Template:STRUCTURE 2nmz - Revision history

OCA at 13:02, 27 February 2013

OCA — Wed, 27 Feb 2013 13:02:39 GMT

←Older revision		Revision as of 13:02, 27 February 2013
Line 6:		Line 6:
	\|RELATEDENTRY=[[2nmw\|2nmw]], [[2nmy\|2nmy]], [[2nnk\|2nnk]], [[2nnp\|2nnp]]		\|RELATEDENTRY=[[2nmw\|2nmw]], [[2nmy\|2nmy]], [[2nnk\|2nnk]], [[2nnp\|2nnp]]
	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nmz RCSB], [http://www.ebi.ac.uk/pdbsum/2nmz PDBsum]</span>		\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nmz RCSB], [http://www.ebi.ac.uk/pdbsum/2nmz PDBsum]</span>
-	\|~~FUNCTION~~=~~{{GO\|id~~=GO:~~0008233 \| text~~ = ~~peptidase activity}}{{GO\|id~~=GO:~~0004190 \| text~~ = ~~aspartic-type endopeptidase activity}}{{GO\|id~~=GO:~~0016787 \| text~~ = ~~hydrolase activity}}~~	+	\|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/domain/2nmzA00 2Nmza00], [http://www.cathdb.info/domain/2nmzB00 2Nmzb00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR021109 Ipr021109], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000721 Ipr000721], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR018061 Ipr018061], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001584 Ipr001584], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017856 Ipr017856], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002156 Ipr002156], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012344 Ipr012344], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000071 Ipr000071], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012337 Ipr012337], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001995 Ipr001995], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010999 Ipr010999], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001037 Ipr001037], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010661 Ipr010661], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001969 Ipr001969], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010659 Ipr010659], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000477 Ipr000477], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008919 Ipr008919], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001878 Ipr001878], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008916 Ipr008916], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003308 Ipr003308]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00077 PF00077]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=138386 d2nmza1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=138387 d2nmzb1]</span>
-	~~\|PROCESS~~=~~{{GO\|id~~=GO:~~0006508 \| text~~ = ~~proteolysis}}~~	+
-	~~\|SARESOURCES~~=~~<span class~~=~~'plainlinks'>InterPro~~ : [http://www.ebi.ac.uk/interpro/ISearch?query=~~IPR009007 Ipr009007~~], [http://www.ebi.ac.uk/interpro/ISearch?query=~~IPR001995 Ipr001995~~], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001969 Ipr001969]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00077 PF00077]<br>~~UniProt~~ : [http://ca.~~expasy~~.~~org~~/cgi-~~bin~~/~~niceprot~~.pl?~~Q7SSI0 Q7SSI0~~]</span>	+
	\|uPDB=2NMZ\|CONSURF={{!}}-		\|uPDB=2NMZ\|CONSURF={{!}}-
	{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif\|center]]		{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif\|center]]

