User:Jaime Prilusky/Evolutionary Trace - Revision history

Jaime Prilusky at 12:14, 28 June 2015

Jaime Prilusky — Sun, 28 Jun 2015 12:14:45 GMT

←Older revision		Revision as of 12:14, 28 June 2015
Line 32:		Line 32:
	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/1a09_consurf.spt"</script>		<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/1a09_consurf.spt"</script>
	<pspeed>8</pspeed>		<pspeed>8</pspeed>
-	<caption>~~Some caption here, enabled for wikitext, i.e double square brackets [[3rec]]~~</caption>	+	<caption>Consurf coloring</caption>
	<controls>spin popup</controls>		<controls>spin popup</controls>
	</jmolApplet>		</jmolApplet>
Line 45:		Line 45:
	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select all and not water;dots;spacefill;script "/wiki/ettest/1a09_ETlevels_Jmol.txt";script "/wiki/ettest/ET_coloringscript_Jmol.txt";</script>		<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select all and not water;dots;spacefill;script "/wiki/ettest/1a09_ETlevels_Jmol.txt";script "/wiki/ettest/ET_coloringscript_Jmol.txt";</script>
	<pspeed>8</pspeed>		<pspeed>8</pspeed>
-	<caption>~~Some caption here, enabled for wikitext, i.e double square brackets [[3rec]]~~</caption>	+	<caption>Evolutionary Trace coloring</caption>
	<controls>spin popup</controls>0		<controls>spin popup</controls>0
	</jmolApplet></jmol>		</jmolApplet></jmol>

Jaime Prilusky at 11:59, 28 June 2015

Jaime Prilusky — Sun, 28 Jun 2015 11:59:03 GMT

←Older revision		Revision as of 11:59, 28 June 2015
Line 2:		Line 2:
	This is a test page to test evolutionary coloring generated by the [http://mammoth.bcm.tmc.edu/uet/index.html Evolutionary Trace] server at Baylor College of Medicine.		This is a test page to test evolutionary coloring generated by the [http://mammoth.bcm.tmc.edu/uet/index.html Evolutionary Trace] server at Baylor College of Medicine.

-	<table ><tr>	+	<table ><tr><td colspan='3'>
-		+	<jmol>
		+	<jmolCheckbox>
		+	<target>jmol_1a09</target>
		+	<scriptWhenChecked>set syncMouse on;set syncScript on;sync * on;</scriptWhenChecked>
		+	<scriptWhenUnchecked>sync * off;</scriptWhenUnchecked>
		+	<text>Synchronize the 3 models for rotation with your mouse.</text>
		+	</jmolCheckbox>
		+	</jmol>
		+	</td></tr><tr>
	<td>		<td>
	<jmol><jmolApplet>		<jmol><jmolApplet>
	<title>1a09</title>		<title>1a09</title>
		+	<name>jmol_1a09</name>
	<color>white</color><size>300</size>		<color>white</color><size>300</size>
	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script>		<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script>
Line 19:		Line 28:
	<jmol><jmolApplet>		<jmol><jmolApplet>
	<title>Consurf 1a09</title>		<title>Consurf 1a09</title>
		+	<name>jmol_consurf</name>
	<color>white</color><size>300</size>		<color>white</color><size>300</size>
	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/1a09_consurf.spt"</script>		<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/1a09_consurf.spt"</script>
Line 31:		Line 41:
	<jmol><jmolApplet>		<jmol><jmolApplet>
	<title>ET 1a09</title>		<title>ET 1a09</title>
		+	<name>jmol_ET</name>
	<color>white</color><size>300</size>		<color>white</color><size>300</size>
	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select all and not water;dots;spacefill;script "/wiki/ettest/1a09_ETlevels_Jmol.txt";script "/wiki/ettest/ET_coloringscript_Jmol.txt";</script>		<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select all and not water;dots;spacefill;script "/wiki/ettest/1a09_ETlevels_Jmol.txt";script "/wiki/ettest/ET_coloringscript_Jmol.txt";</script>

