User:Tilman Schirmer/Sandbox 99 - Revision history

Tilman Schirmer: /* Torsion angle φ restricted for Pro */

Tilman Schirmer — Thu, 19 Sep 2019 10:15:38 GMT

Torsion angle φ restricted for Pro

←Older revision		Revision as of 10:15, 19 September 2019
Line 28:		Line 28:
	Due to the ring closure of the Pro side-chain the torsion around the N - C<sub>α</sub> is considerably <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_211_in_trans_conformation/3'>restricted </scene> to a value between -50° to -90°.		Due to the ring closure of the Pro side-chain the torsion around the N - C<sub>α</sub> is considerably <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_211_in_trans_conformation/3'>restricted </scene> to a value between -50° to -90°.

		+
		+	<scene name='38/387166/Pro_211_in_trans_conformation/6'>TextToBeDisplayed</scene>

	====References====		====References====

Tilman Schirmer: /* Cis peptide bonds */

Tilman Schirmer — Thu, 19 Sep 2019 10:11:08 GMT

Cis peptide bonds

←Older revision		Revision as of 10:11, 19 September 2019
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-
-	<scene name='38/387166/Pro_213_in_cis_conformation/6'>cis-Pro</scene>
-
-	<scene name='38/387166/Pro_213_in_trans_conformation/2'>trans-Pro</scene>
-
-	<scene name='38/387166/Pro_211_in_trans_conformation/4'>TextToBeDisplayed</scene>
-
-
-
-	The ω torsion angle can adopt a value close to 0° (cis-conformation), when a Pro residue is the following residue (Xaa-Pro peptide bond). In this situation a <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_213_in_cis_conformation/6'>cis-Pro</scene> and a <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_211_in_trans_conformation/2'>trans-Pro</scene> are similarily unfavorable, since there is a steric clash between Cα,i with Cα,i+1 or Cδ,i+1, respectively. Conversely, the carbonyl O of residue i is in tight juxtaposition with Cδ,i+1 or Cα,i+1 (note that latter tight contact occurs in any trans peptide bond).

	The ω torsion angle can adopt a value close to 0° (cis-conformation), when a Pro residue is the following residue (Xaa-Pro peptide bond). In this situation a <scene name='82/824563/Pro_213_in_cis_conformation/1'>cis-Pro</scene> and a <scene name='82/824563/Pro_211_in_trans_conformation/1'>trans-Pro</scene> are similarily unfavorable, since there is a steric clash between Cα,i with Cα,i+1 or Cδ,i+1, respectively. Conversely, the carbonyl O of residue i is in tight juxtaposition with Cδ,i+1 or Cα,i+1 (note that latter tight contact occurs in any trans peptide bond).		The ω torsion angle can adopt a value close to 0° (cis-conformation), when a Pro residue is the following residue (Xaa-Pro peptide bond). In this situation a <scene name='82/824563/Pro_213_in_cis_conformation/1'>cis-Pro</scene> and a <scene name='82/824563/Pro_211_in_trans_conformation/1'>trans-Pro</scene> are similarily unfavorable, since there is a steric clash between Cα,i with Cα,i+1 or Cδ,i+1, respectively. Conversely, the carbonyl O of residue i is in tight juxtaposition with Cδ,i+1 or Cα,i+1 (note that latter tight contact occurs in any trans peptide bond).

Tilman Schirmer: /* Cis peptide bonds */

Tilman Schirmer — Thu, 19 Sep 2019 10:09:53 GMT

Cis peptide bonds

←Older revision		Revision as of 10:09, 19 September 2019
Line 33:		Line 33:

	The ω torsion angle can adopt a value close to 0° (cis-conformation), when a Pro residue is the following residue (Xaa-Pro peptide bond). In this situation a <scene name='82/824563/Pro_213_in_cis_conformation/1'>cis-Pro</scene> and a <scene name='82/824563/Pro_211_in_trans_conformation/1'>trans-Pro</scene> are similarily unfavorable, since there is a steric clash between Cα,i with Cα,i+1 or Cδ,i+1, respectively. Conversely, the carbonyl O of residue i is in tight juxtaposition with Cδ,i+1 or Cα,i+1 (note that latter tight contact occurs in any trans peptide bond).		The ω torsion angle can adopt a value close to 0° (cis-conformation), when a Pro residue is the following residue (Xaa-Pro peptide bond). In this situation a <scene name='82/824563/Pro_213_in_cis_conformation/1'>cis-Pro</scene> and a <scene name='82/824563/Pro_211_in_trans_conformation/1'>trans-Pro</scene> are similarily unfavorable, since there is a steric clash between Cα,i with Cα,i+1 or Cδ,i+1, respectively. Conversely, the carbonyl O of residue i is in tight juxtaposition with Cδ,i+1 or Cα,i+1 (note that latter tight contact occurs in any trans peptide bond).
-