OCA at 14:50, 7 January 2013

OCA — Mon, 07 Jan 2013 14:50:44 GMT

←Older revision		Revision as of 14:50, 7 January 2013
Line 1:		Line 1:
	{{Structure		{{Structure
-	\|PDB= {{{PDB}}}\|SCENE={{{SCENE\|}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|[[2nmz]], resolution 0.97Å (<scene name='initialview01'>default scene</scene>)}}}	+	\|PDB= {{{PDB}}}\|SCENE={{{SCENE\|}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|[[2nmz]], [[Resolution\|resolution]] 0.97Å (<scene name='initialview01'>default scene</scene>)}}}
-	\|SITE= <scene name='pdbsite=AC1:Binding+Site+For+Residue+So4+A+601'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+So4+A+602'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+So4+B+603'>AC3</scene> and <scene name='pdbsite=AC4:Binding+Site+For+Residue+Roc+B+401'>AC4</scene>	+	\|LIGAND= <scene name='pdbligand=ROC:(2S)-N-[(2S,3R)-4-[(2S,3S,4AS,8AS)-3-(TERT-BUTYLCARBAMOYL)-3,4,4A,5,6,7,8,8A-OCTAHYDRO-1H-ISOQUINOLIN-2-YL]-3-HYDROXY-1-PHENYL-BUTAN-2-YL]-2-(QUINOLIN-2-YLCARBONYLAMINO)BUTANEDIAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
-	\|LIGAND= <scene name='pdbligand=ROC:N~~~1~~~-{(1S,2R)-~~1-BENZYL-3~~-[(3R,~~4AR~~,~~8AR~~)-3-(TERT-BUTYLCARBAMOYL)~~OCTAHYDROISOQUINOLIN~~-2(1H)-YL]-2-~~HYDROXYPROPYL}~~-N~2~-(QUINOLIN-2-~~YLCARBONYL~~)~~-L-ASPARTAMIDE~~'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>	+
	\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span>		\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span>
	\|GENE= gag ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 Human immunodeficiency virus 1])		\|GENE= gag ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 Human immunodeficiency virus 1])
-	\|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00077 RVP]</span>
	\|RELATEDENTRY=[[2nmw\|2nmw]], [[2nmy\|2nmy]], [[2nnk\|2nnk]], [[2nnp\|2nnp]]		\|RELATEDENTRY=[[2nmw\|2nmw]], [[2nmy\|2nmy]], [[2nnk\|2nnk]], [[2nnp\|2nnp]]
-	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www.~~ebi~~.~~ac.uk~~/~~pdbsum~~/2nmz ~~PDBsum~~], [http://www.~~rcsb~~.~~org~~/~~pdb~~/~~explore.do?structureId=~~2nmz ~~RCSB~~]</span>	+	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nmz RCSB], [http://www.ebi.ac.uk/pdbsum/2nmz PDBsum]</span>
	\|FUNCTION={{GO\|id=GO:0008233 \| text = peptidase activity}}{{GO\|id=GO:0004190 \| text = aspartic-type endopeptidase activity}}{{GO\|id=GO:0016787 \| text = hydrolase activity}}		\|FUNCTION={{GO\|id=GO:0008233 \| text = peptidase activity}}{{GO\|id=GO:0004190 \| text = aspartic-type endopeptidase activity}}{{GO\|id=GO:0016787 \| text = hydrolase activity}}
	\|PROCESS={{GO\|id=GO:0006508 \| text = proteolysis}}		\|PROCESS={{GO\|id=GO:0006508 \| text = proteolysis}}

