>
-	\|FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=~~P39900 P39900~~]</span>	+	\|FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=MMP12 MMP12]</span>
	}}		}}

OCA at 13:09, 18 June 2008

OCA — Wed, 18 Jun 2008 13:09:49 GMT

←Older revision		Revision as of 13:09, 18 June 2008
Line 1:		Line 1:
-	{{~~Structure~~	+	{{StructureD
-	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE=350\|CAPTION= 1jk3, resolution 1.09Å (<scene name='initialview01'>initial scene</scene>)	+	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|1jk3, resolution 1.09Å (<scene name='initialview01'>initial scene</scene>)}}}
-	~~\|SITE=~~	+
	\|LIGAND= <scene name='pdbligand=BAT:4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE'>BAT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>		\|LIGAND= <scene name='pdbligand=BAT:4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE'>BAT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
	\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Macrophage_elastase Macrophage elastase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.65 3.4.24.65] </span>		\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Macrophage_elastase Macrophage elastase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.65 3.4.24.65] </span>
-	\|GENE=
	\|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04278 ZnMc_MMP]</span>		\|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04278 ZnMc_MMP]</span>
-	\|RELATEDENTRY=
	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jk3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jk3 OCA], [http://www.ebi.ac.uk/pdbsum/1jk3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1jk3 RCSB]</span>		\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jk3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jk3 OCA], [http://www.ebi.ac.uk/pdbsum/1jk3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1jk3 RCSB]</span>
		+	\|FUNCTION={{GO\|id=GO:0008233 \| text = peptidase activity}}{{GO\|id=GO:0008270 \| text = zinc ion binding}}{{GO\|id=GO:0003824 \| text = catalytic activity}}{{GO\|id=GO:0016787 \| text = hydrolase activity}}{{GO\|id=GO:0005509 \| text = calcium ion binding}}{{GO\|id=GO:0008237 \| text = metallopeptidase activity}}{{GO\|id=GO:0046872 \| text = metal ion binding}}{{GO\|id=GO:0004234 \| text = macrophage elastase activity}}{{GO\|id=GO:0004222 \| text = metalloendopeptidase activity}}
		+	\|PROCESS={{GO\|id=GO:0008152 \| text = metabolic process}}{{GO\|id=GO:0006928 \| text = cell motility}}{{GO\|id=GO:0006508 \| text = proteolysis}}
		+	\|COMPONENT={{GO\|id=GO:0005578 \| text = proteinaceous extracellular matrix}}
		+	\|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1jk3A00 1Jk3A00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006025 Ipr006025], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000585 Ipr000585], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001818 Ipr001818], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006026 Ipr006026], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002477 Ipr002477]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00413 PF00413]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=66790 d1jk3a_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P39900 P39900]</span>
		+	\|FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=P39900 P39900]</span>
	}}		}}

OCA: Protected "Template:STRUCTURE 1jk3" [edit=sysop:move=sysop]

OCA — Fri, 02 May 2008 18:19:06 GMT

Protected "Template:STRUCTURE 1jk3" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:19, 2 May 2008

OCA: New page: {{Structure |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 1jk3, resolution 1.09Å (initial scene) |SITE= |LIGAND= |SITE=
|LIGAND= <scene name='pdbligand=BAT:4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE'>BAT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
|ACTIVITY= [http://en.wikipedia.org/wiki/Macrophage_elastase Macrophage elastase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.65 3.4.24.65] 
|GENE=
|DOMAIN=[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04278 ZnMc_MMP]
|RELATEDENTRY=
|RESOURCES=[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jk3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jk3 OCA], [http://www.ebi.ac.uk/pdbsum/1jk3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1jk3 RCSB]
}}