Template:STRUCTURE 2h1k - Revision history

OCA at 11:50, 7 January 2013

OCA — Mon, 07 Jan 2013 11:50:21 GMT

←Older revision		Revision as of 11:50, 7 January 2013
Line 1:		Line 1:
	{{Structure		{{Structure
-	\|PDB= {{{PDB}}}\|SCENE={{{SCENE\|}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|[[2h1k]], resolution 2.42Å (<scene name='initialview01'>default scene</scene>)}}}	+	\|PDB= {{{PDB}}}\|SCENE={{{SCENE\|}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|[[2h1k]], [[Resolution\|resolution]] 2.42Å (<scene name='initialview01'>default scene</scene>)}}}
	\|GENE= IPF1, PDX1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10036 Mesocricetus auratus])		\|GENE= IPF1, PDX1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10036 Mesocricetus auratus])
-	~~\|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086 homeodomain]</span>~~	+	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2h1k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h1k OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2h1k RCSB], [http://www.ebi.ac.uk/pdbsum/2h1k PDBsum]</span>
-	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2h1k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h1k OCA], [http://www.~~ebi~~.~~ac.uk~~/~~pdbsum~~/2h1k ~~PDBsum~~], [http://www.~~rcsb~~.~~org~~/~~pdb~~/~~explore.do?structureId=~~2h1k ~~RCSB~~]</span>	+
	\|FUNCTION={{GO\|id=GO:0003677 \| text = DNA binding}}{{GO\|id=GO:0003700 \| text = transcription factor activity}}{{GO\|id=GO:0043565 \| text = sequence-specific DNA binding}}		\|FUNCTION={{GO\|id=GO:0003677 \| text = DNA binding}}{{GO\|id=GO:0003700 \| text = transcription factor activity}}{{GO\|id=GO:0043565 \| text = sequence-specific DNA binding}}
	\|PROCESS={{GO\|id=GO:0045449 \| text = regulation of transcription}}{{GO\|id=GO:0006355 \| text = regulation of transcription, DNA-dependent}}{{GO\|id=GO:0006350 \| text = transcription}}		\|PROCESS={{GO\|id=GO:0045449 \| text = regulation of transcription}}{{GO\|id=GO:0006355 \| text = regulation of transcription, DNA-dependent}}{{GO\|id=GO:0006350 \| text = transcription}}
	\|COMPONENT={{GO\|id=GO:0005634 \| text = nucleus}}		\|COMPONENT={{GO\|id=GO:0005634 \| text = nucleus}}
	\|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012287 Ipr012287], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009057 Ipr009057], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001356 Ipr001356], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001827 Ipr001827], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000047 Ipr000047]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00046 PF00046]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P70118 P70118]</span>		\|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012287 Ipr012287], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009057 Ipr009057], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001356 Ipr001356], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001827 Ipr001827], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000047 Ipr000047]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00046 PF00046]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P70118 P70118]</span>
-	\|CONSURF={{!}}-	+	\|uPDB=2H1K\|CONSURF={{!}}-
	{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif\|center]]		{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif\|center]]
	{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"		{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"