OCA at 12:44, 21 October 2009

OCA — Wed, 21 Oct 2009 12:44:18 GMT

OCA at 07:40, 18 February 2009

OCA — Wed, 18 Feb 2009 07:40:19 GMT

←Older revision		Revision as of 07:40, 18 February 2009
Line 1:		Line 1:
-	{{~~StructureD~~	+	{{Structure
-	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|2nmz, resolution 0.97Å (<scene name='initialview01'>default scene</scene>)}}}	+	\|PDB= {{{PDB}}}\|SCENE={{{SCENE\|}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|[[2nmz]], resolution 0.97Å (<scene name='initialview01'>default scene</scene>)}}}
	\|LIGAND= <scene name='pdbligand=ROC:CIS-N-TERT-BUTYL-DECAHYDRO-2-[2(R)-HYDROXY-4-PHENYL-3(S)-[[N-2-QUINOLYLCARBONYL-L-ASPARAGINYL]AMINO]BUTYL]-(4AS)-ISOQUINOLINE-3(S)-CARBOXAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>		\|LIGAND= <scene name='pdbligand=ROC:CIS-N-TERT-BUTYL-DECAHYDRO-2-[2(R)-HYDROXY-4-PHENYL-3(S)-[[N-2-QUINOLYLCARBONYL-L-ASPARAGINYL]AMINO]BUTYL]-(4AS)-ISOQUINOLINE-3(S)-CARBOXAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
	\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span>		\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span>
Line 10:		Line 10:
	\|PROCESS={{GO\|id=GO:0006508 \| text = proteolysis}}		\|PROCESS={{GO\|id=GO:0006508 \| text = proteolysis}}
	\|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009007 Ipr009007], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001995 Ipr001995], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001969 Ipr001969]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00077 PF00077]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q7SSI0 Q7SSI0]</span>		\|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009007 Ipr009007], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001995 Ipr001995], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001969 Ipr001969]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00077 PF00077]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q7SSI0 Q7SSI0]</span>
		+	\|CONSURF={{!}}-
		+	{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif\|center]]
		+	{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
		+	{{!}} '''Toggle Conservation Colors:'''
		+	{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
		+	Rows = identical sequences:
		+	<jmol>
		+	<jmolButton>
		+	<script></script>
		+	<text>A [x]</text>
		+	<name>jmb_2nmz_A</name>
		+	<title>toggle chain A</title>
		+	<jsscript>ConsurfChainButton(elementClicked)</jsscript>
		+	<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
		+	</jmolButton>
		+	</jmol>
		+	<jmol>
		+	<jmolButton>
		+	<script></script>
		+	<text>B [x]</text>
		+	<name>jmb_2nmz_B</name>
		+	<title>toggle chain B</title>
		+	<jsscript>ConsurfChainButton(elementClicked)</jsscript>
		+	<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
		+	</jmolButton>
		+	</jmol>
		+
	}}		}}

OCA at 08:29, 17 August 2008

OCA — Sun, 17 Aug 2008 08:29:26 GMT

←Older revision		Revision as of 08:29, 17 August 2008
Line 1:		Line 1:
	{{StructureD		{{StructureD
-	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|2nmz, resolution 0.97Å (<scene name='initialview01'>~~initial~~ scene</scene>)}}}	+	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|2nmz, resolution 0.97Å (<scene name='initialview01'>default scene</scene>)}}}
	\|LIGAND= <scene name='pdbligand=ROC:CIS-N-TERT-BUTYL-DECAHYDRO-2-[2(R)-HYDROXY-4-PHENYL-3(S)-[[N-2-QUINOLYLCARBONYL-L-ASPARAGINYL]AMINO]BUTYL]-(4AS)-ISOQUINOLINE-3(S)-CARBOXAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>		\|LIGAND= <scene name='pdbligand=ROC:CIS-N-TERT-BUTYL-DECAHYDRO-2-[2(R)-HYDROXY-4-PHENYL-3(S)-[[N-2-QUINOLYLCARBONYL-L-ASPARAGINYL]AMINO]BUTYL]-(4AS)-ISOQUINOLINE-3(S)-CARBOXAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
	\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span>		\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span>

OCA at 04:58, 17 August 2008

OCA — Sun, 17 Aug 2008 04:58:59 GMT

←Older revision		Revision as of 04:58, 17 August 2008
Line 1:		Line 1:
	{{StructureD		{{StructureD
-	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|2nmz, resolution 0.97Å (<scene name='~~{{{SCENE\|~~initialview01~~}}}~~'>initial scene</scene>)}}}	+	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|2nmz, resolution 0.97Å (<scene name='initialview01'>initial scene</scene>)}}}
	\|LIGAND= <scene name='pdbligand=ROC:CIS-N-TERT-BUTYL-DECAHYDRO-2-[2(R)-HYDROXY-4-PHENYL-3(S)-[[N-2-QUINOLYLCARBONYL-L-ASPARAGINYL]AMINO]BUTYL]-(4AS)-ISOQUINOLINE-3(S)-CARBOXAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>		\|LIGAND= <scene name='pdbligand=ROC:CIS-N-TERT-BUTYL-DECAHYDRO-2-[2(R)-HYDROXY-4-PHENYL-3(S)-[[N-2-QUINOLYLCARBONYL-L-ASPARAGINYL]AMINO]BUTYL]-(4AS)-ISOQUINOLINE-3(S)-CARBOXAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
	\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span>		\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span>