Jaime Prilusky at 11:51, 28 June 2015

Jaime Prilusky — Sun, 28 Jun 2015 11:51:15 GMT

←Older revision		Revision as of 11:51, 28 June 2015
Line 32:		Line 32:
	<title>ET 1a09</title>		<title>ET 1a09</title>
	<color>white</color><size>300</size>		<color>white</color><size>300</size>
-	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;script "/wiki/ettest/1a09_ETlevels_Jmol.txt";script "/wiki/ettest/ET_coloringscript_Jmol.txt"</script>	+	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select all and not water;dots;spacefill;script "/wiki/ettest/1a09_ETlevels_Jmol.txt";script "/wiki/ettest/ET_coloringscript_Jmol.txt";</script>
	<pspeed>8</pspeed>		<pspeed>8</pspeed>
	<caption>Some caption here, enabled for wikitext, i.e double square brackets [[3rec]]</caption>		<caption>Some caption here, enabled for wikitext, i.e double square brackets [[3rec]]</caption>
-	<controls>spin popup</controls>	+	<controls>spin popup</controls>0
	</jmolApplet></jmol>		</jmolApplet></jmol>
	</td></tr>		</td></tr>
Line 44:		Line 44:
	<td>[[Image:Scale pyetv.png\|300px]]</td></tr>		<td>[[Image:Scale pyetv.png\|300px]]</td></tr>
	</table>		</table>
-
-
-	<!--
-	<StructureSection load='1a09' size='340' side='right' caption='Caption for this structure' scene=''>
-
-	This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.
-
-	</StructureSection>
-	== References ==
-	<references/>
-	-->

Jaime Prilusky at 11:36, 28 June 2015

Jaime Prilusky — Sun, 28 Jun 2015 11:36:08 GMT

←Older revision		Revision as of 11:36, 28 June 2015
Line 32:		Line 32:
	<title>ET 1a09</title>		<title>ET 1a09</title>
	<color>white</color><size>300</size>		<color>white</color><size>300</size>
-	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script>	+	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;script "/wiki/ettest/1a09_ETlevels_Jmol.txt";script "/wiki/ettest/ET_coloringscript_Jmol.txt"</script>
	<pspeed>8</pspeed>		<pspeed>8</pspeed>
	<caption>Some caption here, enabled for wikitext, i.e double square brackets [[3rec]]</caption>		<caption>Some caption here, enabled for wikitext, i.e double square brackets [[3rec]]</caption>

Jaime Prilusky at 11:32, 28 June 2015

Jaime Prilusky — Sun, 28 Jun 2015 11:32:21 GMT

←Older revision		Revision as of 11:32, 28 June 2015
Line 3:		Line 3:

	<table ><tr>		<table ><tr>
		+
	<td>		<td>
	<jmol><jmolApplet>		<jmol><jmolApplet>
Line 14:		Line 15:
	</jmol>		</jmol>
	</td>		</td>
		+
	<td>		<td>
	<jmol><jmolApplet>		<jmol><jmolApplet>
	<title>Consurf 1a09</title>		<title>Consurf 1a09</title>
	<color>white</color><size>300</size>		<color>white</color><size>300</size>
-	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script>	+	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a0/1a09_consurf.spt"</script>
	<pspeed>8</pspeed>		<pspeed>8</pspeed>
	<caption>Some caption here, enabled for wikitext, i.e double square brackets [[3rec]]</caption>		<caption>Some caption here, enabled for wikitext, i.e double square brackets [[3rec]]</caption>
Line 25:		Line 27:
	</jmol>		</jmol>
	</td>		</td>
		+
	<td>		<td>
	<jmol><jmolApplet>		<jmol><jmolApplet>
Line 42:		Line 45:
	</table>		</table>

-
-	select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dk/1a09_consurf.spt"

	<!--		<!--

Jaime Prilusky at 11:30, 28 June 2015

Jaime Prilusky — Sun, 28 Jun 2015 11:30:36 GMT

←Older revision		Revision as of 11:30, 28 June 2015
Line 1:		Line 1:
	==Evolutionary Trace==		==Evolutionary Trace==
-	This is a test page to ~~display~~ evolutionary coloring generated by the [http://mammoth.bcm.tmc.edu/uet/index.html Evolutionary Trace] server at Baylor College of Medicine.	+	This is a test page to test evolutionary coloring generated by the [http://mammoth.bcm.tmc.edu/uet/index.html Evolutionary Trace] server at Baylor College of Medicine.

-	<table ><tr><td>	+	<table ><tr>
		+	<td>
		+	<jmol><jmolApplet>
		+	<title>1a09</title>
		+	<color>white</color><size>300</size>
		+	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script>
		+	<pspeed>8</pspeed>
		+	<caption>Default coloring for [[1a09]]</caption>
		+	<controls>spin popup</controls>
		+	</jmolApplet>
		+	</jmol>
		+	</td>
		+	<td>
	<jmol><jmolApplet>		<jmol><jmolApplet>
	<title>Consurf 1a09</title>		<title>Consurf 1a09</title>
Line 12:		Line 24:
	</jmolApplet>		</jmolApplet>
	</jmol>		</jmol>
-	</td><td>	+	</td>
		+	<td>
	<jmol><jmolApplet>		<jmol><jmolApplet>
	<title>ET 1a09</title>		<title>ET 1a09</title>
Line 22:		Line 35:
	</jmolApplet></jmol>		</jmolApplet></jmol>
	</td></tr>		</td></tr>
-	<tr valign='top'><td>[[Image:Consurf key small.gif\|300px]]</td><td>[[Image:Scale pyetv.png\|300px]]</td></tr>	+	<tr valign='top'>
		+	<td>
		+	</td>
		+	<td>[[Image:Consurf key small.gif\|300px]]</td>
		+	<td>[[Image:Scale pyetv.png\|300px]]</td></tr>
	</table>		</table>

