Vm24 Scorpion Toxin - Revision history

Michal Harel at 10:42, 26 January 2022

Michal Harel — Wed, 26 Jan 2022 10:42:58 GMT

←Older revision		Revision as of 10:42, 26 January 2022
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	==Introduction==		==Introduction==
-	Vm24 synthetic scorpion toxin is a peptide toxin isolated from ''Vaejovis mexicanus smithi'' scorpion venom. It is a potent inhibitor of Kv1.3 potassium channels of human T lymphocytes. Its high affinity and specificity for human lymphocytes makes it a candidate for the treatment of several autoimmune disorders.	+	'''Vm24''' synthetic scorpion toxin is a peptide toxin isolated from ''Vaejovis mexicanus smithi'' scorpion venom. It is a potent inhibitor of Kv1.3 potassium channels of human T lymphocytes. Its high affinity and specificity for human lymphocytes makes it a candidate for the treatment of several autoimmune disorders.
	[[Image:V24 APBS.png\|300px\|thumb\|upright\|left\|alt=alt\|APBS Electrostatic Surface of Vm24, [[2k9o]]]]		[[Image:V24 APBS.png\|300px\|thumb\|upright\|left\|alt=alt\|APBS Electrostatic Surface of Vm24, [[2k9o]]]]
	<Structure load='2k9o' size='350' frame='true' align='right' caption='Vm24 Scorpion Toxin [[2k9o]]' scene='Insert optional scene name here' />		<Structure load='2k9o' size='350' frame='true' align='right' caption='Vm24 Scorpion Toxin [[2k9o]]' scene='Insert optional scene name here' />

Zachary Babbitz at 17:52, 29 April 2020

Zachary Babbitz — Wed, 29 Apr 2020 17:52:14 GMT

←Older revision		Revision as of 17:52, 29 April 2020
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	==References==		==References==
	Gurrola, G. B., Hernández-López, R. A., Rodríguez de la Vega, R. C., Varga, Z., Batista, C. V. F., Salas-Castillo, S. P., Panyi, G., del Río-Portilla, F., & Possani, L. D. (2012). Structure, Function, and Chemical Synthesis of Vaejovis mexicanus Peptide 24: A Novel Potent Blocker of Kv1.3 Potassium Channels of Human T Lymphocytes. Biochemistry, 51(19), 4049–4061. https://doi.org/10.1021/bi300060n<ref>https://pubmed-ncbi-nlm-nih-gov.ezproxy.uvm.edu/22540187/?from_single_result=Structure%2C+function%2C+and+chemical+synthesis+of+Vaejovis+mexicanus+peptide+24%3A+a+novel+potent+blocker+of+Kv1.3+potassium+channels+of+human+T+lymphocytes.&expanded_search_query=Structure%2C+function%2C+and+chemical+synthesis+of+Vaejovis+mexicanus+peptide+24%3A+a+novel+potent+blocker+of+Kv1.3+potassium+channels+of+human+T+lymphocytes.