OCA at 04:57, 17 August 2008

OCA — Sun, 17 Aug 2008 04:57:06 GMT

←Older revision		Revision as of 04:57, 17 August 2008
Line 1:		Line 1:
	{{StructureD		{{StructureD
-	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|2nmz, resolution 0.97Å (<scene name='initialview01'>initial scene</scene>)}}}	+	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|2nmz, resolution 0.97Å (<scene name='{{{SCENE\|initialview01}}}'>initial scene</scene>)}}}
	\|LIGAND= <scene name='pdbligand=ROC:CIS-N-TERT-BUTYL-DECAHYDRO-2-[2(R)-HYDROXY-4-PHENYL-3(S)-[[N-2-QUINOLYLCARBONYL-L-ASPARAGINYL]AMINO]BUTYL]-(4AS)-ISOQUINOLINE-3(S)-CARBOXAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>		\|LIGAND= <scene name='pdbligand=ROC:CIS-N-TERT-BUTYL-DECAHYDRO-2-[2(R)-HYDROXY-4-PHENYL-3(S)-[[N-2-QUINOLYLCARBONYL-L-ASPARAGINYL]AMINO]BUTYL]-(4AS)-ISOQUINOLINE-3(S)-CARBOXAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
	\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span>		\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span>

OCA at 12:58, 29 July 2008

OCA — Tue, 29 Jul 2008 12:58:16 GMT

←Older revision		Revision as of 12:58, 29 July 2008
Line 1:		Line 1:
-	{{~~Structure~~	+	{{StructureD
-	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE=350\|CAPTION= 2nmz, resolution 0.97Å (<scene name='initialview01'>initial scene</scene>)	+	\|PDB= {{{PDB}}}\|SCENE={{{SCENE}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|2nmz, resolution 0.97Å (<scene name='initialview01'>initial scene</scene>)}}}
-	~~\|SITE=~~	+
	\|LIGAND= <scene name='pdbligand=ROC:CIS-N-TERT-BUTYL-DECAHYDRO-2-[2(R)-HYDROXY-4-PHENYL-3(S)-[[N-2-QUINOLYLCARBONYL-L-ASPARAGINYL]AMINO]BUTYL]-(4AS)-ISOQUINOLINE-3(S)-CARBOXAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>		\|LIGAND= <scene name='pdbligand=ROC:CIS-N-TERT-BUTYL-DECAHYDRO-2-[2(R)-HYDROXY-4-PHENYL-3(S)-[[N-2-QUINOLYLCARBONYL-L-ASPARAGINYL]AMINO]BUTYL]-(4AS)-ISOQUINOLINE-3(S)-CARBOXAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
	\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span>		\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span>
Line 8:		Line 7:
	\|RELATEDENTRY=[[2nmw\|2nmw]], [[2nmy\|2nmy]]		\|RELATEDENTRY=[[2nmw\|2nmw]], [[2nmy\|2nmy]]
	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www.ebi.ac.uk/pdbsum/2nmz PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2nmz RCSB]</span>		\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www.ebi.ac.uk/pdbsum/2nmz PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2nmz RCSB]</span>
		+	\|FUNCTION={{GO\|id=GO:0008233 \| text = peptidase activity}}{{GO\|id=GO:0004190 \| text = aspartic-type endopeptidase activity}}{{GO\|id=GO:0016787 \| text = hydrolase activity}}
		+	\|PROCESS={{GO\|id=GO:0006508 \| text = proteolysis}}
		+	\|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009007 Ipr009007], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001995 Ipr001995], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001969 Ipr001969]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00077 PF00077]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q7SSI0 Q7SSI0]</span>
	}}		}}

OCA: Protected "Template:STRUCTURE 2nmz" [edit=sysop:move=sysop]