Jaime Prilusky at 11:28, 28 June 2015

Jaime Prilusky — Sun, 28 Jun 2015 11:28:05 GMT

←Older revision		Revision as of 11:28, 28 June 2015
Line 2:		Line 2:
	This is a test page to display evolutionary coloring generated by the [http://mammoth.bcm.tmc.edu/uet/index.html Evolutionary Trace] server at Baylor College of Medicine.		This is a test page to display evolutionary coloring generated by the [http://mammoth.bcm.tmc.edu/uet/index.html Evolutionary Trace] server at Baylor College of Medicine.

-	<table><tr><td>	+	<table ><tr><td>
	<jmol><jmolApplet>		<jmol><jmolApplet>
	<title>Consurf 1a09</title>		<title>Consurf 1a09</title>
Line 22:		Line 22:
	</jmolApplet></jmol>		</jmolApplet></jmol>
	</td></tr>		</td></tr>
-	<tr><td>[[Image:Consurf key small.gif\|300px~~\|top~~]]</td><td>[[Image:Scale pyetv.png\|300px~~\|top~~]]</td></tr>	+	<tr valign='top'><td>[[Image:Consurf key small.gif\|300px]]</td><td>[[Image:Scale pyetv.png\|300px]]</td></tr>
	</table>		</table>

Jaime Prilusky at 11:26, 28 June 2015

Jaime Prilusky — Sun, 28 Jun 2015 11:26:11 GMT

←Older revision		Revision as of 11:26, 28 June 2015
Line 21:		Line 21:
	<controls>spin popup</controls>		<controls>spin popup</controls>
	</jmolApplet></jmol>		</jmolApplet></jmol>
-	</td></tr></table>	+	</td></tr>
		+	<tr><td>[[Image:Consurf key small.gif\|300px\|top]]</td><td>[[Image:Scale pyetv.png\|300px\|top]]</td></tr>
		+	</table>

Jaime Prilusky at 11:12, 28 June 2015

Jaime Prilusky — Sun, 28 Jun 2015 11:12:32 GMT

←Older revision		Revision as of 11:12, 28 June 2015
Line 4:		Line 4:
	<table><tr><td>		<table><tr><td>
	<jmol><jmolApplet>		<jmol><jmolApplet>
-	<title>1a09</title>	+	<title>Consurf 1a09</title>
	<color>white</color><size>300</size>		<color>white</color><size>300</size>
	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script>		<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script>
Line 14:		Line 14:
	</td><td>		</td><td>
	<jmol><jmolApplet>		<jmol><jmolApplet>
-	<title>1a09</title>	+	<title>ET 1a09</title>
	<color>white</color><size>300</size>		<color>white</color><size>300</size>
	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script>		<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script>

Jaime Prilusky at 11:11, 28 June 2015

Jaime Prilusky — Sun, 28 Jun 2015 11:11:26 GMT

←Older revision		Revision as of 11:11, 28 June 2015
Line 6:		Line 6:
	<title>1a09</title>		<title>1a09</title>
	<color>white</color><size>300</size>		<color>white</color><size>300</size>
-	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;</script>	+	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script>
	<pspeed>8</pspeed>		<pspeed>8</pspeed>
	<caption>Some caption here, enabled for wikitext, i.e double square brackets [[3rec]]</caption>		<caption>Some caption here, enabled for wikitext, i.e double square brackets [[3rec]]</caption>
Line 16:		Line 16:
	<title>1a09</title>		<title>1a09</title>
	<color>white</color><size>300</size>		<color>white</color><size>300</size>
-	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;</script>	+	<script>load =1A09;frank off;load /wiki/extensions/Proteopedia/spt/initialview01.spt;spin off;</script>
	<pspeed>8</pspeed>		<pspeed>8</pspeed>
	<caption>Some caption here, enabled for wikitext, i.e double square brackets [[3rec]]</caption>		<caption>Some caption here, enabled for wikitext, i.e double square brackets [[3rec]]</caption>