</ref>		Gurrola, G. B., Hernández-López, R. A., Rodríguez de la Vega, R. C., Varga, Z., Batista, C. V. F., Salas-Castillo, S. P., Panyi, G., del Río-Portilla, F., & Possani, L. D. (2012). Structure, Function, and Chemical Synthesis of Vaejovis mexicanus Peptide 24: A Novel Potent Blocker of Kv1.3 Potassium Channels of Human T Lymphocytes. Biochemistry, 51(19), 4049–4061. https://doi.org/10.1021/bi300060n<ref>https://pubmed-ncbi-nlm-nih-gov.ezproxy.uvm.edu/22540187/?from_single_result=Structure%2C+function%2C+and+chemical+synthesis+of+Vaejovis+mexicanus+peptide+24%3A+a+novel+potent+blocker+of+Kv1.3+potassium+channels+of+human+T+lymphocytes.&expanded_search_query=Structure%2C+function%2C+and+chemical+synthesis+of+Vaejovis+mexicanus+peptide+24%3A+a+novel+potent+blocker+of+Kv1.3+potassium+channels+of+human+T+lymphocytes.</ref>
		+
	(2018). UniProt: a worldwide hub of protein knowledge. Nucleic Acids Research, 47(D1), D506–D515. https://doi.org/10.1093/nar/gky1049<ref>https://www.uniprot.org/taxonomy/1562928</ref>		(2018). UniProt: a worldwide hub of protein knowledge. Nucleic Acids Research, 47(D1), D506–D515. https://doi.org/10.1093/nar/gky1049<ref>https://www.uniprot.org/taxonomy/1562928</ref>
	<ref>https://www.uniprot.org/uniprot/?query=family%3A%22short+scorpion+toxin+superfamily%22&sort=score</ref><ref>https://www.uniprot.org/uniprot/?query=family:%22short+scorpion+toxin+superfamily.+Potassium+channel+inhibitor+family.+Alpha-KTx+23+subfamily%22&sort=score</ref>		<ref>https://www.uniprot.org/uniprot/?query=family%3A%22short+scorpion+toxin+superfamily%22&sort=score</ref><ref>https://www.uniprot.org/uniprot/?query=family:%22short+scorpion+toxin+superfamily.+Potassium+channel+inhibitor+family.+Alpha-KTx+23+subfamily%22&sort=score</ref>
		+
	Lomize, M. A., Pogozheva, I. D., Joo, H., Mosberg, H. I., & Lomize, A. L. (2011). OPM database and PPM web server: resources for positioning of proteins in membranes. Nucleic Acids Research, 40(D1), D370–D376. https://doi.org/10.1093/nar/gkr703<ref>https://opm.phar.umich.edu/proteins/994</ref>		Lomize, M. A., Pogozheva, I. D., Joo, H., Mosberg, H. I., & Lomize, A. L. (2011). OPM database and PPM web server: resources for positioning of proteins in membranes. Nucleic Acids Research, 40(D1), D370–D376. https://doi.org/10.1093/nar/gkr703<ref>https://opm.phar.umich.edu/proteins/994</ref>
		+
	Jensen, B. S., Odum, N., Jorgensen, N. K., Christophersen, P., & Olesen, S.-P. (1999). Inhibition of T cell proliferation by selective block of Ca2+-activated K+ channels. Proceedings of the National Academy of Sciences, 96(19), 10917–10921. https://doi.org/10.1073/pnas.96.19.10917<ref>https://www.pnas.org/content/96/19/10917</ref>		Jensen, B. S., Odum, N., Jorgensen, N. K., Christophersen, P., & Olesen, S.-P. (1999). Inhibition of T cell proliferation by selective block of Ca2+-activated K+ channels. Proceedings of the National Academy of Sciences, 96(19), 10917–10921. https://doi.org/10.1073/pnas.96.19.10917<ref>https://www.pnas.org/content/96/19/10917</ref>

Zachary Babbitz at 17:50, 29 April 2020

Zachary Babbitz — Wed, 29 Apr 2020 17:50:53 GMT

←Older revision		Revision as of 17:50, 29 April 2020
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	Proliferation of T- cells can be blocked by blocking membrane K+ channels[https://www.pnas.org/content/96/19/10917]. Auto-immune diseases such as multiple sclerosis and type I diabetes mellitus involve autoreactive T-cell clones who's proliferation requires Kv1.3 channel activation. Other members of alpha-KTx peptides are blockers of Kv1.3 channels, but they also block other K+ channels. Most K+ channel blockers are highly toxic for this reason. Mice were tested with 50-200ug of Vm24 per mouse (20g body weight) and showed no symptoms of intoxication. Vm24 thus has high potential for use in the treatment of autoimmune diseases.		Proliferation of T- cells can be blocked by blocking membrane K+ channels[https://www.pnas.org/content/96/19/10917]. Auto-immune diseases such as multiple sclerosis and type I diabetes mellitus involve autoreactive T-cell clones who's proliferation requires Kv1.3 channel activation. Other members of alpha-KTx peptides are blockers of Kv1.3 channels, but they also block other K+ channels. Most K+ channel blockers are highly toxic for this reason. Mice were tested with 50-200ug of Vm24 per mouse (20g body weight) and showed no symptoms of intoxication. Vm24 thus has high potential for use in the treatment of autoimmune diseases.
	==References==		==References==
-	<ref>https://pubmed-ncbi-nlm-nih-gov.ezproxy.uvm.edu/22540187/?from_single_result=Structure%2C+function%2C+and+chemical+synthesis+of+Vaejovis+mexicanus+peptide+24%3A+a+novel+potent+blocker+of+Kv1.3+potassium+channels+of+human+T+lymphocytes.&expanded_search_query=Structure%2C+function%2C+and+chemical+synthesis+of+Vaejovis+mexicanus+peptide+24%3A+a+novel+potent+blocker+of+Kv1.3+potassium+channels+of+human+T+lymphocytes.</ref>	+	Gurrola, G. B., Hernández-López, R. A., Rodríguez de la Vega, R. C., Varga, Z., Batista, C. V. F., Salas-Castillo, S. P., Panyi, G., del Río-Portilla, F., & Possani, L. D. (2012). Structure, Function, and Chemical Synthesis of Vaejovis mexicanus Peptide 24: A Novel Potent Blocker of Kv1.3 Potassium Channels of Human T Lymphocytes. Biochemistry, 51(19), 4049–4061. https://doi.org/10.1021/bi300060n<ref>https://pubmed-ncbi-nlm-nih-gov.ezproxy.uvm.edu/22540187/?from_single_result=Structure%2C+function%2C+and+chemical+synthesis+of+Vaejovis+mexicanus+peptide+24%3A+a+novel+potent+blocker+of+Kv1.3+potassium+channels+of+human+T+lymphocytes.&expanded_search_query=Structure%2C+function%2C+and+chemical+synthesis+of+Vaejovis+mexicanus+peptide+24%3A+a+novel+potent+blocker+of+Kv1.3+potassium+channels+of+human+T+lymphocytes.</ref>
-	<ref>https://www.uniprot.org/taxonomy/1562928</ref>	+	(2018). UniProt: a worldwide hub of protein knowledge. Nucleic Acids Research, 47(D1), D506–D515. https://doi.org/10.1093/nar/gky1049<ref>https://www.uniprot.org/taxonomy/1562928</ref>
-	<ref>https://www.uniprot.org/uniprot/?query=family%3A%22short+scorpion+toxin+superfamily%22&sort=score</ref>	+	<ref>https://www.uniprot.org/uniprot/?query=family%3A%22short+scorpion+toxin+superfamily%22&sort=score</ref><ref>https://www.uniprot.org/uniprot/?query=family:%22short+scorpion+toxin+superfamily.+Potassium+channel+inhibitor+family.+Alpha-KTx+23+subfamily%22&sort=score</ref>
		+	Lomize, M. A., Pogozheva, I. D., Joo, H., Mosberg, H. I., & Lomize, A. L. (2011). OPM database and PPM web server: resources for positioning of proteins in membranes. Nucleic Acids Research, 40(D1), D370–D376. https://doi.org/10.1093/nar/gkr703<ref>https://opm.phar.umich.edu/proteins/994</ref>
		+	Jensen, B. S., Odum, N., Jorgensen, N. K., Christophersen, P., & Olesen, S.-P. (1999). Inhibition of T cell proliferation by selective block of Ca2+-activated K+ channels. Proceedings of the National Academy of Sciences, 96(19), 10917–10921. https://doi.org/10.1073/pnas.96.19.10917<ref>https://www.pnas.org/content/96/19/10917</ref>