OCA — Sun, 04 May 2008 06:39:08 GMT

Protected "Template:STRUCTURE 2nmz" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:39, 4 May 2008

OCA: New page: {{Structure |PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE=350|CAPTION= 2nmz, resolution 0.97Å (initial scene) |SITE= |LIGAND= |SITE=
|LIGAND= <scene name='pdbligand=ROC:CIS-N-TERT-BUTYL-DECAHYDRO-2-[2(R)-HYDROXY-4-PHENYL-3(S)-[[N-2-QUINOLYLCARBONYL-L-ASPARAGINYL]AMINO]BUTYL]-(4AS)-ISOQUINOLINE-3(S)-CARBOXAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
|ACTIVITY= [http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] 
|GENE= gag ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 Human immunodeficiency virus 1])
|DOMAIN=[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00077 RVP]
|RELATEDENTRY=[[2nmw|2nmw]], [[2nmy|2nmy]]
|RESOURCES=[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www.ebi.ac.uk/pdbsum/2nmz PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2nmz RCSB]
}}

←Older revision		Revision as of 13:02, 27 February 2013
Line 6:		Line 6:
	\|RELATEDENTRY=[[2nmw\|2nmw]], [[2nmy\|2nmy]], [[2nnk\|2nnk]], [[2nnp\|2nnp]]		\|RELATEDENTRY=[[2nmw\|2nmw]], [[2nmy\|2nmy]], [[2nnk\|2nnk]], [[2nnp\|2nnp]]
	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nmz RCSB], [http://www.ebi.ac.uk/pdbsum/2nmz PDBsum]</span>		\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2nmz RCSB], [http://www.ebi.ac.uk/pdbsum/2nmz PDBsum]</span>
-	\|~~FUNCTION~~=~~{{GO\|id~~=GO:~~0008233 \| text~~ = ~~peptidase activity}}{{GO\|id~~=GO:~~0004190 \| text~~ = ~~aspartic-type endopeptidase activity}}{{GO\|id~~=GO:~~0016787 \| text~~ = ~~hydrolase activity}}~~	+	\|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/domain/2nmzA00 2Nmza00], [http://www.cathdb.info/domain/2nmzB00 2Nmzb00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR021109 Ipr021109], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000721 Ipr000721], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR018061 Ipr018061], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001584 Ipr001584], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR017856 Ipr017856], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002156 Ipr002156], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012344 Ipr012344], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000071 Ipr000071], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR012337 Ipr012337], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001995 Ipr001995], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010999 Ipr010999], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001037 Ipr001037], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010661 Ipr010661], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001969 Ipr001969], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR010659 Ipr010659], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000477 Ipr000477], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008919 Ipr008919], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001878 Ipr001878], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008916 Ipr008916], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003308 Ipr003308]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00077 PF00077]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=138386 d2nmza1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&key=138387 d2nmzb1]</span>
-	~~\|PROCESS~~=~~{{GO\|id~~=GO:~~0006508 \| text~~ = ~~proteolysis}}~~	+
-	~~\|SARESOURCES~~=~~<span class~~=~~'plainlinks'>InterPro~~ : [http://www.ebi.ac.uk/interpro/ISearch?query=~~IPR009007 Ipr009007~~], [http://www.ebi.ac.uk/interpro/ISearch?query=~~IPR001995 Ipr001995~~], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001969 Ipr001969]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00077 PF00077]<br>~~UniProt~~ : [http://ca.~~expasy~~.~~org~~/cgi-~~bin~~/~~niceprot~~.pl?~~Q7SSI0 Q7SSI0~~]</span>	+
	\|uPDB=2NMZ\|CONSURF={{!}}-		\|uPDB=2NMZ\|CONSURF={{!}}-
	{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif\|center]]		{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif\|center]]

