User:Michael Strong/H1N1/MP - Revision history

Michael Strong at 22:30, 18 May 2009

Michael Strong — Mon, 18 May 2009 22:30:20 GMT

←Older revision		Revision as of 22:30, 18 May 2009
Line 3:		Line 3:
	==MP1 Protein Structural Homolgy Model ==		==MP1 Protein Structural Homolgy Model ==

-	<applet load='MMP21.pdb' size='300' frame='true' align='center' caption='MP2 Homology Model, Mexico Strain, A/Mexico/InDRE4487/2009, residues 23-60, 82% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/2rlf 2rlf]' scene ='User:Michael_Strong/H1N1/MP/1/2'/>	+	<applet load='MMP21.pdb' size='300' frame='true' align='center' caption='MP2 Homology Model, Mexico Strain, [http://www.ncbi.nlm.nih.gov/nuccore/FJ998211 A/Mexico/InDRE4487/2009 MP1], residues 23-60, 82% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/2rlf 2rlf]' scene ='User:Michael_Strong/H1N1/MP/1/2'/>

	==MP1 Sequence Polymorphisms==		==MP1 Sequence Polymorphisms==
Line 4,170:		Line 4,170:
	==MP2 Protein Structural Homolgy Model ==		==MP2 Protein Structural Homolgy Model ==

-	<applet load='MMP21.pdb' size='300' frame='true' align='center' caption='MP2 Homology Model, Mexico Strain, A/Mexico/InDRE4487/2009, residues 23-60, 82% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/2rlf 2rlf]' scene ='User:Michael_Strong/H1N1/MP2/MSA/1/1'/>	+	<applet load='MMP21.pdb' size='300' frame='true' align='center' caption='MP2 Homology Model, Mexico Strain, [http://www.ncbi.nlm.nih.gov/nuccore/FJ998211 A/Mexico/InDRE4487/2009 MP2], residues 23-60, 82% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/2rlf 2rlf]' scene ='User:Michael_Strong/H1N1/MP2/MSA/1/1'/>

	==MP2 Sequence Polymorphisms ==		==MP2 Sequence Polymorphisms ==

Michael Strong at 22:17, 18 May 2009

Michael Strong — Mon, 18 May 2009 22:17:11 GMT

←Older revision		Revision as of 22:17, 18 May 2009
Line 1:		Line 1:
	[[User:Michael_Strong\|home]] <font color="blue">•</font> [[User:Michael_Strong/H1N1\|H1N1]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/PB2\|PB2]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PB1\|PB1]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PA\|PA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/HA\|HA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NP\|NP]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NA\|NA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/MP\|MP]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NS\|NS]]		[[User:Michael_Strong\|home]] <font color="blue">•</font> [[User:Michael_Strong/H1N1\|H1N1]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/PB2\|PB2]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PB1\|PB1]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PA\|PA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/HA\|HA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NP\|NP]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NA\|NA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/MP\|MP]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NS\|NS]]

-	==MP1 ~~Structure~~ ==	+	==MP1 Protein Structural Homolgy Model ==

	<applet load='MMP21.pdb' size='300' frame='true' align='center' caption='MP2 Homology Model, Mexico Strain, A/Mexico/InDRE4487/2009, residues 23-60, 82% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/2rlf 2rlf]' scene ='User:Michael_Strong/H1N1/MP/1/2'/>		<applet load='MMP21.pdb' size='300' frame='true' align='center' caption='MP2 Homology Model, Mexico Strain, A/Mexico/InDRE4487/2009, residues 23-60, 82% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/2rlf 2rlf]' scene ='User:Michael_Strong/H1N1/MP/1/2'/>
Line 4,168:		Line 4,168:
	</pre>		</pre>

-	==MP2 ~~Structure~~ ==	+	==MP2 Protein Structural Homolgy Model ==

	<applet load='MMP21.pdb' size='300' frame='true' align='center' caption='MP2 Homology Model, Mexico Strain, A/Mexico/InDRE4487/2009, residues 23-60, 82% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/2rlf 2rlf]' scene ='User:Michael_Strong/H1N1/MP2/MSA/1/1'/>		<applet load='MMP21.pdb' size='300' frame='true' align='center' caption='MP2 Homology Model, Mexico Strain, A/Mexico/InDRE4487/2009, residues 23-60, 82% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/2rlf 2rlf]' scene ='User:Michael_Strong/H1N1/MP2/MSA/1/1'/>