Zachary Babbitz at 17:38, 29 April 2020

Zachary Babbitz — Wed, 29 Apr 2020 17:38:12 GMT

←Older revision		Revision as of 17:38, 29 April 2020
Line 19:		Line 19:
	==Medical Relevance==		==Medical Relevance==
	Proliferation of T- cells can be blocked by blocking membrane K+ channels[https://www.pnas.org/content/96/19/10917]. Auto-immune diseases such as multiple sclerosis and type I diabetes mellitus involve autoreactive T-cell clones who's proliferation requires Kv1.3 channel activation. Other members of alpha-KTx peptides are blockers of Kv1.3 channels, but they also block other K+ channels. Most K+ channel blockers are highly toxic for this reason. Mice were tested with 50-200ug of Vm24 per mouse (20g body weight) and showed no symptoms of intoxication. Vm24 thus has high potential for use in the treatment of autoimmune diseases.		Proliferation of T- cells can be blocked by blocking membrane K+ channels[https://www.pnas.org/content/96/19/10917]. Auto-immune diseases such as multiple sclerosis and type I diabetes mellitus involve autoreactive T-cell clones who's proliferation requires Kv1.3 channel activation. Other members of alpha-KTx peptides are blockers of Kv1.3 channels, but they also block other K+ channels. Most K+ channel blockers are highly toxic for this reason. Mice were tested with 50-200ug of Vm24 per mouse (20g body weight) and showed no symptoms of intoxication. Vm24 thus has high potential for use in the treatment of autoimmune diseases.
		+	==References==
		+	<ref>https://pubmed-ncbi-nlm-nih-gov.ezproxy.uvm.edu/22540187/?from_single_result=Structure%2C+function%2C+and+chemical+synthesis+of+Vaejovis+mexicanus+peptide+24%3A+a+novel+potent+blocker+of+Kv1.3+potassium+channels+of+human+T+lymphocytes.&expanded_search_query=Structure%2C+function%2C+and+chemical+synthesis+of+Vaejovis+mexicanus+peptide+24%3A+a+novel+potent+blocker+of+Kv1.3+potassium+channels+of+human+T+lymphocytes.</ref>
		+	<ref>https://www.uniprot.org/taxonomy/1562928</ref>
		+	<ref>https://www.uniprot.org/uniprot/?query=family%3A%22short+scorpion+toxin+superfamily%22&sort=score</ref>

Zachary Babbitz at 17:32, 29 April 2020

Zachary Babbitz — Wed, 29 Apr 2020 17:32:20 GMT

←Older revision		Revision as of 17:32, 29 April 2020
Line 18:		Line 18:
	Vm24 has about 1500 fold selectivity for Kv1.3 over the 10 other ion channels tested.		Vm24 has about 1500 fold selectivity for Kv1.3 over the 10 other ion channels tested.
	==Medical Relevance==		==Medical Relevance==
-	Proliferation of T- cells can be blocked by blocking membrane K+ channels. Auto-immune diseases such as multiple sclerosis and type I diabetes mellitus involve autoreactive T-cell clones who's proliferation requires Kv1.3 channel activation. Other members of alpha-KTx peptides are blockers of Kv1.3 channels, but they also block other K+ channels. Most K+ channel blockers are highly toxic for this reason. Mice were tested with 50-200ug of Vm24 per mouse (20g body weight) and showed no symptoms of intoxication. Vm24 thus has high potential for use in the treatment of autoimmune diseases.	+	Proliferation of T- cells can be blocked by blocking membrane K+ channels[https://www.pnas.org/content/96/19/10917]. Auto-immune diseases such as multiple sclerosis and type I diabetes mellitus involve autoreactive T-cell clones who's proliferation requires Kv1.3 channel activation. Other members of alpha-KTx peptides are blockers of Kv1.3 channels, but they also block other K+ channels. Most K+ channel blockers are highly toxic for this reason. Mice were tested with 50-200ug of Vm24 per mouse (20g body weight) and showed no symptoms of intoxication. Vm24 thus has high potential for use in the treatment of autoimmune diseases.

Zachary Babbitz at 17:28, 29 April 2020

Zachary Babbitz — Wed, 29 Apr 2020 17:28:16 GMT

←Older revision		Revision as of 17:28, 29 April 2020
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	==Structural Functionality==		==Structural Functionality==
	[[Image:channel_toxin.png\|600px\|thumb\|upright\|left\|alt=alt\|Vm24 (pink) [[2k9o]] attacking Kv1.2 (green) [[3lut]]. Red surface is extracellular membrane. Blue surface is intracellular membrane. His451 shown in red. Lys25 shown in yellow. Tyr35 shown in cyan.]]		[[Image:channel_toxin.png\|600px\|thumb\|upright\|left\|alt=alt\|Vm24 (pink) [[2k9o]] attacking Kv1.2 (green) [[3lut]]. Red surface is extracellular membrane. Blue surface is intracellular membrane. His451 shown in red. Lys25 shown in yellow. Tyr35 shown in cyan.]]
-	Vm24 was docked on Kv1.2 (since there is no available Kv1.3 model). Lys25 contacts the channel’s selectivity filter and Tyr35 makes many contacts with the bottom of the K+ channel vestibule. The non-conserved pre-alpha helix residues interact with the non-conserved turrets of K+ channels. The most conserved Vm24 β-hairpin contacts the conserved vestibule region of the channel. Thus there are two “pharmacophores," one for the blockade and one for specificity.	+	Vm24 was docked on Kv1.2[https://opm.phar.umich.edu/proteins/994] since there is no available Kv1.3 model. <scene name='84/842913/Resi_25/1'>Lys25</scene> contacts the channel’s selectivity filter and <scene name='84/842913/Tyr35/2'>Tyr35</scene> makes many contacts with the bottom of the K+ channel vestibule. The non-conserved pre-alpha helix residues interact with the non-conserved turrets of K+ channels. The most conserved Vm24 β-hairpin contacts the conserved vestibule region of the channel. Thus there are two “pharmacophores," one for the blockade and one for specificity.
	Vm24 has about 1500 fold selectivity for Kv1.3 over the 10 other ion channels tested.		Vm24 has about 1500 fold selectivity for Kv1.3 over the 10 other ion channels tested.
	==Medical Relevance==		==Medical Relevance==
	Proliferation of T- cells can be blocked by blocking membrane K+ channels. Auto-immune diseases such as multiple sclerosis and type I diabetes mellitus involve autoreactive T-cell clones who's proliferation requires Kv1.3 channel activation. Other members of alpha-KTx peptides are blockers of Kv1.3 channels, but they also block other K+ channels. Most K+ channel blockers are highly toxic for this reason. Mice were tested with 50-200ug of Vm24 per mouse (20g body weight) and showed no symptoms of intoxication. Vm24 thus has high potential for use in the treatment of autoimmune diseases.		Proliferation of T- cells can be blocked by blocking membrane K+ channels. Auto-immune diseases such as multiple sclerosis and type I diabetes mellitus involve autoreactive T-cell clones who's proliferation requires Kv1.3 channel activation. Other members of alpha-KTx peptides are blockers of Kv1.3 channels, but they also block other K+ channels. Most K+ channel blockers are highly toxic for this reason. Mice were tested with 50-200ug of Vm24 per mouse (20g body weight) and showed no symptoms of intoxication. Vm24 thus has high potential for use in the treatment of autoimmune diseases.