←Older revision		Revision as of 12:44, 21 October 2009
Line 1:		Line 1:
	{{Structure		{{Structure
	\|PDB= {{{PDB}}}\|SCENE={{{SCENE\|}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|[[2nmz]], resolution 0.97Å (<scene name='initialview01'>default scene</scene>)}}}		\|PDB= {{{PDB}}}\|SCENE={{{SCENE\|}}}\|SIZE={{{SIZE\|350}}}\|CAPTION={{{CAPTION\|[[2nmz]], resolution 0.97Å (<scene name='initialview01'>default scene</scene>)}}}
-	\|LIGAND= <scene name='pdbligand=ROC:~~CIS-~~N-~~TERT~~-~~BUTYL~~-~~DECAHYDRO~~-2-[2(R)-~~HYDROXY~~-4-~~PHENYL~~-3(S)-~~[[N~~-2-~~QUINOLYLCARBONYL~~-~~L-ASPARAGINYL]AMINO]BUTYL]~~-(~~4AS)~~-~~ISOQUINOLINE~~-~~3(S~~)-~~CARBOXAMIDE~~'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>	+	\|SITE= <scene name='pdbsite=AC1:Binding+Site+For+Residue+So4+A+601'>AC1</scene>, <scene name='pdbsite=AC2:Binding+Site+For+Residue+So4+A+602'>AC2</scene>, <scene name='pdbsite=AC3:Binding+Site+For+Residue+So4+B+603'>AC3</scene> and <scene name='pdbsite=AC4:Binding+Site+For+Residue+Roc+B+401'>AC4</scene>
		+	\|LIGAND= <scene name='pdbligand=ROC:N~1~-{(1S,2R)-1-BENZYL-3-[(3R,4AR,8AR)-3-(TERT-BUTYLCARBAMOYL)OCTAHYDROISOQUINOLIN-2(1H)-YL]-2-HYDROXYPROPYL}-N~2~-(QUINOLIN-2-YLCARBONYL)-L-ASPARTAMIDE'>ROC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
	\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span>		\|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/HIV-1_retropepsin HIV-1 retropepsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.23.16 3.4.23.16] </span>
	\|GENE= gag ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 Human immunodeficiency virus 1])		\|GENE= gag ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 Human immunodeficiency virus 1])
	\|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00077 RVP]</span>		\|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00077 RVP]</span>
-	\|RELATEDENTRY=[[2nmw\|2nmw]], [[2nmy\|2nmy]]	+	\|RELATEDENTRY=[[2nmw\|2nmw]], [[2nmy\|2nmy]], [[2nnk\|2nnk]], [[2nnp\|2nnp]]
	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www.ebi.ac.uk/pdbsum/2nmz PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2nmz RCSB]</span>		\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nmz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nmz OCA], [http://www.ebi.ac.uk/pdbsum/2nmz PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2nmz RCSB]</span>
	\|FUNCTION={{GO\|id=GO:0008233 \| text = peptidase activity}}{{GO\|id=GO:0004190 \| text = aspartic-type endopeptidase activity}}{{GO\|id=GO:0016787 \| text = hydrolase activity}}		\|FUNCTION={{GO\|id=GO:0008233 \| text = peptidase activity}}{{GO\|id=GO:0004190 \| text = aspartic-type endopeptidase activity}}{{GO\|id=GO:0016787 \| text = hydrolase activity}}
	\|PROCESS={{GO\|id=GO:0006508 \| text = proteolysis}}		\|PROCESS={{GO\|id=GO:0006508 \| text = proteolysis}}
	\|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009007 Ipr009007], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001995 Ipr001995], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001969 Ipr001969]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00077 PF00077]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q7SSI0 Q7SSI0]</span>		\|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR009007 Ipr009007], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001995 Ipr001995], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001969 Ipr001969]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00077 PF00077]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q7SSI0 Q7SSI0]</span>
-	\|CONSURF={{!}}-	+	\|uPDB=2NMZ\|CONSURF={{!}}-
	{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif\|center]]		{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif\|center]]
	{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"		{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"