Michael Strong at 20:14, 18 May 2009

Michael Strong — Mon, 18 May 2009 20:14:12 GMT

←Older revision		Revision as of 20:14, 18 May 2009
Line 17:		Line 17:
	\|gi\|227831763_A/California/05/2		\|gi\|227831763_A/California/05/2
	\|1		\|1
-	\|<scene name='User:Michael_Strong/H1N1/MP/1/2'>3</scene>	+	\|<scene name='User:Michael_Strong/H1N1/MP/3/2'>3</scene>
	\|----		\|----
	\|MP1		\|MP1

Michael Strong at 20:09, 18 May 2009

Michael Strong — Mon, 18 May 2009 20:09:06 GMT

←Older revision		Revision as of 20:09, 18 May 2009
Line 2:		Line 2:

	==MP1 Structure ==		==MP1 Structure ==
-	<scene ~~name~~='User:Michael_Strong/H1N1/MP/1/2'~~>TextToBeDisplayed<~~/~~scene~~>	+
		+	<applet load='MMP21.pdb' size='300' frame='true' align='center' caption='MP2 Homology Model, Mexico Strain, A/Mexico/InDRE4487/2009, residues 23-60, 82% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/2rlf 2rlf]' scene ='User:Michael_Strong/H1N1/MP/1/2'/>

	==MP1 Sequence Polymorphisms==		==MP1 Sequence Polymorphisms==

Michael Strong at 20:06, 18 May 2009

Michael Strong — Mon, 18 May 2009 20:06:54 GMT

←Older revision		Revision as of 20:06, 18 May 2009
Line 2:		Line 2:

	==MP1 Structure ==		==MP1 Structure ==
		+	<scene name='User:Michael_Strong/H1N1/MP/1/2'>TextToBeDisplayed</scene>

	==MP1 Sequence Polymorphisms==		==MP1 Sequence Polymorphisms==
Line 15:		Line 16:
	\|gi\|227831763_A/California/05/2		\|gi\|227831763_A/California/05/2
	\|1		\|1
		+	\|<scene name='User:Michael_Strong/H1N1/MP/1/2'>3</scene>
	\|----		\|----
	\|MP1		\|MP1

Michael Strong at 19:32, 18 May 2009

Michael Strong — Mon, 18 May 2009 19:32:16 GMT

(Difference between revisions)

Michael Strong at 19:28, 18 May 2009

Michael Strong — Mon, 18 May 2009 19:28:30 GMT

←Older revision		Revision as of 19:28, 18 May 2009
Line 3,735:		Line 3,735:


		+	</pre>
		+
		+	==MP2 Structure ==
		+
		+	<applet load='MMP21.pdb' size='300' frame='true' align='center' caption='MP2 Homology Model, Mexico Strain, A/Mexico/InDRE4487/2009, residues 23-60, 82% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/2rlf 2rlf]' scene ='User:Michael_Strong/H1N1/MP2/MSA/1/1'/>
		+
		+	==MP2 Sequence Polymorphisms ==
		+
		+	{\| class="wikitable"
		+	\|Protein
		+	\|Polymorphism
		+	\|Strain with Polymorphism
		+	\|Number of Strains with Polymorphism
		+	\|----
		+	\|MP2
		+	\|L3P
		+	\|gi\|227831764_A/California/05/2
		+	\|1
		+	\|----
		+	\|MP2
		+	\|Y52H
		+	\|gi\|229609551_A/Stockholm/28/20
		+	\|1
		+	\|<scene name='User:Michael_Strong/H1N1/MP2/MSA/52/1'>52</scene>
		+	\|----
		+	\|MP2
		+	\|T65M
		+	\|gi\|229536073_A/Texas/07/2009
		+	\|1
		+	\|----
		+	\|MP2
		+	\|S82N
		+	\|gi\|237511788_A/Mexico/4108/200
		+	\|1
		+	\|----
		+	\|}
		+
		+	==MP2 Multiple Sequence Alignment ==
		+
		+	H1N1 Swine Flu Multiple Sequence Alignment of MP2 Protein, 64 sequences
		+
		+	<pre>
		+	gi\|229892724_A/Canada-NS/RV153 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229368682_A/Denmark/513/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229299506_A/Texas/05/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227977141_A/California/07/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227977109_A/California/04/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227977121_A/California/08/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396490_A/Ohio/07/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396474_A/New_York/19/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396458_A/Texas/06/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396370_A/New_York/11/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229484037_A/Mexico/InDRE448 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229462699_A/Valencia/GP4/20 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229462687_A/Castilla-La_Man MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229535995_A/South_Carolina/ MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229536119_A/Michigan/02/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229536047_A/Arizona/02/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229783401_A/New_York/1682/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229892718_A/Mexico/InDRE411 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229892713_A/Canada-NS/RV153 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|237511785_A/Mexico/4603/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229536073_A/Texas/07/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|237511788_A/Mexico/4108/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|228481040_A/Auckland/2/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396384_A/New_York/18/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396430_A/New_York/10/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229484040_A/Canada-ON/RV152 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229462711_A/Pais_Vasco/GP20 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229535814_A/Texas/09/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229535795_A/New_York/22/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229536086_A/Indiana/09/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229536020_A/Arizona/01/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229783380_A/New_York/1669/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229892715_A/Canada-ON/RV152 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229892721_A/Canada-AB/RV153 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|237511761_A/Mexico/4115/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|237624333_A/swine/Alberta/O MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|237511767_A/Mexico/4604/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229892727_A/Canada-ON/RV152 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229783371_A/Korea/01/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229598892_A/Texas/15/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229535832_A/California/14/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229536036_A/Minnesota/02/20 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229535982_A/Texas/08/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229462723_A/Castilla-La_Man MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229484034_A/Canada-NS/RV153 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396360_A/New_York/06/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396446_A/New_York/15/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|228481037_A/Auckland/3/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229536062_A/New_York/20/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396497_A/Ohio/07/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227977153_A/California/08/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227831781_A/California/06/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227977165_A/California/07/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227831804_A/California/09/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229299526_A/Texas/04/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227831795_A/Texas/05/2009 --LLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 48
		+	gi\|237511779_A/Mexico/4486/200 ---LTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 47
		+	gi\|227977102_A/California/10/2 ---LTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 47
		+	gi\|237511782_A/Mexico/4482/200 ----TEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 46
		+	gi\|227809837_A/California/04/2 ----TEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 46
		+	gi\|227831822_A/Texas/04/2009 ----TEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 46
		+	gi\|227831829_A/Texas/04/2009 ----TEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 46
		+	gi\|227831764_A/California/05/2 MSPLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229609551_A/Stockholm/28/20 --------TPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 42
		+	******************************************
		+
		+	gi\|229892724_A/Canada-NS/RV153 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229368682_A/Denmark/513/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIE-- 95
		+	gi\|229299506_A/Texas/05/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227977141_A/California/07/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227977109_A/California/04/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227977121_A/California/08/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396490_A/Ohio/07/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396474_A/New_York/19/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396458_A/Texas/06/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396370_A/New_York/11/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229484037_A/Mexico/InDRE448 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229462699_A/Valencia/GP4/20 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229462687_A/Castilla-La_Man IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229535995_A/South_Carolina/ IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229536119_A/Michigan/02/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229536047_A/Arizona/02/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229783401_A/New_York/1682/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229892718_A/Mexico/InDRE411 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229892713_A/Canada-NS/RV153 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|237511785_A/Mexico/4603/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229536073_A/Texas/07/2009 IYRRFKYGLKRGPSMEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|237511788_A/Mexico/4108/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQNAVDVDDGHFVNIELE 97
		+	gi\|228481040_A/Auckland/2/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396384_A/New_York/18/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396430_A/New_York/10/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229484040_A/Canada-ON/RV152 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229462711_A/Pais_Vasco/GP20 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229535814_A/Texas/09/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229535795_A/New_York/22/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229536086_A/Indiana/09/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229536020_A/Arizona/01/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229783380_A/New_York/1669/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229892715_A/Canada-ON/RV152 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229892721_A/Canada-AB/RV153 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|237511761_A/Mexico/4115/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|237624333_A/swine/Alberta/O IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|237511767_A/Mexico/4604/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229892727_A/Canada-ON/RV152 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229783371_A/Korea/01/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229598892_A/Texas/15/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229535832_A/California/14/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229536036_A/Minnesota/02/20 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229535982_A/Texas/08/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229462723_A/Castilla-La_Man IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229484034_A/Canada-NS/RV153 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396360_A/New_York/06/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396446_A/New_York/15/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|228481037_A/Auckland/3/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229536062_A/New_York/20/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396497_A/Ohio/07/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227977153_A/California/08/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227831781_A/California/06/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227977165_A/California/07/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227831804_A/California/09/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229299526_A/Texas/04/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227831795_A/Texas/05/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 95
		+	gi\|237511779_A/Mexico/4486/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 94
		+	gi\|227977102_A/California/10/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 94
		+	gi\|237511782_A/Mexico/4482/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 93
		+	gi\|227809837_A/California/04/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 93
		+	gi\|227831822_A/Texas/04/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 93
		+	gi\|227831829_A/Texas/04/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 93
		+	gi\|227831764_A/California/05/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229609551_A/Stockholm/28/20 IHRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 89
		+	:********* ************.***********
	</pre>		</pre>