Zachary Babbitz at 17:13, 29 April 2020

Zachary Babbitz — Wed, 29 Apr 2020 17:13:33 GMT

←Older revision		Revision as of 17:13, 29 April 2020
Line 1:		Line 1:
	==Introduction==		==Introduction==
-	Vm24 synthetic scorpion toxin is a peptide toxin isolated from ''Vaejovis mexicanus smithi''~~[https://www.uniprot.org/taxonomy/1562928]~~ scorpion venom. It is a potent inhibitor of Kv1.3 potassium channels of human T lymphocytes. Its high affinity and specificity for human lymphocytes makes it a candidate for the treatment of several autoimmune disorders.	+	Vm24 synthetic scorpion toxin is a peptide toxin isolated from ''Vaejovis mexicanus smithi'' scorpion venom. It is a potent inhibitor of Kv1.3 potassium channels of human T lymphocytes. Its high affinity and specificity for human lymphocytes makes it a candidate for the treatment of several autoimmune disorders.
	[[Image:V24 APBS.png\|300px\|thumb\|upright\|left\|alt=alt\|APBS Electrostatic Surface of Vm24, [[2k9o]]]]		[[Image:V24 APBS.png\|300px\|thumb\|upright\|left\|alt=alt\|APBS Electrostatic Surface of Vm24, [[2k9o]]]]
	<Structure load='2k9o' size='350' frame='true' align='right' caption='Vm24 Scorpion Toxin [[2k9o]]' scene='Insert optional scene name here' />		<Structure load='2k9o' size='350' frame='true' align='right' caption='Vm24 Scorpion Toxin [[2k9o]]' scene='Insert optional scene name here' />
	==Protein Source==		==Protein Source==
-	Gurolla G.B et al [https://pubmed-ncbi-nlm-nih-gov.ezproxy.uvm.edu/22540187/?from_single_result=Structure%2C+function%2C+and+chemical+synthesis+of+Vaejovis+mexicanus+peptide+24%3A+a+novel+potent+blocker+of+Kv1.3+potassium+channels+of+human+T+lymphocytes.&expanded_search_query=Structure%2C+function%2C+and+chemical+synthesis+of+Vaejovis+mexicanus+peptide+24%3A+a+novel+potent+blocker+of+Kv1.3+potassium+channels+of+human+T+lymphocytes.] isolated the peptide components of ''Vaejovis mexicanus smithi'' venom using high-performance liquid chromatography. Over 200 components were identified. The structure of Vm24 was determined by solution NMR spectroscopy, and it was sequenced via trypsin digestion. The a synthetic Vm24 gene was created and artificially translated to produce the synthetic Vm24 toxin displayed. The synthetic peptide has the same mass, elution time, and physiological effects as the natural peptide.	+	Gurolla G.B et al [https://pubmed-ncbi-nlm-nih-gov.ezproxy.uvm.edu/22540187/?from_single_result=Structure%2C+function%2C+and+chemical+synthesis+of+Vaejovis+mexicanus+peptide+24%3A+a+novel+potent+blocker+of+Kv1.3+potassium+channels+of+human+T+lymphocytes.&expanded_search_query=Structure%2C+function%2C+and+chemical+synthesis+of+Vaejovis+mexicanus+peptide+24%3A+a+novel+potent+blocker+of+Kv1.3+potassium+channels+of+human+T+lymphocytes.] isolated the peptide components of ''Vaejovis mexicanus smithi''[https://www.uniprot.org/taxonomy/1562928] venom using high-performance liquid chromatography. Over 200 components were identified. The structure of Vm24 was determined by solution NMR spectroscopy, and it was sequenced via trypsin digestion. The a synthetic Vm24 gene was created and artificially translated to produce the synthetic Vm24 toxin displayed. The synthetic peptide has the same mass, elution time, and physiological effects as the natural peptide.
	==General Structure==		==General Structure==
	Vm24 is a single chain protein consisting of 36 amino acids. It has a molecular weight of 3,873 daltons. It consists of a three strand (S1,S2,S3) anti-parallel <scene name='84/842913/Labeled_beta_strands/1'>beta sheet</scene> and one single turn <scene name='84/842913/Aplha/1'>alpha helix</scene> with <scene name='84/842913/All_disulfides/1'>four disulfide bonds</scene> holding the chain together.		Vm24 is a single chain protein consisting of 36 amino acids. It has a molecular weight of 3,873 daltons. It consists of a three strand (S1,S2,S3) anti-parallel <scene name='84/842913/Labeled_beta_strands/1'>beta sheet</scene> and one single turn <scene name='84/842913/Aplha/1'>alpha helix</scene> with <scene name='84/842913/All_disulfides/1'>four disulfide bonds</scene> holding the chain together.

Zachary Babbitz at 20:29, 28 April 2020

Zachary Babbitz — Tue, 28 Apr 2020 20:29:44 GMT

←Older revision		Revision as of 20:29, 28 April 2020
Line 17:		Line 17:
	Vm24 was docked on Kv1.2 (since there is no available Kv1.3 model). Lys25 contacts the channel’s selectivity filter and Tyr35 makes many contacts with the bottom of the K+ channel vestibule. The non-conserved pre-alpha helix residues interact with the non-conserved turrets of K+ channels. The most conserved Vm24 β-hairpin contacts the conserved vestibule region of the channel. Thus there are two “pharmacophores," one for the blockade and one for specificity.		Vm24 was docked on Kv1.2 (since there is no available Kv1.3 model). Lys25 contacts the channel’s selectivity filter and Tyr35 makes many contacts with the bottom of the K+ channel vestibule. The non-conserved pre-alpha helix residues interact with the non-conserved turrets of K+ channels. The most conserved Vm24 β-hairpin contacts the conserved vestibule region of the channel. Thus there are two “pharmacophores," one for the blockade and one for specificity.
	Vm24 has about 1500 fold selectivity for Kv1.3 over the 10 other ion channels tested.		Vm24 has about 1500 fold selectivity for Kv1.3 over the 10 other ion channels tested.
		+	==Medical Relevance==
		+	Proliferation of T- cells can be blocked by blocking membrane K+ channels. Auto-immune diseases such as multiple sclerosis and type I diabetes mellitus involve autoreactive T-cell clones who's proliferation requires Kv1.3 channel activation. Other members of alpha-KTx peptides are blockers of Kv1.3 channels, but they also block other K+ channels. Most K+ channel blockers are highly toxic for this reason. Mice were tested with 50-200ug of Vm24 per mouse (20g body weight) and showed no symptoms of intoxication. Vm24 thus has high potential for use in the treatment of autoimmune diseases.

