User:Nicholas P. Taliceo/Sandbox - Revision history

Karsten Theis: /* Function */

Karsten Theis — Tue, 23 Dec 2014 22:29:30 GMT

Function

←Older revision		Revision as of 22:29, 23 December 2014
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	== Function ==		== Function ==
	The protein sits on the surface of a membrane, and makes prostaglandin hormones when not inhibited. There is a nice [http://www.rcsb.org/pdb/education_discussion/molecule_of_the_month/images/4cox_tunnel.gif figure] of the protein and the membrane in a molecule of the month article by David Goodsell.		The protein sits on the surface of a membrane, and makes prostaglandin hormones when not inhibited. There is a nice [http://www.rcsb.org/pdb/education_discussion/molecule_of_the_month/images/4cox_tunnel.gif figure] of the protein and the membrane in a molecule of the month article by David Goodsell.
		+
		+	<scene name='60/609967/With_membrane/1'>Membrane orientation</scene>

Karsten Theis at 18:46, 9 December 2014

Karsten Theis — Tue, 09 Dec 2014 18:46:49 GMT

←Older revision		Revision as of 18:46, 9 December 2014
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	</StructureSection>		</StructureSection>
	== Function ==		== Function ==
-	The protein sits on the surface of a membrane, and makes prostaglandin hormones when not inhibited. There is a nice [~~http://~~http://www.rcsb.org/pdb/education_discussion/molecule_of_the_month/images/4cox_tunnel.gif figure] of the protein and the membrane in a molecule of the month article by David Goodsell.	+	The protein sits on the surface of a membrane, and makes prostaglandin hormones when not inhibited. There is a nice [http://www.rcsb.org/pdb/education_discussion/molecule_of_the_month/images/4cox_tunnel.gif figure] of the protein and the membrane in a molecule of the month article by David Goodsell.

Karsten Theis at 18:40, 9 December 2014

Karsten Theis — Tue, 09 Dec 2014 18:40:18 GMT

←Older revision		Revision as of 18:40, 9 December 2014
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	*<jmol>		*<jmol>
	<jmolLink>		<jmolLink>
-	<script> select ~~111~~:B; color CPK; spacefill 23%; var a = [300,250,200,170,140,120,100]; for(var i IN a) {wireframe @i; delay 0.4;}	+	<script> select 701:A; color CPK; spacefill 23%; var a = [300,250,200,170,140,120,100]; for(var i IN a) {wireframe @i; delay 0.4;}
	</script>		</script>
	<text>Show the atoms </text>		<text>Show the atoms </text>

Karsten Theis at 18:39, 9 December 2014

Karsten Theis — Tue, 09 Dec 2014 18:39:03 GMT

←Older revision		Revision as of 18:39, 9 December 2014
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	*<jmol>		*<jmol>
	<jmolLink>		<jmolLink>
-	<script> select ~~601~~:B; color CPK; spacefill 23%; var a = [300,250,200,170,140,120,100]; for(var i IN a) {wireframe @i; delay 0.4;}	+	<script> select 111:B; color CPK; spacefill 23%; var a = [300,250,200,170,140,120,100]; for(var i IN a) {wireframe @i; delay 0.4;}
	</script>		</script>
	<text>Show the atoms </text>		<text>Show the atoms </text>

Karsten Theis at 18:37, 9 December 2014

Karsten Theis — Tue, 09 Dec 2014 18:37:32 GMT

←Older revision		Revision as of 18:37, 9 December 2014
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	<scene name='60/609967/Ibuprofen_single_molecule/5'>Ibuprofen Single Molecule</scene>		<scene name='60/609967/Ibuprofen_single_molecule/5'>Ibuprofen Single Molecule</scene>