OCA at 10:09, 16 February 2009

OCA — Mon, 16 Feb 2009 10:09:57 GMT

←Older revision		Revision as of 10:09, 16 February 2009
Line 1:		Line 1:
-	{{~~StructureD~~	+	{{Structure
-	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|2h1k, resolution 2.42Å (<scene name='initialview01'>~~initial~~ scene</scene>)}}}	+	\|PDB= {{{PDB}}}\|SCENE={{{SCENE\|}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|[[2h1k]], resolution 2.42Å (<scene name='initialview01'>default scene</scene>)}}}
	\|GENE= IPF1, PDX1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10036 Mesocricetus auratus])		\|GENE= IPF1, PDX1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10036 Mesocricetus auratus])
	\|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086 homeodomain]</span>		\|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086 homeodomain]</span>
Line 8:		Line 8:
	\|COMPONENT={{GO\|id=GO:0005634 \| text = nucleus}}		\|COMPONENT={{GO\|id=GO:0005634 \| text = nucleus}}
	\|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012287 Ipr012287], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009057 Ipr009057], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001356 Ipr001356], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001827 Ipr001827], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000047 Ipr000047]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00046 PF00046]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P70118 P70118]</span>		\|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012287 Ipr012287], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009057 Ipr009057], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001356 Ipr001356], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001827 Ipr001827], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000047 Ipr000047]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00046 PF00046]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P70118 P70118]</span>
		+	\|CONSURF={{!}}-
		+	{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif\|center]]
		+	{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
		+	{{!}} '''Toggle Conservation Colors:'''
		+	{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
		+	Rows = identical sequences:
		+	<jmol>
		+	<jmolButton>
		+	<script></script>
		+	<text>A [x]</text>
		+	<name>jmb_2h1k_A</name>
		+	<title>toggle chain A</title>
		+	<jsscript>ConsurfChainButton(elementClicked)</jsscript>
		+	<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
		+	</jmolButton>
		+	</jmol>
		+	<jmol>
		+	<jmolButton>
		+	<script></script>
		+	<text>C [x]</text>
		+	<name>jmb_2h1k_C</name>
		+	<title>toggle chain C</title>
		+	<jsscript>ConsurfChainButton(elementClicked)</jsscript>
		+	<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
		+	</jmolButton>
		+	</jmol>
		+
		+	<jmol>
		+	<jmolButton>
		+	<script></script>
		+	<text>B [x]</text>
		+	<name>jmb_2h1k_B</name>
		+	<title>toggle chain B</title>
		+	<jsscript>ConsurfChainButton(elementClicked)</jsscript>
		+	<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
		+	</jmolButton>
		+	</jmol>
		+	<jmol>
		+	<jmolButton>
		+	<script></script>
		+	<text>D [x]</text>
		+	<name>jmb_2h1k_D</name>
		+	<title>toggle chain D</title>
		+	<jsscript>ConsurfChainButton(elementClicked)</jsscript>
		+	<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
		+	</jmolButton>
		+	</jmol>
		+
		+	<jmol>
		+	<jmolButton>
		+	<script></script>
		+	<text>E [x]</text>
		+	<name>jmb_2h1k_E</name>
		+	<title>toggle chain E</title>
		+	<jsscript>ConsurfChainButton(elementClicked)</jsscript>
		+	<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
		+	</jmolButton>
		+	</jmol>
		+	<jmol>
		+	<jmolButton>
		+	<script></script>
		+	<text>F [x]</text>
		+	<name>jmb_2h1k_F</name>
		+	<title>toggle chain F</title>
		+	<jsscript>ConsurfChainButton(elementClicked)</jsscript>
		+	<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
		+	</jmolButton>
		+	</jmol>
		+
	}}		}}

OCA at 11:20, 27 July 2008

OCA — Sun, 27 Jul 2008 11:20:20 GMT

←Older revision		Revision as of 11:20, 27 July 2008
Line 1:		Line 1:
	{{StructureD		{{StructureD
	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|2h1k, resolution 2.42Å (<scene name='initialview01'>initial scene</scene>)}}}		\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|2h1k, resolution 2.42Å (<scene name='initialview01'>initial scene</scene>)}}}
-	\|SITE=
-	\|LIGAND=
-	\|ACTIVITY=
	\|GENE= IPF1, PDX1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10036 Mesocricetus auratus])		\|GENE= IPF1, PDX1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10036 Mesocricetus auratus])
	\|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086 homeodomain]</span>		\|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086 homeodomain]</span>
-	\|RELATEDENTRY=
	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2h1k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h1k OCA], [http://www.ebi.ac.uk/pdbsum/2h1k PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2h1k RCSB]</span>		\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2h1k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h1k OCA], [http://www.ebi.ac.uk/pdbsum/2h1k PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2h1k RCSB]</span>
	\|FUNCTION={{GO\|id=GO:0003677 \| text = DNA binding}}{{GO\|id=GO:0003700 \| text = transcription factor activity}}{{GO\|id=GO:0043565 \| text = sequence-specific DNA binding}}		\|FUNCTION={{GO\|id=GO:0003677 \| text = DNA binding}}{{GO\|id=GO:0003700 \| text = transcription factor activity}}{{GO\|id=GO:0043565 \| text = sequence-specific DNA binding}}
	\|PROCESS={{GO\|id=GO:0045449 \| text = regulation of transcription}}{{GO\|id=GO:0006355 \| text = regulation of transcription, DNA-dependent}}{{GO\|id=GO:0006350 \| text = transcription}}		\|PROCESS={{GO\|id=GO:0045449 \| text = regulation of transcription}}{{GO\|id=GO:0006355 \| text = regulation of transcription, DNA-dependent}}{{GO\|id=GO:0006350 \| text = transcription}}
	\|COMPONENT={{GO\|id=GO:0005634 \| text = nucleus}}		\|COMPONENT={{GO\|id=GO:0005634 \| text = nucleus}}
-	\|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012287 Ipr012287]~~<br>InterPro :~~ [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009057 Ipr009057]~~<br>InterPro :~~ [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001356 Ipr001356]~~<br>InterPro :~~ [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001827 Ipr001827]~~<br>InterPro :~~ [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000047 Ipr000047]<br>~~UniProt~~ : [http://ca.~~expasy~~.~~org~~/~~cgi-bin/niceprot.pl~~?~~P70118 P70118~~]<br>~~Pfam~~ : [http://~~pfam~~.~~sanger~~.~~ac.uk~~/~~family~~?~~acc=PF00046 PF00046~~]</span>	+	\|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012287 Ipr012287], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009057 Ipr009057], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001356 Ipr001356], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001827 Ipr001827], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000047 Ipr000047]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00046 PF00046]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P70118 P70118]</span>
	}}		}}

