Ribosomal protein L9

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[[Image:1div.png|left|200px|thumb|Crystal Structure of Ribosomal protein L9 ([[1div]])]]
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<StructureSection load='' size='350' side='right' caption='Ribosomal protein L9, (PDB code [[1div]])' scene='Ribosomal_protein_L9/Cv/1'>
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{{STRUCTURE_1div| PDB=1div | SIZE=300| SCENE=Ribosomal_protein_L9/Cv/1 |right|CAPTION=Ribosomal protein L9 [[1div]] }}
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[[Ribosomal protein L9]] (RPL9) is one of the 34 proteins which belong to the large 50S subunit of the prokaryotic ribosome or to the ca. 49 proteins in the large 60S subunit of the eukaryotic ribosome. The images at the left and at the right correspond to one representative RPL9, ''i.e.'' the crystal structure of Ribosomal protein L9 from ''Bacillus stearothermophilus'' ([[1div]]).
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[[Ribosomal protein L9]] (RPL9) is one of the 34 proteins which belong to the large 50S subunit of the prokaryotic ribosome or to the ca. 49 proteins in the large 60S subunit of the eukaryotic ribosome<ref>PMID:8780779</ref>.
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{{TOC limit|limit=2}}
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</StructureSection>
== 3D Structures of Ribosomal protein L9 ==
== 3D Structures of Ribosomal protein L9 ==
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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
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{{#tree:id=OrganizedByTopic|openlevels=0|
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=== RPL9 ===
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*Ribosomal protein L9
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[[1div]] – GsRPL9 – ''Geobacillus stearothermophilus''<br />
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[[2hvf]], [[2hba]] – GsRPL9 N-terminal (mutant)<br />
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[[2hbb]] - GsRPL9 N-terminal<br />
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[[1cqu]] - GsRPL9 N-terminal - NMR<br />
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[[2cql]] - hRPL9 N-terminal - human <br />
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=== L9 in 50S subunit+RNA ===
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[[2xg0]], [[2xg2]], [[3kir]], [[3kit]], [[3kiw]], [[3kiy]] – TtRPL10 in 50S subunit+RNA fragments - ''Thermus thermophilus''<br />
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[[2x9s]], [[2x9u]], [[3kni]], [[3knk]], [[3knm]], [[3kno]], [[3hux]], [[3huz]], [[2wh2]], [[2wh4]], [[2wdi]], [[2wdj]], [[2wdl]], [[2wdn]], [[1vsp]], [[2v47]], [[2v49]], [[1vsa]], [[2hgj]], [[2hgq]], [[2hgu]], [[2j01]], [[2j03]], [[1yl3]], [[3mrz]], [[3ms1]], [[3i8f]], [[3i8i]], [[3i9c]], [[3i9e]], [[3f1f]], [[3f1h]], [[3d5b]], [[3d5d]], [[2b66]], [[2b9n]], [[2b9p]], [[1giy]], [[3pyo]], [[3pyr]], [[3pyt]], [[3pyv]], [[3tve]], [[3tvh]], [[3uye]], [[3uyg]], [[3uz1]], [[3uz2]], [[3uz8]], [[3uz9]], [[3uzf]], [[3uzh]], [[3uzk]], [[3uzn]], [[4dha]], [[4dhc]], [[3v23]], [[3v25]], [[3v27]], [[3v29]], [[3v2d]], [[3v2f]], [[3v6w]], [[3v6x]], [[3zn9]], [[3zne]], [[4ejb]], [[4ejc]], [[4g5l]], [[4g5n]], [[4g5u]], [[4g5w]], [[4k0m]], [[4k0q]], [[4kfi]], [[4kfl]] - TtRPL10 in 50S subunit+5S RRNA+23S RRNA<br />
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[[3fin]] - TtRPL9 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<br />
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[[2wwq]] – EcRPL9 in 50S subunit+5S RRNA+23S RRNA+mRNA+P-site tRNA – ''Escherichia coli''<br />
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[[3i1n]], [[3i1p]], [[3i1r]], [[3i1t]], [[3i20]], [[3i22]], [[3e1b]], [[3e1d]], [[3df2]], [[3df4]], [[2vhn]], [[2qov]], [[2qox]], [[2i2t]], [[2i2v]], [[1vs6]], [[1vs8]], [[2aw4]], [[2awb]], [[3ofd]], [[3og0]], [[1vor]], [[1vou]], [[1vow]], [[1voy]], [[1vp0]], [[1pnu]], [[1pny]], [[3r8s]], [[3r8t]], [[3uxq]], [[3uxr]], [[4gar]], [[4gau]], [[3j37]], [[4kix]], [[4kiz]], [[4kj1]], [[4kj3]], [[4kj5]], [[4kj7]], [[4kj9]], [[4kjb]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA<br />
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[[3fik]], [[2gya]], [[2gyc]], [[3bbx]], [[1p85]], [[1p86]], [[3izt]], [[3izu]], [[3j0t]], [[3j0w]], [[3j0y]], [[3j11]], [[3j12]], [[3j14]], [[3j19]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA – Cryo-EM<br />
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[[3kcr]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase<br />
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[[3j01]] – EcRPL9 in 50S subunit+5S RRNA+23S RRNA+preprotein translocase – Cryo-EM<br />
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[[2rdo]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+EF-G+RRF – Cryo-EM<br />