Michael Strong at 23:00, 7 May 2009

Michael Strong — Thu, 07 May 2009 23:00:00 GMT

←Older revision		Revision as of 23:00, 7 May 2009
Line 1:		Line 1:
-	[[User:Michael_Strong\|home]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/\|H1N1]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/PB2\|PB2]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PB1\|PB1]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PA\|PA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/HA\|HA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NP\|NP]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NA\|NA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/MP\|MP]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NS\|NS]]	+	[[User:Michael_Strong\|home]] <font color="blue">•</font> [[User:Michael_Strong/H1N1\|H1N1]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/PB2\|PB2]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PB1\|PB1]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PA\|PA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/HA\|HA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NP\|NP]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NA\|NA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/MP\|MP]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NS\|NS]]

Michael Strong at 22:55, 7 May 2009

Michael Strong — Thu, 07 May 2009 22:55:54 GMT

←Older revision		Revision as of 22:55, 7 May 2009
Line 1:		Line 1:
		+	[[User:Michael_Strong\|home]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/\|H1N1]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/PB2\|PB2]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PB1\|PB1]]<font color="blue">•</font> [[User:Michael_Strong/H1N1/PA\|PA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/HA\|HA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NP\|NP]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NA\|NA]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/MP\|MP]] <font color="blue">•</font> [[User:Michael_Strong/H1N1/NS\|NS]]
		+
		+
	<pre>		<pre>

Michael Strong at 22:19, 7 May 2009

Michael Strong — Thu, 07 May 2009 22:19:43 GMT

←Older revision		Revision as of 22:19, 7 May 2009
Line 443:		Line 443:
	QKRMGVQ+QRFK		QKRMGVQ+QRFK
	Sbjct 241 QKRMGVQIQRFK 252		Sbjct 241 QKRMGVQIQRFK 252
-
-
-	>gb\|ACP41108.1\| matrix protein 1 [Influenza A virus (A/California/04/2009(H1N1))]
-	gb\|ACP41960.1\| matrix protein 1 [Influenza A virus (A/Texas/04/2009(H1N1))]
-	gb\|ACP41964.1\| matrix protein 1 [Influenza A virus (A/Texas/04/2009(H1N1))]
-	Length=248
-
-	Score = 518 bits (1333), Expect = 2e-145, Method: Compositional matrix adjust.
-	Identities = 248/248 (100%), Positives = 248/248 (100%), Gaps = 0/248 (0%)
-
-	Query 5 TEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVF 64
-	TEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVF
-	Sbjct 1 TEVETYVLSIIPSGPLKAEIAQRLESVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVF 60
-
-	Query 65 TLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGAL 124
-	TLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGAL
-	Sbjct 61 TLTVPSERGLQRRRFVQNALNGNGDPNNMDRAVKLYKKLKREITFHGAKEVSLSYSTGAL 120
-
-	Query 125 ASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHRQMATTTNPLIRHENRMVLAST 184
-	ASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHRQMATTTNPLIRHENRMVLAST
-	Sbjct 121 ASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQHRSHRQMATTTNPLIRHENRMVLAST 180
-
-	Query 185 TAKAMEQMAGSSEQAAEAMEVANQTRQMVHAMRTIGTHPSSSAGLKDDLLENLQAYQKRM 244
-	TAKAMEQMAGSSEQAAEAMEVANQTRQMVHAMRTIGTHPSSSAGLKDDLLENLQAYQKRM
-	Sbjct 181 TAKAMEQMAGSSEQAAEAMEVANQTRQMVHAMRTIGTHPSSSAGLKDDLLENLQAYQKRM 240
-
-	Query 245 GVQMQRFK 252
-	GVQMQRFK
-	Sbjct 241 GVQMQRFK 248

←Older revision		Revision as of 19:28, 18 May 2009
Line 3,735:		Line 3,735:


		+	</pre>
		+
		+	==MP2 Structure ==
		+
		+	<applet load='MMP21.pdb' size='300' frame='true' align='center' caption='MP2 Homology Model, Mexico Strain, A/Mexico/InDRE4487/2009, residues 23-60, 82% sequence identity to pdp template [http://proteopedia.org/wiki/index.php/2rlf 2rlf]' scene ='User:Michael_Strong/H1N1/MP2/MSA/1/1'/>
		+
		+	==MP2 Sequence Polymorphisms ==
		+
		+	{\| class="wikitable"
		+	\|Protein
		+	\|Polymorphism
		+	\|Strain with Polymorphism
		+	\|Number of Strains with Polymorphism
		+	\|----
		+	\|MP2
		+	\|L3P
		+	\|gi\|227831764_A/California/05/2
		+	\|1
		+	\|----
		+	\|MP2
		+	\|Y52H
		+	\|gi\|229609551_A/Stockholm/28/20
		+	\|1
		+	\|<scene name='User:Michael_Strong/H1N1/MP2/MSA/52/1'>52</scene>
		+	\|----
		+	\|MP2
		+	\|T65M
		+	\|gi\|229536073_A/Texas/07/2009
		+	\|1
		+	\|----
		+	\|MP2
		+	\|S82N
		+	\|gi\|237511788_A/Mexico/4108/200
		+	\|1
		+	\|----
		+	\|}
		+
		+	==MP2 Multiple Sequence Alignment ==
		+
		+	H1N1 Swine Flu Multiple Sequence Alignment of MP2 Protein, 64 sequences
		+
		+	<pre>
		+	gi\|229892724_A/Canada-NS/RV153 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229368682_A/Denmark/513/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229299506_A/Texas/05/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227977141_A/California/07/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227977109_A/California/04/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227977121_A/California/08/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396490_A/Ohio/07/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396474_A/New_York/19/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396458_A/Texas/06/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396370_A/New_York/11/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229484037_A/Mexico/InDRE448 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229462699_A/Valencia/GP4/20 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229462687_A/Castilla-La_Man MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229535995_A/South_Carolina/ MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229536119_A/Michigan/02/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229536047_A/Arizona/02/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229783401_A/New_York/1682/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229892718_A/Mexico/InDRE411 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229892713_A/Canada-NS/RV153 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|237511785_A/Mexico/4603/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229536073_A/Texas/07/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|237511788_A/Mexico/4108/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|228481040_A/Auckland/2/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396384_A/New_York/18/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396430_A/New_York/10/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229484040_A/Canada-ON/RV152 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229462711_A/Pais_Vasco/GP20 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229535814_A/Texas/09/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229535795_A/New_York/22/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229536086_A/Indiana/09/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229536020_A/Arizona/01/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229783380_A/New_York/1669/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229892715_A/Canada-ON/RV152 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229892721_A/Canada-AB/RV153 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|237511761_A/Mexico/4115/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|237624333_A/swine/Alberta/O MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|237511767_A/Mexico/4604/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229892727_A/Canada-ON/RV152 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229783371_A/Korea/01/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229598892_A/Texas/15/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229535832_A/California/14/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229536036_A/Minnesota/02/20 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229535982_A/Texas/08/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229462723_A/Castilla-La_Man MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229484034_A/Canada-NS/RV153 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396360_A/New_York/06/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396446_A/New_York/15/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|228481037_A/Auckland/3/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229536062_A/New_York/20/200 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229396497_A/Ohio/07/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227977153_A/California/08/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227831781_A/California/06/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227977165_A/California/07/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227831804_A/California/09/2 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229299526_A/Texas/04/2009 MSLLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|227831795_A/Texas/05/2009 --LLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 48
		+	gi\|237511779_A/Mexico/4486/200 ---LTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 47
		+	gi\|227977102_A/California/10/2 ---LTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 47
		+	gi\|237511782_A/Mexico/4482/200 ----TEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 46
		+	gi\|227809837_A/California/04/2 ----TEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 46
		+	gi\|227831822_A/Texas/04/2009 ----TEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 46
		+	gi\|227831829_A/Texas/04/2009 ----TEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 46
		+	gi\|227831764_A/California/05/2 MSPLTEVETPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 50
		+	gi\|229609551_A/Stockholm/28/20 --------TPTRSEWECRCSDSSDPLVIAANIIGILHLILWITDRLFFKC 42
		+	******************************************
		+
		+	gi\|229892724_A/Canada-NS/RV153 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229368682_A/Denmark/513/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIE-- 95
		+	gi\|229299506_A/Texas/05/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227977141_A/California/07/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227977109_A/California/04/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227977121_A/California/08/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396490_A/Ohio/07/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396474_A/New_York/19/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396458_A/Texas/06/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396370_A/New_York/11/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229484037_A/Mexico/InDRE448 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229462699_A/Valencia/GP4/20 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229462687_A/Castilla-La_Man IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229535995_A/South_Carolina/ IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229536119_A/Michigan/02/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229536047_A/Arizona/02/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229783401_A/New_York/1682/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229892718_A/Mexico/InDRE411 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229892713_A/Canada-NS/RV153 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|237511785_A/Mexico/4603/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229536073_A/Texas/07/2009 IYRRFKYGLKRGPSMEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|237511788_A/Mexico/4108/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQNAVDVDDGHFVNIELE 97
		+	gi\|228481040_A/Auckland/2/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396384_A/New_York/18/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396430_A/New_York/10/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229484040_A/Canada-ON/RV152 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229462711_A/Pais_Vasco/GP20 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229535814_A/Texas/09/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229535795_A/New_York/22/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229536086_A/Indiana/09/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229536020_A/Arizona/01/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229783380_A/New_York/1669/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229892715_A/Canada-ON/RV152 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229892721_A/Canada-AB/RV153 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|237511761_A/Mexico/4115/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|237624333_A/swine/Alberta/O IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|237511767_A/Mexico/4604/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229892727_A/Canada-ON/RV152 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229783371_A/Korea/01/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229598892_A/Texas/15/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229535832_A/California/14/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229536036_A/Minnesota/02/20 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229535982_A/Texas/08/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229462723_A/Castilla-La_Man IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229484034_A/Canada-NS/RV153 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396360_A/New_York/06/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396446_A/New_York/15/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|228481037_A/Auckland/3/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229536062_A/New_York/20/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229396497_A/Ohio/07/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227977153_A/California/08/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227831781_A/California/06/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227977165_A/California/07/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227831804_A/California/09/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229299526_A/Texas/04/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|227831795_A/Texas/05/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 95
		+	gi\|237511779_A/Mexico/4486/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 94
		+	gi\|227977102_A/California/10/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 94
		+	gi\|237511782_A/Mexico/4482/200 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 93
		+	gi\|227809837_A/California/04/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 93
		+	gi\|227831822_A/Texas/04/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 93
		+	gi\|227831829_A/Texas/04/2009 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 93
		+	gi\|227831764_A/California/05/2 IYRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 97
		+	gi\|229609551_A/Stockholm/28/20 IHRRFKYGLKRGPSTEGVPESMREEYQQEQQSAVDVDDGHFVNIELE 89
		+	:********* ************.***********
	</pre>		</pre>