Xylosidase - Revision history

Michal Harel at 09:00, 29 March 2020

Michal Harel — Sun, 29 Mar 2020 09:00:33 GMT

←Older revision		Revision as of 09:00, 29 March 2020
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	</StructureSection>		</StructureSection>

-	== 3D Structures of xylosidase ==
-
-	Updated on {{REVISIONDAY2}}-{{MONTHNAME\|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
-	{{#tree:id=OrganizedByTopic\|openlevels=0\|
-
-	*α-xylosidase
-
-	**[[5jou]] – BoXYL – ''Bacterioides ovatus'' <BR />
-	**[[5jov]] – BoXYL + piperazine derivative <BR />
-
-	*α-xylosidase family 31
-
-	**[[2xvg]], [[2xvk]] – CjXYL – ''Cellvibrio japonicus'' <BR />
-	**[[2xvl]] – CjXYL + xylobiose <BR />
-	**[[1xsi]], [[1xsj]], [[1we5]] – EcXYL – ''Escherichia coli''<br />
-	**[[1xsk]] – EcXYL + intermediate<br />
-	**[[6dru]] – XYL + xylopyranose - ''Aspergillus niger'' <BR />
-	**[[5hxm]] – XYL + panose - ''Listeria monocytogenes'' <BR />
-
-	*β-xylosidase
-
-	**[[1yrz]] – XYL – ''Bacillus halodurans'' <BR />
-	**[[1yif]] – XYL – ''Bacillus subtilis'' <BR />
-	**[[5zqj]] – BpXYL – ''Bacillus pumilus'' <BR />
-	**[[5zqx]] – BpXYL (mutant) + xylobiose <BR />
-	**[[5zqs]] – BpXYL (mutant) + xylobiose + xylopyranose <BR />
-	**[[4mlg]] – XYL – uncultured <BR />
-	**[[3c2u]] – XYL + propane derivative – ''Selenomonas ruminantium'' <BR />
-
-	*β-xylosidase family 3
-
-	**[[5a7m]] – HjXYL – ''Hypocrea jecorina'' <BR />
-	**[[5ae6]] – HjXYL + thioxylobiose <BR />
-
-	*β-xylosidase family 39
-
-	**[[1px8]], [[1uhv]] – TsXYL – ''Thermoanaerobacterium saccharolyticum'' <BR />
-	**[[4ekj]] – XYL – ''Caulobacter vibrioides''<BR />
-	**[[4m29]] – XYL – ''Caulobacter crscentus''<BR />
-	**[[2bs9]], [[1w91]], [[4rhh]] – BsXYL – ''Bacillus stearothermophilus'' <BR />
-	**[[2bfg]] – BsXYL + xylobiose <BR />
-
-	*β-xylosidase family 43
-
-	**[[1y7b]], [[1yi7]], [[3k1u]] – CaXYL – ''Clostridium acetobutylicum'' <BR />
-	**[[3qed]], [[3qee]] – CjXYL <BR />
-	**[[5z5d]] – GtXYL - ''Geobacillus thermoleovorans'' <BR />
-	**[[5z5f]] – GtXYL + arabinose <BR />
-	**[[5z5h]] – GtXYL + xylose <BR />
-	**[[5z5i]] – GtXYL + arabinose + xylopyranose <BR />
-	**[[2exh]] – BsXYL <BR />
-	**[[2exi]] – BsXYL (mutant) <BR />
-	**[[2exj]] – BsXYL + xylobiose <BR />
-	**[[2exk]] – BsXYL (mutant) + xylobiose <BR />
-	**[[3qef]] – CaXYL (mutant) + arabinofuranose <BR />
-	**[[6ife]] – BpXYL <BR />
-
-	*β-xylosidase family 52
-
-	**[[4c1o]] – BtXYL – ''Bacillus thermoglucosidasius'' <BR />
-	**[[4c1p]] – BtXYL + xylobiose <BR />
-
-	*β-xylosidase family 120
-
-	**[[3vst]] – TsXYL <BR />
-	**[[3vsv]] – TsXYL + xylose <BR />
-	**[[3vsu]] – TsXYL + xylobiose <BR />
-
-	*β-xylosidase/glucosidase
-
-	**[[6jbs]] – smLXYL - shiitake mushroom <BR />
-	**[[6kj0]] – smXYL (mutant) <BR />
-
-	*Exo-1,4-β-xylosidase
-
-	**[[6q7i]] – AnXLND - Aspergillus nidulans <BR />
-	**[[6q7j]] – AnXLND + xylobiose derivative <BR />
-
-	}}
	==References==		==References==
	<references />		<references />
	[[Category:Topic Page]]		[[Category:Topic Page]]

Michal Harel at 08:59, 29 March 2020

Michal Harel — Sun, 29 Mar 2020 08:59:36 GMT

←Older revision		Revision as of 08:59, 29 March 2020
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	== Structural highlights ==		== Structural highlights ==
	The <scene name='55/551220/Cv/5'>active site of α-xylosidase contains the xyloglucan and nucleophilic water</scene><ref>PMID:21426303</ref>. Water molecules are shown as red spheres. <scene name='55/551220/Cv/6'>Ni/Cl complex</scene>.		The <scene name='55/551220/Cv/5'>active site of α-xylosidase contains the xyloglucan and nucleophilic water</scene><ref>PMID:21426303</ref>. Water molecules are shown as red spheres. <scene name='55/551220/Cv/6'>Ni/Cl complex</scene>.
		+	== 3D Structures of xylosidase ==
		+	[[Xylosidase 3D structures]]
		+
	</StructureSection>		</StructureSection>

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	**[[2exk]] – BsXYL (mutant) + xylobiose <BR />		**[[2exk]] – BsXYL (mutant) + xylobiose <BR />
	**[[3qef]] – CaXYL (mutant) + arabinofuranose <BR />		**[[3qef]] – CaXYL (mutant) + arabinofuranose <BR />
		+	**[[6ife]] – BpXYL <BR />

	*β-xylosidase family 52		*β-xylosidase family 52
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	**[[3vsv]] – TsXYL + xylose <BR />		**[[3vsv]] – TsXYL + xylose <BR />
	**[[3vsu]] – TsXYL + xylobiose <BR />		**[[3vsu]] – TsXYL + xylobiose <BR />
		+
		+	*β-xylosidase/glucosidase
		+
		+	**[[6jbs]] – smLXYL - shiitake mushroom <BR />
		+	**[[6kj0]] – smXYL (mutant) <BR />
		+
		+	*Exo-1,4-β-xylosidase
		+
		+	**[[6q7i]] – AnXLND - Aspergillus nidulans <BR />
		+	**[[6q7j]] – AnXLND + xylobiose derivative <BR />
		+
	}}		}}
	==References==		==References==
	<references />		<references />
	[[Category:Topic Page]]		[[Category:Topic Page]]

Alexander Berchansky at 12:06, 22 October 2019

Alexander Berchansky — Tue, 22 Oct 2019 12:06:43 GMT

←Older revision		Revision as of 12:06, 22 October 2019
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	== Structural highlights ==		== Structural highlights ==
-	The <scene name='55/551220/Cv/3'>active site of α-xylosidase contains the xyloglucan and nucleophilic water</scene><ref>PMID:21426303</ref>. <scene name='55/551220/Cv/4'>Ni/Cl complex</scene>.	+	The <scene name='55/551220/Cv/5'>active site of α-xylosidase contains the xyloglucan and nucleophilic water</scene><ref>PMID:21426303</ref>. Water molecules are shown as red spheres. <scene name='55/551220/Cv/6'>Ni/Cl complex</scene>.
	</StructureSection>		</StructureSection>

