2zg8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:35, 1 November 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2zg8.png|left|200px]]
 
-
{{STRUCTURE_2zg8| PDB=2zg8 | SCENE= }}
+
==Crystal Structure of Pd(allyl)/apo-H49AFr==
 +
<StructureSection load='2zg8' size='340' side='right'caption='[[2zg8]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2zg8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZG8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZG8 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PD:PALLADIUM+ION'>PD</scene>, <scene name='pdbligand=PLL:PALLADIUM(II)+ALLYL+COMPLEX'>PLL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zg8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zg8 OCA], [https://pdbe.org/2zg8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zg8 RCSB], [https://www.ebi.ac.uk/pdbsum/2zg8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zg8 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FRIL_HORSE FRIL_HORSE] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zg/2zg8_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zg8 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
We report the preparation of organometallic Pd(allyl) dinuclear complexes in protein cages of apo-Fr by reactions with [Pd(allyl)Cl]2 (allyl = eta3-C3H5). One of the dinuclear complexes is converted to a trinuclear complex by replacing a Pd-coordinated His residue to an Ala residue. These results suggest that multinuclear metal complexes with various coordination structures could be prepared by the deletion or introduction of His, Cys, and Glu at appropriate positions on protein surface.
-
===Crystal Structure of Pd(allyl)/apo-H49AFr===
+
Control of the coordination structure of organometallic palladium complexes in an apo-ferritin cage.,Abe S, Niemeyer J, Abe M, Takezawa Y, Ueno T, Hikage T, Erker G, Watanabe Y J Am Chem Soc. 2008 Aug 13;130(32):10512-4. Epub 2008 Jul 18. PMID:18636721<ref>PMID:18636721</ref>
-
{{ABSTRACT_PUBMED_18636721}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 2zg8" style="background-color:#fffaf0;"></div>
-
[[2zg8]] is a 1 chain structure of [[Ferritin]] with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZG8 OCA].
+
==See Also==
==See Also==
-
*[[Ferritin|Ferritin]]
+
*[[Ferritin 3D structures|Ferritin 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:018636721</ref><references group="xtra"/>
+
__TOC__
 +
</StructureSection>
[[Category: Equus caballus]]
[[Category: Equus caballus]]
-
[[Category: Abe, M.]]
+
[[Category: Large Structures]]
-
[[Category: Abe, S.]]
+
[[Category: Abe M]]
-
[[Category: Erker, G.]]
+
[[Category: Abe S]]
-
[[Category: Hikage, T.]]
+
[[Category: Erker G]]
-
[[Category: Niemeyer, J.]]
+
[[Category: Hikage T]]
-
[[Category: Ueno, T.]]
+
[[Category: Niemeyer J]]
-
[[Category: Watanabe, Y.]]
+
[[Category: Ueno T]]
-
[[Category: Artificial metalloprotein]]
+
[[Category: Watanabe Y]]
-
[[Category: Iron storage protein]]
+
-
[[Category: Light chain apoferritin]]
+
-
[[Category: Metal binding protein]]
+

Current revision

Crystal Structure of Pd(allyl)/apo-H49AFr

PDB ID 2zg8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools