User:Karsten Theis/Showcase - Revision history

Karsten Theis at 17:04, 4 April 2024

Karsten Theis — Thu, 04 Apr 2024 17:04:48 GMT

←Older revision		Revision as of 17:04, 4 April 2024
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	<scene name='Glycine/Emartz_ballandstick/1'>ball and stick</scene>		<scene name='Glycine/Emartz_ballandstick/1'>ball and stick</scene>
		+	<scene name='78/786673/Gal_overal_view/1'>GAL</scene>
	=== Access ===		=== Access ===

Karsten Theis at 17:02, 4 April 2024

Karsten Theis — Thu, 04 Apr 2024 17:02:13 GMT

←Older revision		Revision as of 17:02, 4 April 2024
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	<StructureSection load='3rec' size='350' side='right' caption='' scene='37/376372/Overall/3'>		<StructureSection load='3rec' size='350' side='right' caption='' scene='37/376372/Overall/3'>

		+	<scene name='Glycine/Emartz_ballandstick/1'>ball and stick</scene>
	=== Access ===		=== Access ===

Karsten Theis at 16:45, 8 November 2022

Karsten Theis — Tue, 08 Nov 2022 16:45:06 GMT

←Older revision		Revision as of 16:45, 8 November 2022
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	</StructureSection>		</StructureSection>
		+
		+	=== Reach ===
		+
		+	The site is multi-language, multi-cultural, and international.
		+
	=== Animation Repository ===		=== Animation Repository ===

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	[[Image:Salbutamol.gif]]		[[Image:Salbutamol.gif]]
	[[Image:Serpin-movie.gif]]		[[Image:Serpin-movie.gif]]
-
-
-	=== Reach ===
-
-	The site is multi-language, multi-cultural, and international.

Karsten Theis at 16:36, 8 November 2022

Karsten Theis — Tue, 08 Nov 2022 16:36:36 GMT

←Older revision		Revision as of 16:36, 8 November 2022
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	=== Animation Repository ===		=== Animation Repository ===

-	[[Image:Serpin-movie.gif]]
	[[Image:Alpha helix.gif]]		[[Image:Alpha helix.gif]]
	[[Image:1hewB.gif]]		[[Image:1hewB.gif]]
-	[[Image:Insulin.gif]]	+	[[Image:Insulin.gif]][[Image:Ezgif.com-gif-maker(1).gif]]
	[[Image:TRNA.gif]]		[[Image:TRNA.gif]]
	[[Image:Salbutamol.gif]]		[[Image:Salbutamol.gif]]
		+	[[Image:Serpin-movie.gif]]
		+

	=== Reach ===		=== Reach ===

	The site is multi-language, multi-cultural, and international.		The site is multi-language, multi-cultural, and international.

Karsten Theis at 16:21, 8 November 2022

Karsten Theis — Tue, 08 Nov 2022 16:21:13 GMT

←Older revision		Revision as of 16:21, 8 November 2022
Line 6:		Line 6:
	=== Access ===		=== Access ===

-	I made this page today and everyone can view it. There are public pages (wiki-like), personal pages like this, and 3D supplementals to journal articles. To see different 3D visualizations in the Jmol viewer on the right, click on the green links, e.g. this one for <jmol><jmolLink><script> script /scripts/37/376372/Surface/4.spt~~; refresh off~~; spin off; background white; hide water or ligand; ~~refresh on~~</script><text>lysozyme</text></jmolLink> </jmol>. The unique combination of 3D figures, captions, and explanatory text is very powerful. All of the figures are remixed from existing pages.	+	I made this page today and everyone can view it. There are public pages (wiki-like), personal pages like this, and 3D supplementals to journal articles. To see different 3D visualizations in the Jmol viewer on the right, click on the green links, e.g. this one for <jmol><jmolLink><script> script /scripts/37/376372/Surface/4.spt; spin off; background white; hide water or ligand;</script><text>lysozyme</text></jmolLink> </jmol>. The unique combination of 3D figures, captions, and explanatory text is very powerful. All of the figures are remixed from existing pages.

	=== Interactivity ===		=== Interactivity ===

Karsten Theis at 16:20, 8 November 2022

Karsten Theis — Tue, 08 Nov 2022 16:20:38 GMT

←Older revision		Revision as of 16:20, 8 November 2022
Line 6:		Line 6:
	=== Access ===		=== Access ===

-	I made this page today and everyone can view it. There are public pages (wiki-like), personal pages like this, and 3D supplementals to journal articles. To see different 3D visualizations in the Jmol viewer on the right, click on the green links, e.g. this one for <jmol><jmolLink><script> script /scripts/37/376372/Surface/4.spt; background white; hide water or ligand</script><text>lysozyme</text></jmolLink> </jmol>. The unique combination of 3D figures, captions, and explanatory text is very powerful. All of the figures are remixed from existing pages.	+	I made this page today and everyone can view it. There are public pages (wiki-like), personal pages like this, and 3D supplementals to journal articles. To see different 3D visualizations in the Jmol viewer on the right, click on the green links, e.g. this one for <jmol><jmolLink><script> script /scripts/37/376372/Surface/4.spt; refresh off; spin off; background white; hide water or ligand; refresh on</script><text>lysozyme</text></jmolLink> </jmol>. The unique combination of 3D figures, captions, and explanatory text is very powerful. All of the figures are remixed from existing pages.