Joel L. Sussman at 17:52, 14 October 2018

Joel L. Sussman — Sun, 14 Oct 2018 17:52:03 GMT

←Older revision		Revision as of 17:52, 14 October 2018
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-	<StructureSection load='~~2xvl~~' size='350' side='right' caption='Structure of α-xylosidase family 31 complex with pentaerythritol propoxylate, sulfate, Ni+2 (small green) and Cl- (large green) ions (PDB entry [[2xvl]])' scene='55/551220/Cv/1'>	+	<StructureSection load='' size='350' side='right' caption='Structure of α-xylosidase family 31 complex with pentaerythritol propoxylate, sulfate, Ni+2 (small green) and Cl- (large green) ions (PDB entry [[2xvl]])' scene='55/551220/Cv/1'>
	== Function ==		== Function ==
	'''Xylosidase''' (XYL) catalyzes the hydrolysis of α- or β-glycosidic linkages. '''β-XYL''' catalyzes the endo-hydrolysis of 1,4-β-D-glycosidic or endo-hydrolysis of 1,3-β-D-glycosidic linkage<ref>PMID:15283123</ref>. '''α-XYL''' catalyzes the exo-hydrolysis of 1,4-β-D-glycosidic or exo-hydrolysis of 1,3-β-D-glycosidic linkage from the non-reducing termini of xylans<ref>PMID:10801892</ref>. XYL catalyzes the conversion of cellulose and hemicellulose xylan to xylose.		'''Xylosidase''' (XYL) catalyzes the hydrolysis of α- or β-glycosidic linkages. '''β-XYL''' catalyzes the endo-hydrolysis of 1,4-β-D-glycosidic or endo-hydrolysis of 1,3-β-D-glycosidic linkage<ref>PMID:15283123</ref>. '''α-XYL''' catalyzes the exo-hydrolysis of 1,4-β-D-glycosidic or exo-hydrolysis of 1,3-β-D-glycosidic linkage from the non-reducing termini of xylans<ref>PMID:10801892</ref>. XYL catalyzes the conversion of cellulose and hemicellulose xylan to xylose.

Michal Harel at 18:11, 9 October 2018

Michal Harel — Tue, 09 Oct 2018 18:11:49 GMT

←Older revision		Revision as of 18:11, 9 October 2018
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	**[[1xsi]], [[1xsj]], [[1we5]] – EcXYL – ''Escherichia coli''<br />		**[[1xsi]], [[1xsj]], [[1we5]] – EcXYL – ''Escherichia coli''<br />
	**[[1xsk]] – EcXYL + intermediate<br />		**[[1xsk]] – EcXYL + intermediate<br />
		+	**[[6dru]] – XYL + xylopyranose - ''Aspergillus niger'' <BR />
		+	**[[5hxm]] – XYL + panose - ''Listeria monocytogenes'' <BR />

	*β-xylosidase		*β-xylosidase
Line 28:		Line 30:
	**[[1yrz]] – XYL – ''Bacillus halodurans'' <BR />		**[[1yrz]] – XYL – ''Bacillus halodurans'' <BR />
	**[[1yif]] – XYL – ''Bacillus subtilis'' <BR />		**[[1yif]] – XYL – ''Bacillus subtilis'' <BR />
		+	**[[5zqj]] – BpXYL – ''Bacillus pumilus'' <BR />
		+	**[[5zqx]] – BpXYL (mutant) + xylobiose <BR />
		+	**[[5zqs]] – BpXYL (mutant) + xylobiose + xylopyranose <BR />
	**[[4mlg]] – XYL – uncultured <BR />		**[[4mlg]] – XYL – uncultured <BR />
	**[[3c2u]] – XYL + propane derivative – ''Selenomonas ruminantium'' <BR />		**[[3c2u]] – XYL + propane derivative – ''Selenomonas ruminantium'' <BR />
Line 48:		Line 53:
	**[[1y7b]], [[1yi7]], [[3k1u]] – CaXYL – ''Clostridium acetobutylicum'' <BR />		**[[1y7b]], [[1yi7]], [[3k1u]] – CaXYL – ''Clostridium acetobutylicum'' <BR />
	**[[3qed]], [[3qee]] – CjXYL <BR />		**[[3qed]], [[3qee]] – CjXYL <BR />
		+	**[[5z5d]] – GtXYL - ''Geobacillus thermoleovorans'' <BR />
		+	**[[5z5f]] – GtXYL + arabinose <BR />
		+	**[[5z5h]] – GtXYL + xylose <BR />
		+	**[[5z5i]] – GtXYL + arabinose + xylopyranose <BR />
	**[[2exh]] – BsXYL <BR />		**[[2exh]] – BsXYL <BR />
	**[[2exi]] – BsXYL (mutant) <BR />		**[[2exi]] – BsXYL (mutant) <BR />

Alexander Berchansky at 13:34, 15 December 2016

Alexander Berchansky — Thu, 15 Dec 2016 13:34:20 GMT

←Older revision		Revision as of 13:34, 15 December 2016
Line 4:		Line 4:

	== Structural highlights ==		== Structural highlights ==
-	The <scene name='55/551220/Cv/3'>active site of α-xylosidase contains the xyloglucan and nucleophilic water</scene><ref>PMID:21426303</ref>.	+	The <scene name='55/551220/Cv/3'>active site of α-xylosidase contains the xyloglucan and nucleophilic water</scene><ref>PMID:21426303</ref>. <scene name='55/551220/Cv/4'>Ni/Cl complex</scene>.
	</StructureSection>		</StructureSection>

Alexander Berchansky at 13:23, 15 December 2016

Alexander Berchansky — Thu, 15 Dec 2016 13:23:11 GMT

←Older revision		Revision as of 13:23, 15 December 2016
Line 4:		Line 4:

	== Structural highlights ==		== Structural highlights ==
-	The active site of α-xylosidase contains the xyloglucan and nucleophilic water<ref>PMID:21426303</ref>.	+	The <scene name='55/551220/Cv/3'>active site of α-xylosidase contains the xyloglucan and nucleophilic water</scene><ref>PMID:21426303</ref>.
	</StructureSection>		</StructureSection>

Alexander Berchansky at 12:44, 15 December 2016

Alexander Berchansky — Thu, 15 Dec 2016 12:44:38 GMT

←Older revision		Revision as of 12:44, 15 December 2016
Line 1:		Line 1:
-	<StructureSection load='2xvl' size='350' side='right' caption='Structure of α-xylosidase family 31 complex with pentaerythritol propoxylate, sulfate, Ni+2 (small green) and Cl- (large green) ions (PDB entry [[2xvl]])' scene=''>	+	<StructureSection load='2xvl' size='350' side='right' caption='Structure of α-xylosidase family 31 complex with pentaerythritol propoxylate, sulfate, Ni+2 (small green) and Cl- (large green) ions (PDB entry [[2xvl]])' scene='55/551220/Cv/1'>
	== Function ==		== Function ==
	'''Xylosidase''' (XYL) catalyzes the hydrolysis of α- or β-glycosidic linkages. '''β-XYL''' catalyzes the endo-hydrolysis of 1,4-β-D-glycosidic or endo-hydrolysis of 1,3-β-D-glycosidic linkage<ref>PMID:15283123</ref>. '''α-XYL''' catalyzes the exo-hydrolysis of 1,4-β-D-glycosidic or exo-hydrolysis of 1,3-β-D-glycosidic linkage from the non-reducing termini of xylans<ref>PMID:10801892</ref>. XYL catalyzes the conversion of cellulose and hemicellulose xylan to xylose.		'''Xylosidase''' (XYL) catalyzes the hydrolysis of α- or β-glycosidic linkages. '''β-XYL''' catalyzes the endo-hydrolysis of 1,4-β-D-glycosidic or endo-hydrolysis of 1,3-β-D-glycosidic linkage<ref>PMID:15283123</ref>. '''α-XYL''' catalyzes the exo-hydrolysis of 1,4-β-D-glycosidic or exo-hydrolysis of 1,3-β-D-glycosidic linkage from the non-reducing termini of xylans<ref>PMID:10801892</ref>. XYL catalyzes the conversion of cellulose and hemicellulose xylan to xylose.