	==== Torsion angle φ restricted for Pro ====		==== Torsion angle φ restricted for Pro ====

Tilman Schirmer at 08:44, 19 September 2019

Tilman Schirmer — Thu, 19 Sep 2019 08:44:54 GMT

←Older revision		Revision as of 08:44, 19 September 2019
Line 31:		Line 31:

	The ω torsion angle can adopt a value close to 0° (cis-conformation), when a Pro residue is the following residue (Xaa-Pro peptide bond). In this situation a <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_213_in_cis_conformation/6'>cis-Pro</scene> and a <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_211_in_trans_conformation/2'>trans-Pro</scene> are similarily unfavorable, since there is a steric clash between Cα,i with Cα,i+1 or Cδ,i+1, respectively. Conversely, the carbonyl O of residue i is in tight juxtaposition with Cδ,i+1 or Cα,i+1 (note that latter tight contact occurs in any trans peptide bond).		The ω torsion angle can adopt a value close to 0° (cis-conformation), when a Pro residue is the following residue (Xaa-Pro peptide bond). In this situation a <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_213_in_cis_conformation/6'>cis-Pro</scene> and a <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_211_in_trans_conformation/2'>trans-Pro</scene> are similarily unfavorable, since there is a steric clash between Cα,i with Cα,i+1 or Cδ,i+1, respectively. Conversely, the carbonyl O of residue i is in tight juxtaposition with Cδ,i+1 or Cα,i+1 (note that latter tight contact occurs in any trans peptide bond).
		+
		+	The ω torsion angle can adopt a value close to 0° (cis-conformation), when a Pro residue is the following residue (Xaa-Pro peptide bond). In this situation a <scene name='82/824563/Pro_213_in_cis_conformation/1'>cis-Pro</scene> and a <scene name='82/824563/Pro_211_in_trans_conformation/1'>trans-Pro</scene> are similarily unfavorable, since there is a steric clash between Cα,i with Cα,i+1 or Cδ,i+1, respectively. Conversely, the carbonyl O of residue i is in tight juxtaposition with Cδ,i+1 or Cα,i+1 (note that latter tight contact occurs in any trans peptide bond).
		+

	==== Torsion angle φ restricted for Pro ====		==== Torsion angle φ restricted for Pro ====

Tilman Schirmer: /* Cis peptide bonds */

Tilman Schirmer — Thu, 19 Sep 2019 08:30:05 GMT

Cis peptide bonds

←Older revision		Revision as of 08:30, 19 September 2019
Line 26:		Line 26:
	<scene name='38/387166/Pro_213_in_trans_conformation/2'>trans-Pro</scene>		<scene name='38/387166/Pro_213_in_trans_conformation/2'>trans-Pro</scene>

-	<scene name='38/387166/Pro_211_in_trans_conformation/4'>TextToBeDisplayed</scene	+	<scene name='38/387166/Pro_211_in_trans_conformation/4'>TextToBeDisplayed</scene>

Tilman Schirmer: /* Cis peptide bonds */

Tilman Schirmer — Thu, 19 Sep 2019 08:29:18 GMT

Cis peptide bonds

←Older revision		Revision as of 08:29, 19 September 2019
Line 25:		Line 25:

	<scene name='38/387166/Pro_213_in_trans_conformation/2'>trans-Pro</scene>		<scene name='38/387166/Pro_213_in_trans_conformation/2'>trans-Pro</scene>
		+
		+	<scene name='38/387166/Pro_211_in_trans_conformation/4'>TextToBeDisplayed</scene

Tilman Schirmer: /* Cis peptide bonds */

Tilman Schirmer — Thu, 19 Sep 2019 08:19:45 GMT

Cis peptide bonds

←Older revision		Revision as of 08:19, 19 September 2019
Line 23:		Line 23:

	<scene name='38/387166/Pro_213_in_cis_conformation/6'>cis-Pro</scene>		<scene name='38/387166/Pro_213_in_cis_conformation/6'>cis-Pro</scene>
		+
		+	<scene name='38/387166/Pro_213_in_trans_conformation/2'>trans-Pro</scene>

Tilman Schirmer: /* Cis peptide bonds */

Tilman Schirmer — Thu, 19 Sep 2019 08:15:25 GMT

Cis peptide bonds

←Older revision		Revision as of 08:15, 19 September 2019
Line 20:		Line 20:
	==== Cis peptide bonds ====		==== Cis peptide bonds ====

-	<scene name='User:Tilman_Schirmer/Sandbox_99/Pro_213_in_cis_conformation/6'>cis-Pro</scene>

-	<scene name='User:Tilman_Schirmer/Sandbox_99/38/387166/Pro_213_in_cis_conformation/6'>cis-Pro</scene>

-	<scene name='38/387166/Pro_213_in_cis_conformation/6'>~~TextToBeDisplayed~~</scene>	+	<scene name='38/387166/Pro_213_in_cis_conformation/6'>cis-Pro</scene>

Tilman Schirmer: /* Cis peptide bonds */

Tilman Schirmer — Thu, 19 Sep 2019 07:58:50 GMT

Cis peptide bonds

←Older revision		Revision as of 07:58, 19 September 2019
Line 23:		Line 23:

	<scene name='User:Tilman_Schirmer/Sandbox_99/38/387166/Pro_213_in_cis_conformation/6'>cis-Pro</scene>		<scene name='User:Tilman_Schirmer/Sandbox_99/38/387166/Pro_213_in_cis_conformation/6'>cis-Pro</scene>
		+
		+	<scene name='38/387166/Pro_213_in_cis_conformation/6'>TextToBeDisplayed</scene>
		+
		+

	The ω torsion angle can adopt a value close to 0° (cis-conformation), when a Pro residue is the following residue (Xaa-Pro peptide bond). In this situation a <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_213_in_cis_conformation/6'>cis-Pro</scene> and a <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_211_in_trans_conformation/2'>trans-Pro</scene> are similarily unfavorable, since there is a steric clash between Cα,i with Cα,i+1 or Cδ,i+1, respectively. Conversely, the carbonyl O of residue i is in tight juxtaposition with Cδ,i+1 or Cα,i+1 (note that latter tight contact occurs in any trans peptide bond).		The ω torsion angle can adopt a value close to 0° (cis-conformation), when a Pro residue is the following residue (Xaa-Pro peptide bond). In this situation a <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_213_in_cis_conformation/6'>cis-Pro</scene> and a <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_211_in_trans_conformation/2'>trans-Pro</scene> are similarily unfavorable, since there is a steric clash between Cα,i with Cα,i+1 or Cδ,i+1, respectively. Conversely, the carbonyl O of residue i is in tight juxtaposition with Cδ,i+1 or Cα,i+1 (note that latter tight contact occurs in any trans peptide bond).

Tilman Schirmer: /* Cis peptide bonds */

Tilman Schirmer — Thu, 19 Sep 2019 07:55:56 GMT

Cis peptide bonds

←Older revision		Revision as of 07:55, 19 September 2019
Line 22:		Line 22:
	<scene name='User:Tilman_Schirmer/Sandbox_99/Pro_213_in_cis_conformation/6'>cis-Pro</scene>		<scene name='User:Tilman_Schirmer/Sandbox_99/Pro_213_in_cis_conformation/6'>cis-Pro</scene>

-	<scene name='User:Tilman_Schirmer/Sandbox_99/38/387166/~~Pro_213_in_cis_conformation/6'>~~Pro_213_in_cis_conformation/6'>cis-Pro</scene>	+	<scene name='User:Tilman_Schirmer/Sandbox_99/38/387166/Pro_213_in_cis_conformation/6'>cis-Pro</scene>

	The ω torsion angle can adopt a value close to 0° (cis-conformation), when a Pro residue is the following residue (Xaa-Pro peptide bond). In this situation a <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_213_in_cis_conformation/6'>cis-Pro</scene> and a <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_211_in_trans_conformation/2'>trans-Pro</scene> are similarily unfavorable, since there is a steric clash between Cα,i with Cα,i+1 or Cδ,i+1, respectively. Conversely, the carbonyl O of residue i is in tight juxtaposition with Cδ,i+1 or Cα,i+1 (note that latter tight contact occurs in any trans peptide bond).		The ω torsion angle can adopt a value close to 0° (cis-conformation), when a Pro residue is the following residue (Xaa-Pro peptide bond). In this situation a <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_213_in_cis_conformation/6'>cis-Pro</scene> and a <scene name='User:Tilman_Schirmer/Sandbox_99/Pro_211_in_trans_conformation/2'>trans-Pro</scene> are similarily unfavorable, since there is a steric clash between Cα,i with Cα,i+1 or Cδ,i+1, respectively. Conversely, the carbonyl O of residue i is in tight juxtaposition with Cδ,i+1 or Cα,i+1 (note that latter tight contact occurs in any trans peptide bond).