-	<~~scene name~~=~~'60~~/~~609967/Ibuprofen_single_molecule/7'~~>~~Ibuprofen Single Molecule~~</~~scene~~>	+	*<jmol>
-		+	<jmolLink>
-	<~~scene name='60~~/~~609967/Ibuprofen_only/1'~~>~~Ibuprofen Molecules~~</~~scene~~>	+	<script> select 601:B; color CPK; spacefill 23%; var a = [300,250,200,170,140,120,100]; for(var i IN a) {wireframe @i; delay 0.4;}
		+	</script>
		+	<text>Show the atoms </text>
		+	</jmolLink>
		+	</jmol>


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	<scene name='60/609967/Allatom/4'>Protein buries ligands</scene>		<scene name='60/609967/Allatom/4'>Protein buries ligands</scene>

-	<jmol>	+	*<jmol>
	<jmolLink>		<jmolLink>
	<script> slab on; depth 40; var a = [90,80,70,60,55,54,53,52,51]; for(var i IN a) {slab @i; delay 0.4;}		<script> slab on; depth 40; var a = [90,80,70,60,55,54,53,52,51]; for(var i IN a) {slab @i; delay 0.4;}
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	</jmol>		</jmol>

-	<jmol>	+	*<jmol>
	<jmolLink>		<jmolLink>
	<script> slab on; depth 40; var a = [51,52,53,54,55,60,70,80,90,100]; for(var i IN a) {slab @i; delay 0.4;}		<script> slab on; depth 40; var a = [51,52,53,54,55,60,70,80,90,100]; for(var i IN a) {slab @i; delay 0.4;}

Karsten Theis at 18:35, 9 December 2014

Karsten Theis — Tue, 09 Dec 2014 18:35:25 GMT

←Older revision		Revision as of 18:35, 9 December 2014
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-	~~==Structure of the Ibuprofen Molecule==~~	+	<StructureSection load='1eqg' size='340' side='right' caption='Caption for this structure' scene='60/609967/Ibuprofen_single_molecule/5'>
-	<StructureSection load='1eqg' size='340' side='right' caption='Caption for this structure' scene=''>	+
-	~~This is a default text for your page~~ '''~~Nicholas P. Taliceo/Sandbox~~'''~~. Click above on~~ ''~~'edit this page''' to modify. Be careful with the < and > signs.~~	+	'''Structure of the Ibuprofen Molecule'''
-	~~You may include any references to papers as in: the use of JSmol in Proteopedia~~ <~~ref~~>~~DOI 10.1002~~/~~ijch.201300024~~</~~ref~~> ~~or to the article describing Jmol~~ <~~ref~~>~~PMID:21638687~~</~~ref~~> to the ~~rescue.~~	+
		+	<scene name='60/609967/Ibuprofen_single_molecule/5'>Ibuprofen Single Molecule</scene>
		+
		+	<scene name='60/609967/Ibuprofen_single_molecule/7'>Ibuprofen Single Molecule</scene>
		+
		+	<scene name='60/609967/Ibuprofen_only/1'>Ibuprofen Molecules</scene>
		+
		+
		+
		+	'''Ibuprofen binds to the protein cyclooxygenase'''
		+

	<scene name='60/609967/Allatom/4'>Protein buries ligands</scene>		<scene name='60/609967/Allatom/4'>Protein buries ligands</scene>
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	</jmol>		</jmol>

-	== Function ==

-	== Disease ==
-
-	<scene name='60/609967/Ibuprofen_single_molecule/5'>Ibuprofen Single Molecule</scene>
-
-	<scene name='60/609967/Ibuprofen_single_molecule/7'>Ibuprofen Single Molecule</scene>
-
-	<scene name='60/609967/Ibuprofen_only/1'>Ibuprofen Molecules</scene>
-	== Relevance ==
-
-	== Structural highlights ==
-
-	This is a sample scene created with SAT to <scene name="/12/3456/Sample/1">color</scene> by Group, and another to make <scene name="/12/3456/Sample/2">a transparent representation</scene> of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

	</StructureSection>		</StructureSection>
-	== ~~References~~ ==	+	== Function ==
-	~~<references~~/>	+	The protein sits on the surface of a membrane, and makes prostaglandin hormones when not inhibited. There is a nice [http://http://www.rcsb.org/pdb/education_discussion/molecule_of_the_month/images/4cox_tunnel.gif figure] of the protein and the membrane in a molecule of the month article by David Goodsell.

Nicholas P. Taliceo at 19:29, 8 December 2014

Nicholas P. Taliceo — Mon, 08 Dec 2014 19:29:26 GMT

←Older revision		Revision as of 19:29, 8 December 2014
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	You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.		You may include any references to papers as in: the use of JSmol in Proteopedia <ref>DOI 10.1002/ijch.201300024</ref> or to the article describing Jmol <ref>PMID:21638687</ref> to the rescue.

-	<scene name='60/609967/Allatom/3'>Protein buries ligands</scene>	+	<scene name='60/609967/Allatom/4'>Protein buries ligands</scene>

	<jmol>		<jmol>
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	<jmol>		<jmol>
	<jmolLink>		<jmolLink>
-	<script> slab on; depth 40; var a = [51,52,53,54,55,60,70,80,90]; for(var i IN a) {slab @i; delay 0.4;}	+	<script> slab on; depth 40; var a = [51,52,53,54,55,60,70,80,90,100]; for(var i IN a) {slab @i; delay 0.4;}
	</script>		</script>
	<text>Slab out of center</text>		<text>Slab out of center</text>

Nicholas P. Taliceo at 19:52, 3 December 2014

Nicholas P. Taliceo — Wed, 03 Dec 2014 19:52:38 GMT

←Older revision		Revision as of 19:52, 3 December 2014
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	<scene name='60/609967/Ibuprofen_single_molecule/5'>Ibuprofen Single Molecule</scene>		<scene name='60/609967/Ibuprofen_single_molecule/5'>Ibuprofen Single Molecule</scene>
		+
	<scene name='60/609967/Ibuprofen_single_molecule/7'>Ibuprofen Single Molecule</scene>		<scene name='60/609967/Ibuprofen_single_molecule/7'>Ibuprofen Single Molecule</scene>
		+
	<scene name='60/609967/Ibuprofen_only/1'>Ibuprofen Molecules</scene>		<scene name='60/609967/Ibuprofen_only/1'>Ibuprofen Molecules</scene>
	== Relevance ==		== Relevance ==

Nicholas P. Taliceo at 19:51, 3 December 2014

Nicholas P. Taliceo — Wed, 03 Dec 2014 19:51:38 GMT

←Older revision		Revision as of 19:51, 3 December 2014
Line 25:		Line 25:

	== Disease ==		== Disease ==
-	<scene name='60/609967/Ibuprofen_only/1'>Ibuprofen Molecules</scene>

	<scene name='60/609967/Ibuprofen_single_molecule/5'>Ibuprofen Single Molecule</scene>		<scene name='60/609967/Ibuprofen_single_molecule/5'>Ibuprofen Single Molecule</scene>
	<scene name='60/609967/Ibuprofen_single_molecule/7'>Ibuprofen Single Molecule</scene>		<scene name='60/609967/Ibuprofen_single_molecule/7'>Ibuprofen Single Molecule</scene>
		+	<scene name='60/609967/Ibuprofen_only/1'>Ibuprofen Molecules</scene>
	== Relevance ==		== Relevance ==

Nicholas P. Taliceo at 19:49, 3 December 2014

Nicholas P. Taliceo — Wed, 03 Dec 2014 19:49:01 GMT

←Older revision		Revision as of 19:49, 3 December 2014
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	<scene name='60/609967/Ibuprofen_single_molecule/5'>Ibuprofen Single Molecule</scene>		<scene name='60/609967/Ibuprofen_single_molecule/5'>Ibuprofen Single Molecule</scene>
-	<scene name='60/609967/Ibuprofen_single_molecule/6'>Ibuprofen Single Molecule</scene>	+	<scene name='60/609967/Ibuprofen_single_molecule/7'>Ibuprofen Single Molecule</scene>
	== Relevance ==		== Relevance ==