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[[3bbo]] - RPL9 in 50S subunit+5S RRNA+23S RRNA+4.8S RRNA – Cryo-EM – spinach<br />
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[[3iy9]] – RPL9 in 50S subunit – ''Leishmania taretolae''<br />
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[[1nkw]] - DrRPL9 in 50S subunit+5S RRNA+23S RRNA - ''Deinococcus radiodurans''
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=== L9 in 50S subunit + antibiotics ===
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[[1xbp]], [[1nwx]], [[1nwy]], [[1sm1]] - DrRPL9 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br />
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[[3oh5]], [[3oh7]], [[3ohj]], [[3ohk]], [[3ohz]], [[3oi1]], [[3oi3]], [[3oi5]] – TtRPL9 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br />
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[[2qam]], [[2qao]], [[2qoz]], [[2qp1]], [[2qba]], [[2qbc]], [[3ofc]], [[3ofz]], [[3ofq]], [[3ofr]], [[1vt2]], [[3orb]], [[3oas]], [[3oat]], [[4l6j]], [[4l6l]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+antibiotic<br />
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=== L9 in 60S subunit ===
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[[3jyw]] - RPL9 in 60S subunit – ''Thermomyces lanuginosus'' – Cryo-EM<br />
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[[3j39]] – RPL9 in 60S subunit – ''Drosophila melanogaster'' – Cryo-EM<br />
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[[3j3b]] – RPL9 in 60S subunit – human – Cryo-EM<br />
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[[1s1i]] - yRPL9 in 40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast<br />
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[[3o58]], [[3o5h]] - yRPL9 in 60S ribosomal subunit+25S RRNA+5S RRNA+5.8S RRNA<br />
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[[3izs]] – yRPL9 in 60S ribosomal subunit – Cryo-EM<br />
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[[3u5e]], [[3u5i]] – yRPL9 in 60S ribosomal subunit<br />
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[[3izr]] – RPL9 in 60S subunit – wheat – Cryo EM<br />
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[[4b6a]] – yRPL9 in 60S ribosomal subunit + P0 + P1 + P2 + ARX1 – Cryo-EM<br />
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=== L9 in large + small ribosomal subunit ===
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[[2zkr]] - RPL9 in 60S ribosomal subunit+30S ribosomal subunit+28S RRNA+5.8S RRNA – Cryo-EM – dog
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===L9 in 50S subunit + ribosome releasing factor (RRF)===
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[[2qbe]], [[2qbg]], [[2qbi]], [[2qbk]], [[2z4l]], [[2z4n]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+RRF
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===L9 in 50S subunit + various proteins===
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[[2vhm]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+PDF C-terminal helix<br />
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**[[1div]] – GsRPL9 – ''Geobacillus stearothermophilus''<br />
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[[2j28]] - EcRPL9 in 50S subunit+5S RRNA+23S RRNA+signal recognition particle – Cryo-EM<br />
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**[[2hvf]], [[2hba]] – GsRPL9 N-terminal (mutant)<br />
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**[[2hbb]] - GsRPL9 N-terminal<br />
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**[[1cqu]] - GsRPL9 N-terminal - NMR<br />
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**[[2cql]] - hRPL9 N-terminal - human <br />
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===L9 in part of 50S subunit===
 
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[[487d]] – RPL9+RPL1+RPL2+RPL6+RPL11+RPL14+RPL25 – Cryo-EM
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*Ribosomal protein L9 in part of 50S subunit
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**[[487d]] – RPL9+RPL1+RPL2+RPL6+RPL11+RPL14+RPL25 – Cryo-EM
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}}
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== References ==
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<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

Ribosomal protein L9, (PDB code 1div)

Drag the structure with the mouse to rotate

3D Structures of Ribosomal protein L9

Updated on 29-September-2017


References

  1. ↑ Adamski FM, Atkins JF, Gesteland RF. Ribosomal protein L9 interactions with 23 S rRNA: the use of a translational bypass assay to study the effect of amino acid substitutions. J Mol Biol. 1996 Aug 23;261(3):357-71. PMID:8780779 doi:http://dx.doi.org/10.1006/jmbi.1996.0469

Proteopedia Page Contributors and Editors (what is this?)

Alexander Berchansky, Michal Harel, Joel L. Sussman

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