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5wlg

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(New page: '''Unreleased structure''' The entry 5wlg is ON HOLD until Jul 26 2019 Authors: Gras, S., Farenc, C., Josephs, T., Rossjohn, J. Description: Crystal Structure of H-2Db with the GAP501 ...)
Current revision (14:16, 4 October 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 5wlg is ON HOLD until Jul 26 2019
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==Crystal Structure of H-2Db with the GAP501 peptide (SQL)==
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<StructureSection load='5wlg' size='340' side='right'caption='[[5wlg]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[5wlg]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens], [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [https://en.wikipedia.org/wiki/Plasmodium_berghei Plasmodium berghei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WLG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WLG FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5wlg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5wlg OCA], [https://pdbe.org/5wlg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5wlg RCSB], [https://www.ebi.ac.uk/pdbsum/5wlg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5wlg ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A0Y9W4B5_PLABE A0A0Y9W4B5_PLABE]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Immune response (Ir) genes, originally proposed by Baruj Benacerraf to explain differential antigen-specific responses in animal models, have become synonymous with the major histocompatibility complex (MHC). We discovered a non-MHC-linked Ir gene in a T cell receptor (TCR) locus that was required for CD8(+) T cell responses to the Plasmodium berghei GAP5040-48 epitope in mice expressing the MHC class I allele H-2D(b). GAP5040-48-specific CD8(+) T cell responses emerged from a very large pool of naive Vbeta8.1(+) precursors, which dictated susceptibility to cerebral malaria and conferred protection against recombinant Listeria monocytogenes infection. Structural analysis of a prototypical Vbeta8.1(+) TCR-H-2D(b)-GAP5040-48 ternary complex revealed that germline-encoded complementarity-determining region 1beta residues present exclusively in the Vbeta8.1 segment mediated essential interactions with the GAP5040-48 peptide. Collectively, these findings demonstrated that Vbeta8.1 functioned as an Ir gene that was indispensable for immune reactivity against the malaria GAP5040-48 epitope.
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Authors: Gras, S., Farenc, C., Josephs, T., Rossjohn, J.
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A T Cell Receptor Locus Harbors a Malaria-Specific Immune Response Gene.,Van Braeckel-Budimir N, Gras S, Ladell K, Josephs TM, Pewe L, Urban SL, Miners KL, Farenc C, Price DA, Rossjohn J, Harty JT Immunity. 2017 Nov 21;47(5):835-847.e4. doi: 10.1016/j.immuni.2017.10.013. Epub, 2017 Nov 14. PMID:29150238<ref>PMID:29150238</ref>
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Description: Crystal Structure of H-2Db with the GAP501 peptide (SQL)
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Rossjohn, J]]
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<div class="pdbe-citations 5wlg" style="background-color:#fffaf0;"></div>
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[[Category: Gras, S]]
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[[Category: Josephs, T]]
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==See Also==
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[[Category: Farenc, C]]
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*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
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*[[T-cell receptor 3D structures|T-cell receptor 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Mus musculus]]
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[[Category: Plasmodium berghei]]
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[[Category: Farenc C]]
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[[Category: Gras S]]
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[[Category: Josephs T]]
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[[Category: Rossjohn J]]

Current revision

Crystal Structure of H-2Db with the GAP501 peptide (SQL)

PDB ID 5wlg

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