	=== Interactivity ===		=== Interactivity ===

Karsten Theis at 16:18, 8 November 2022

Karsten Theis — Tue, 08 Nov 2022 16:18:57 GMT

←Older revision		Revision as of 16:18, 8 November 2022
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	<jmol><jmolLink><script>if ({ligand and hidden}.size>0) {display displayed or ligand} else {hide ligand or hidden} </script><text>[± ligand]</text></jmolLink> </jmol>		<jmol><jmolLink><script>if ({ligand and hidden}.size>0) {display displayed or ligand} else {hide ligand or hidden} </script><text>[± ligand]</text></jmolLink> </jmol>

-	<jmol><jmolLink><script>if ({water and ~~visible~~}.size>0) {~~select~~ water~~; spacefill off~~} else {~~select~~ water~~; spacefill 1.0; display displayed~~ or ~~water~~} </script><text>[± water]</text></jmolLink> </jmol>	+	<jmol><jmolLink><script>if ({water and hidden}.size>0) {display displayed or water} else {hide water or hidden} </script><text>[± water]</text></jmolLink> </jmol>

	=== Innovation ===		=== Innovation ===

Karsten Theis at 16:17, 8 November 2022

Karsten Theis — Tue, 08 Nov 2022 16:17:15 GMT

←Older revision		Revision as of 16:17, 8 November 2022
Line 54:		Line 54:
	<jmol><jmolLink><script>if ({ligand and hidden}.size>0) {display displayed or ligand} else {hide ligand or hidden} </script><text>[± ligand]</text></jmolLink> </jmol>		<jmol><jmolLink><script>if ({ligand and hidden}.size>0) {display displayed or ligand} else {hide ligand or hidden} </script><text>[± ligand]</text></jmolLink> </jmol>

-	<jmol><jmolLink><script>if ({water and visible}.size>0) {select water; spacefill off} else {select water; spacefill 1.0} </script><text>[± water]</text></jmolLink> </jmol>	+	<jmol><jmolLink><script>if ({water and visible}.size>0) {select water; spacefill off} else {select water; spacefill 1.0; display displayed or water} </script><text>[± water]</text></jmolLink> </jmol>

	=== Innovation ===		=== Innovation ===
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	<text>Large structures (Eric Martz via FGIJ)</text>		<text>Large structures (Eric Martz via FGIJ)</text>
	</jmolLink>		</jmolLink>
-	</jmol>~~Large structures (Eric Martz via FGIJ)~~	+	</jmol>

	<scene name='82/824000/Contacts/4'>Visualizing contacts (Bob Hanson)</scene>		<scene name='82/824000/Contacts/4'>Visualizing contacts (Bob Hanson)</scene>

Karsten Theis at 16:13, 8 November 2022

Karsten Theis — Tue, 08 Nov 2022 16:13:10 GMT

←Older revision		Revision as of 16:13, 8 November 2022
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	== Proteopedia and Biomolecular Visualization ==		== Proteopedia and Biomolecular Visualization ==
-
-	* access: just a browser, registered users can create pages, remix
-	* unique combination of 3D figures, captions, and explanatory text
-	* innovation in visualization: Eric Martz, Bob Hanson, Weizman Institute team
-	* multi-language, multi-cultural, international


Line 89:		Line 84:
	[[Image:TRNA.gif]]		[[Image:TRNA.gif]]
	[[Image:Salbutamol.gif]]		[[Image:Salbutamol.gif]]
		+
		+	=== Reach ===
		+
		+	The site is multi-language, multi-cultural, and international.

Karsten Theis at 16:12, 8 November 2022

Karsten Theis — Tue, 08 Nov 2022 16:12:21 GMT

←Older revision		Revision as of 16:12, 8 November 2022
Line 7:		Line 7:


-	<StructureSection load='3rec' size='350' side='right' caption='~~Escherichia coli reca protein-bound DNA (PDB entry [[3rec]])~~' scene=''>	+	<StructureSection load='3rec' size='350' side='right' caption='' scene='37/376372/Overall/3'>

	=== Access ===		=== Access ===

-	I made this page today and everyone can view it. There are public pages (wiki-like), personal pages like this, and 3D supplementals to journal articles. To see different 3D visualizations in the Jmol viewer on the right, click on the green links, e.g. this one for <jmol><jmolLink><script> script /scripts/37/376372/Surface/4.spt; background white; hide water or ligand</script><text>lysozyme</text></jmolLink> </jmol>. All of the figures are remixed from existing pages.	+	I made this page today and everyone can view it. There are public pages (wiki-like), personal pages like this, and 3D supplementals to journal articles. To see different 3D visualizations in the Jmol viewer on the right, click on the green links, e.g. this one for <jmol><jmolLink><script> script /scripts/37/376372/Surface/4.spt; background white; hide water or ligand</script><text>lysozyme</text></jmolLink> </jmol>. The unique combination of 3D figures, captions, and explanatory text is very powerful. All of the figures are remixed from existing pages.

	=== Interactivity ===		=== Interactivity ===