OCA at 07:04, 30 May 2008

OCA — Fri, 30 May 2008 07:04:20 GMT

←Older revision		Revision as of 07:04, 30 May 2008
Line 1:		Line 1:
-	{{~~Structure~~	+	{{StructureD
-	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE=350\|CAPTION= 2h1k, resolution 2.42Å (<scene name='initialview01'>initial scene</scene>)	+	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|2h1k, resolution 2.42Å (<scene name='initialview01'>initial scene</scene>)}}}
	\|SITE=		\|SITE=
-	\|LIGAND= <scene name='pdbligand=DA:2'-DEOXYADENOSINE-5'-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5'-MONOPHOSPHATE'>DT</scene>	+	\|LIGAND=
	\|ACTIVITY=		\|ACTIVITY=
	\|GENE= IPF1, PDX1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10036 Mesocricetus auratus])		\|GENE= IPF1, PDX1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10036 Mesocricetus auratus])
Line 8:		Line 8:
	\|RELATEDENTRY=		\|RELATEDENTRY=
	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2h1k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h1k OCA], [http://www.ebi.ac.uk/pdbsum/2h1k PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2h1k RCSB]</span>		\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2h1k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h1k OCA], [http://www.ebi.ac.uk/pdbsum/2h1k PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2h1k RCSB]</span>
		+	\|FUNCTION={{GO\|id=GO:0003677 \| text = DNA binding}}{{GO\|id=GO:0003700 \| text = transcription factor activity}}{{GO\|id=GO:0043565 \| text = sequence-specific DNA binding}}
		+	\|PROCESS={{GO\|id=GO:0045449 \| text = regulation of transcription}}{{GO\|id=GO:0006355 \| text = regulation of transcription, DNA-dependent}}{{GO\|id=GO:0006350 \| text = transcription}}
		+	\|COMPONENT={{GO\|id=GO:0005634 \| text = nucleus}}
		+	\|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012287 Ipr012287]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009057 Ipr009057]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001356 Ipr001356]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001827 Ipr001827]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000047 Ipr000047]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P70118 P70118]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00046 PF00046]</span>
	}}		}}

OCA: Protected "Template:STRUCTURE 2h1k" [edit=sysop:move=sysop]

OCA — Sun, 04 May 2008 02:45:41 GMT

Protected "Template:STRUCTURE 2h1k" [edit=sysop:move=sysop]

←Older revision

Revision as of 02:45, 4 May 2008

OCA: New page: {{Structure |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 2h1k, resolution 2.42Å (initial scene) |SITE= |LIGAND= |SITE=
|LIGAND= <scene name='pdbligand=DA:2'-DEOXYADENOSINE-5'-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5'-MONOPHOSPHATE'>DT</scene>
|ACTIVITY=
|GENE= IPF1, PDX1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10036 Mesocricetus auratus])
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086 homeodomain]</span>
|RELATEDENTRY=
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2h1k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h1k OCA], [http://www.ebi.ac.uk/pdbsum/2h1k PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2h1k RCSB]</span>
}}