Michal Harel at 07:52, 15 December 2016

Michal Harel — Thu, 15 Dec 2016 07:52:34 GMT

←Older revision		Revision as of 07:52, 15 December 2016
Line 11:		Line 11:
	Updated on {{REVISIONDAY2}}-{{MONTHNAME\|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}		Updated on {{REVISIONDAY2}}-{{MONTHNAME\|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
	{{#tree:id=OrganizedByTopic\|openlevels=0\|		{{#tree:id=OrganizedByTopic\|openlevels=0\|
		+
		+	*α-xylosidase
		+
		+	**[[5jou]] – BoXYL – ''Bacterioides ovatus'' <BR />
		+	**[[5jov]] – BoXYL + piperazine derivative <BR />

	*α-xylosidase family 31		*α-xylosidase family 31
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	**[[4mlg]] – XYL – uncultured <BR />		**[[4mlg]] – XYL – uncultured <BR />
	**[[3c2u]] – XYL + propane derivative – ''Selenomonas ruminantium'' <BR />		**[[3c2u]] – XYL + propane derivative – ''Selenomonas ruminantium'' <BR />
		+
		+	*β-xylosidase family 3
		+
		+	**[[5a7m]] – HjXYL – ''Hypocrea jecorina'' <BR />
		+	**[[5ae6]] – HjXYL + thioxylobiose <BR />

	*β-xylosidase family 39		*β-xylosidase family 39
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	**[[4ekj]] – XYL – ''Caulobacter vibrioides''<BR />		**[[4ekj]] – XYL – ''Caulobacter vibrioides''<BR />
	**[[4m29]] – XYL – ''Caulobacter crscentus''<BR />		**[[4m29]] – XYL – ''Caulobacter crscentus''<BR />
-	**[[2bs9]], [[1w91]] – BsXYL – ''Bacillus stearothermophilus'' <BR />	+	**[[2bs9]], [[1w91]], [[4rhh]] – BsXYL – ''Bacillus stearothermophilus'' <BR />
	**[[2bfg]] – BsXYL + xylobiose <BR />		**[[2bfg]] – BsXYL + xylobiose <BR />

Michal Harel at 11:12, 14 December 2016

Michal Harel — Wed, 14 Dec 2016 11:12:24 GMT

←Older revision		Revision as of 11:12, 14 December 2016
Line 1:		Line 1:
-	<StructureSection load='2xvl' size='350' side='right' caption='Structure of α-xylosidase family 31 complex with ~~xylobiose~~, sulfate, Ni+2 (small green) and Cl- (large green) ions (PDB entry [[2xvl]])' scene=''>	+	<StructureSection load='2xvl' size='350' side='right' caption='Structure of α-xylosidase family 31 complex with pentaerythritol propoxylate, sulfate, Ni+2 (small green) and Cl- (large green) ions (PDB entry [[2xvl]])' scene=''>
-		+	== Function ==
	'''Xylosidase''' (XYL) catalyzes the hydrolysis of α- or β-glycosidic linkages. '''β-XYL''' catalyzes the endo-hydrolysis of 1,4-β-D-glycosidic or endo-hydrolysis of 1,3-β-D-glycosidic linkage<ref>PMID:15283123</ref>. '''α-XYL''' catalyzes the exo-hydrolysis of 1,4-β-D-glycosidic or exo-hydrolysis of 1,3-β-D-glycosidic linkage from the non-reducing termini of xylans<ref>PMID:10801892</ref>. XYL catalyzes the conversion of cellulose and hemicellulose xylan to xylose.		'''Xylosidase''' (XYL) catalyzes the hydrolysis of α- or β-glycosidic linkages. '''β-XYL''' catalyzes the endo-hydrolysis of 1,4-β-D-glycosidic or endo-hydrolysis of 1,3-β-D-glycosidic linkage<ref>PMID:15283123</ref>. '''α-XYL''' catalyzes the exo-hydrolysis of 1,4-β-D-glycosidic or exo-hydrolysis of 1,3-β-D-glycosidic linkage from the non-reducing termini of xylans<ref>PMID:10801892</ref>. XYL catalyzes the conversion of cellulose and hemicellulose xylan to xylose.
		+
		+	== Structural highlights ==
		+	The active site of α-xylosidase contains the xyloglucan and nucleophilic water<ref>PMID:21426303</ref>.
	</StructureSection>		</StructureSection>