Zachary Babbitz at 20:25, 28 April 2020

Zachary Babbitz — Tue, 28 Apr 2020 20:25:09 GMT

←Older revision		Revision as of 20:25, 28 April 2020
Line 15:		Line 15:
	==Structural Functionality==		==Structural Functionality==
	[[Image:channel_toxin.png\|600px\|thumb\|upright\|left\|alt=alt\|Vm24 (pink) [[2k9o]] attacking Kv1.2 (green) [[3lut]]. Red surface is extracellular membrane. Blue surface is intracellular membrane. His451 shown in red. Lys25 shown in yellow. Tyr35 shown in cyan.]]		[[Image:channel_toxin.png\|600px\|thumb\|upright\|left\|alt=alt\|Vm24 (pink) [[2k9o]] attacking Kv1.2 (green) [[3lut]]. Red surface is extracellular membrane. Blue surface is intracellular membrane. His451 shown in red. Lys25 shown in yellow. Tyr35 shown in cyan.]]
		+	Vm24 was docked on Kv1.2 (since there is no available Kv1.3 model). Lys25 contacts the channel’s selectivity filter and Tyr35 makes many contacts with the bottom of the K+ channel vestibule. The non-conserved pre-alpha helix residues interact with the non-conserved turrets of K+ channels. The most conserved Vm24 β-hairpin contacts the conserved vestibule region of the channel. Thus there are two “pharmacophores," one for the blockade and one for specificity.
		+	Vm24 has about 1500 fold selectivity for Kv1.3 over the 10 other ion channels tested.

Zachary Babbitz at 20:11, 28 April 2020

Zachary Babbitz — Tue, 28 Apr 2020 20:11:58 GMT

←Older revision		Revision as of 20:11, 28 April 2020
Line 14:		Line 14:
	Vm24 is a member of the short scorpion toxin superfamily[https://www.uniprot.org/uniprot/?query=family%3A%22short+scorpion+toxin+superfamily%22&sort=score], potassium channel inhibitor family[https://www.uniprot.org/uniprot/?query=family:%22short+scorpion+toxin+superfamily.+Potassium+channel+inhibitor+family%22&sort=score]. Vm24 appears as a sister clade to the α-KTx subfamilies 6 and 7, and is thus proposed as a novel new subfamily α-KTx 23.1[https://www.uniprot.org/uniprot/?query=family:%22short+scorpion+toxin+superfamily.+Potassium+channel+inhibitor+family.+Alpha-KTx+23+subfamily%22&sort=score]. The alpha-KTx 23 subfamily contains proteins with the CSalpha/beta fold, which comprises one or two short alpha helices connected to anti-parallel beta-sheets stabilized by three or four disulfide bonds.		Vm24 is a member of the short scorpion toxin superfamily[https://www.uniprot.org/uniprot/?query=family%3A%22short+scorpion+toxin+superfamily%22&sort=score], potassium channel inhibitor family[https://www.uniprot.org/uniprot/?query=family:%22short+scorpion+toxin+superfamily.+Potassium+channel+inhibitor+family%22&sort=score]. Vm24 appears as a sister clade to the α-KTx subfamilies 6 and 7, and is thus proposed as a novel new subfamily α-KTx 23.1[https://www.uniprot.org/uniprot/?query=family:%22short+scorpion+toxin+superfamily.+Potassium+channel+inhibitor+family.+Alpha-KTx+23+subfamily%22&sort=score]. The alpha-KTx 23 subfamily contains proteins with the CSalpha/beta fold, which comprises one or two short alpha helices connected to anti-parallel beta-sheets stabilized by three or four disulfide bonds.
	==Structural Functionality==		==Structural Functionality==
-	[[Image:channel_toxin.png\|~~300px~~\|thumb\|upright\|left\|alt=alt\|Vm24 (pink) [[2k9o]] attacking Kv1.2 (green) [[3lut]]. Red surface is extracellular membrane. Blue surface is intracellular membrane. His451 shown in red. Lys25 shown in yellow. Tyr35 shown in cyan.]]	+	[[Image:channel_toxin.png\|600px\|thumb\|upright\|left\|alt=alt\|Vm24 (pink) [[2k9o]] attacking Kv1.2 (green) [[3lut]]. Red surface is extracellular membrane. Blue surface is intracellular membrane. His451 shown in red. Lys25 shown in yellow. Tyr35 shown in cyan.]]